Clc02G07870 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G07870
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Transpos_assoc domain-containing protein
Location	ClcChr02: 8576836 .. 8578550 (-)
RNA-Seq Expression	Clc02G07870
Synteny	Clc02G07870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCTTATGCCGACGCAAAGCTACGTCGGCAAAGATCAATATAGAACAAAAGAATACCTTTTTTCCCCAGATCTATGGCGACGCAAATATGCATCGAAAAAAGTTGACCTAAAAAAGGTTTATTTCATTGATTTATGCCAACGAAAATTGGGGTATACGGCAACGTGAGGATGCATCAGGCAAAGTTTAACTAAAAAAACCCTTCCCCCCCCCCCTCCTTTTTTCCCTCTTCCCCATCTATTTTCGCGAACGTCGACCCCCTCCCCTCGATTTTGCTTTAGTCAGATTTTACTTCCCCCCTTTATTTGGCCGATTTGTTCTTCACCCAACAGCTAGCCATCGCCATTGACTTCTCCTCAACAGCCATCGTCGCATAGATGTCTCCTCGCCAACCTATTCTCCGCGCGGCGTCTCCTCCGGCATTCTTTGACCTGTTCTTTGCACGTCGCTGGCTTCTCCACCGACTTCTCCCCAACAACCATCGTCGTCGGCTTCTCAATGTGTTCTCCTCATGCCACCGACTTCTCCCCAACGGCCATCGTTGCTGGCTTCTTCGACCTGTTTTCCACACGCTGTCGACTTCTCCCTAACAGCCCTCGTCACTGGCTTCTCCAACTCAGTCTCCATGCATACGTCTCCTCCGACTCATTCTTTGTGCGACGTCTCCCCAACAGCCATCGTTGTCGGCTTGTTCTAGGTACCTTTTATCGTATTATTTTGTAATCAATCAATTGGTGTGTGATTCGTCAGTGGCCCAGATTGAACCGAATATGTGTGTGTCTGTGGTTTTGTCACATGTATGTGAGTGTGGGCTACATATTTTAGTTGATATTTGATGTTTTTCCATCATAGTACTTGTATATGTATAGATTGTTCGTTGGCTTTTTTCCCCTAATCAATCATTTTATGCACCATGCATGGGAGTGTATGGGAGTGTGGACGACATATTTTGTCTCATTCGCCAATGGCTCATAGCATTCTTGAATATACTGTTGAATATATATGTAGCATCACTTTCATTGTTGAATATATGTGTAGCATCACTATTATTGTTAAATTGATAACCTTCAGTTTGGGTTTGAGAGTCAAATTGGCACATAAACGCTTTTTAGGAACTTTTTACTTGGAGTCAAATACTCAAATTGACACTTTAACACATTTTAGGAACTTTATGGGTGTTATGAGAGTCAAAGTTCTCACTTAGATACTTTTTAGGAGTTTTTTAGTTTGAAATTGGAGAGTGAAAGTGACCCTTGTTAAAGTATACTTAGGTTTAAACTTCTTGTCCTTACTCCTAAGATTAAAATTTGTCCATTCTATTCAAATATGAATAAGAATTGGATTAAACTTAGAGATACATTCTCAAGAGAGTATATTGATGGCGATGCACAATTTATGGAAGTGGCAAAATGCCATGTAAATAGAGAAGGAAAAACGAGATGTCCATGTAAAAATTGTCAGAATTCAATGTTTCAGACGGAGTAGAATGACATTTATTTGCTAATGAAATATCTCCTTCATATAGTCAATGGATTTATCATGGAGAACCAGCAAATCTATCTCGATTTCAAACAGTCATGACTCCTTTAGCTCCTTTAGCAGATGATGGATTAAGGGAAGAACCTACTACTCAAAATGATGACAATGAGTTGTTAGATCTTTTAAATGATTTGCAAGGACCGATGAGAGAAATGGAATATATTTGGAGATGA

mRNA sequence

ATGGGTCTTATGCCGACGCAAAGCTACGTCGGCAAAGATCAATATAGAACAAAAGAATACCTTTTTTCCCCAGATCTATGGCGACGCAAATATGCATCGAAAAAAGTTGACCTAAAAAAGCCATCGCCATTGACTTCTCCTCAACAGCCATCGTCGCATAGATGTCTCCTCGCCAACCTATTCTCCGCGCGGCGTCTCCTCCGGCATTCTTTGACCTGTTCTTTGCACGTCGCTGGCTTCTCCACCGACTTCTCCCCAACAACCATCGTCGTCGGCTTCTCAATGTGTTCTCCTCATGCCACCGACTTCTCCCCAACGGCCATCGTTGCTGGCTTCTTCGACCTGTTTTCCACACGCTGTCGACTTCTCCCTAACAGCCCTCGTCACTGGCTTCTCCAACTCAGTCTCCATGCATACGTCTCCTCCGACTCATTCTTTGTGCGACGTCTCCCCAACAGCCATCGTTGTCGGCTTGTTCTAGTCATGACTCCTTTAGCTCCTTTAGCAGATGATGGATTAAGGGAAGAACCTACTACTCAAAATGATGACAATGAGTTGTTAGATCTTTTAAATGATTTGCAAGGACCGATGAGAGAAATGGAATATATTTGGAGATGA

Coding sequence (CDS)

ATGGGTCTTATGCCGACGCAAAGCTACGTCGGCAAAGATCAATATAGAACAAAAGAATACCTTTTTTCCCCAGATCTATGGCGACGCAAATATGCATCGAAAAAAGTTGACCTAAAAAAGCCATCGCCATTGACTTCTCCTCAACAGCCATCGTCGCATAGATGTCTCCTCGCCAACCTATTCTCCGCGCGGCGTCTCCTCCGGCATTCTTTGACCTGTTCTTTGCACGTCGCTGGCTTCTCCACCGACTTCTCCCCAACAACCATCGTCGTCGGCTTCTCAATGTGTTCTCCTCATGCCACCGACTTCTCCCCAACGGCCATCGTTGCTGGCTTCTTCGACCTGTTTTCCACACGCTGTCGACTTCTCCCTAACAGCCCTCGTCACTGGCTTCTCCAACTCAGTCTCCATGCATACGTCTCCTCCGACTCATTCTTTGTGCGACGTCTCCCCAACAGCCATCGTTGTCGGCTTGTTCTAGTCATGACTCCTTTAGCTCCTTTAGCAGATGATGGATTAAGGGAAGAACCTACTACTCAAAATGATGACAATGAGTTGTTAGATCTTTTAAATGATTTGCAAGGACCGATGAGAGAAATGGAATATATTTGGAGATGA

Protein sequence

MGLMPTQSYVGKDQYRTKEYLFSPDLWRRKYASKKVDLKKPSPLTSPQQPSSHRCLLANLFSARRLLRHSLTCSLHVAGFSTDFSPTTIVVGFSMCSPHATDFSPTAIVAGFFDLFSTRCRLLPNSPRHWLLQLSLHAYVSSDSFFVRRLPNSHRCRLVLVMTPLAPLADDGLREEPTTQNDDNELLDLLNDLQGPMREMEYIWR

Homology

[Close]

BLAST of Clc02G07870 vs. NCBI nr
Match: KAA0040452.1 (uncharacterized protein E6C27_scaffold35G00950 [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 2.9e-04
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 168 LADDGLREEPTTQNDDNELLDLLNDLQGPMREMEY 203
           L DD LRE+PTT+NDDNEL  LLNDLQGPM+E  Y
Sbjct: 60  LVDDILREQPTTENDDNELFKLLNDLQGPMKEGAY 94

[Close]

BLAST of Clc02G07870 vs. NCBI nr
Match: TYK28900.1 (uncharacterized protein E5676_scaffold2406G00230 [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 2.9e-04
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 168 LADDGLREEPTTQNDDNELLDLLNDLQGPMREMEY 203
           L DD LRE+PTT+NDDNEL  LLNDLQGPM+E  Y
Sbjct: 60  LVDDILREQPTTENDDNELFKLLNDLQGPMKEGAY 94

[Close]

BLAST of Clc02G07870 vs. NCBI nr
Match: TYK14987.1 (uncharacterized protein E5676_scaffold45G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 4.9e-04
Identity = 29/46 (63.04%), Postives = 33/46 (71.74%), Query Frame = 0


Query: 162 MTPLAPLADDG-----LREEPTTQNDDNELLDLLNDLQGPMREMEY 203
           MT L  L DDG     LRE+PT +NDD+EL +LLNDLQGPMRE  Y
Sbjct: 1   MTLLPSLVDDGLVGDRLREQPTIENDDSELFNLLNDLQGPMREEAY 46

[Close]

BLAST of Clc02G07870 vs. ExPASy TrEMBL
Match: A0A5A7TAI0 (Transpos_assoc domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold35G00950 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.4e-04
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 168 LADDGLREEPTTQNDDNELLDLLNDLQGPMREMEY 203
           L DD LRE+PTT+NDDNEL  LLNDLQGPM+E  Y
Sbjct: 60  LVDDILREQPTTENDDNELFKLLNDLQGPMKEGAY 94

[Close]

BLAST of Clc02G07870 vs. ExPASy TrEMBL
Match: A0A5D3E061 (Transpos_assoc domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2406G00230 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.4e-04
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 168 LADDGLREEPTTQNDDNELLDLLNDLQGPMREMEY 203
           L DD LRE+PTT+NDDNEL  LLNDLQGPM+E  Y
Sbjct: 60  LVDDILREQPTTENDDNELFKLLNDLQGPMKEGAY 94

[Close]

BLAST of Clc02G07870 vs. ExPASy TrEMBL
Match: A0A5D3CSS7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G00180 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.4e-04
Identity = 29/46 (63.04%), Postives = 33/46 (71.74%), Query Frame = 0


Query: 162 MTPLAPLADDG-----LREEPTTQNDDNELLDLLNDLQGPMREMEY 203
           MT L  L DDG     LRE+PT +NDD+EL +LLNDLQGPMRE  Y
Sbjct: 1   MTLLPSLVDDGLVGDRLREQPTIENDDSELFNLLNDLQGPMREEAY 46

The following BLAST results are available for this feature:

BLAST of Clc02G07870 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040452.1	2.9e-04	74.29	uncharacterized protein E6C27_scaffold35G00950 [Cucumis melo var. makuwa]	[more]
TYK28900.1	2.9e-04	74.29	uncharacterized protein E5676_scaffold2406G00230 [Cucumis melo var. makuwa]	[more]
TYK14987.1	4.9e-04	63.04	uncharacterized protein E5676_scaffold45G00180 [Cucumis melo var. makuwa]	[more]

BLAST of Clc02G07870 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc02G07870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TAI0	1.4e-04	74.29	Transpos_assoc domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3E061	1.4e-04	74.29	Transpos_assoc domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3CSS7	2.4e-04	63.04	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Clc02G07870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G07870.1	Clc02G07870.1	mRNA