Clc02G07610 (gene) Watermelon (cordophanus) v2

Overview
NameClc02G07610
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Descriptionbasic form of pathogenesis-related protein 1-like
LocationClcChr02: 8025673 .. 8025929 (+)
RNA-Seq ExpressionClc02G07610
SyntenyClc02G07610
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAACCAGAACCCTATCCTACATTGCCCCCATCTTCGCCGAAAGCTACCCAACTACACTGCTGCCCACAATGCAATCCGCGCGAAAGTTAGTGTCCTGTCCCTCCATTAATAACCACTCTGGCTGCTTATGCTCAGAACTATGCCAACACGAAGATCACTACTTGTAAAATGGAGCACTCTAGAGGACCTTATGGCGAGAACCTAACGAAGGGGTACAAAATGATGACAGCAGAGACAACAATGAGTCTCTAA

mRNA sequence

ATGGCTAACCAGAACCCTATCCTACATTGCCCCCATCTTCGCCGAAAGCTACCCAACTACACTGCTGCCCACAATGCAATCCGCGCGAAAAACTATGCCAACACGAAGATCACTACTTGTAAAATGGAGCACTCTAGAGGACCTTATGGCGAGAACCTAACGAAGGGGTACAAAATGATGACAGCAGAGACAACAATGAGTCTCTAA

Coding sequence (CDS)

ATGGCTAACCAGAACCCTATCCTACATTGCCCCCATCTTCGCCGAAAGCTACCCAACTACACTGCTGCCCACAATGCAATCCGCGCGAAAAACTATGCCAACACGAAGATCACTACTTGTAAAATGGAGCACTCTAGAGGACCTTATGGCGAGAACCTAACGAAGGGGTACAAAATGATGACAGCAGAGACAACAATGAGTCTCTAA

Protein sequence

MANQNPILHCPHLRRKLPNYTAAHNAIRAKNYANTKITTCKMEHSRGPYGENLTKGYKMMTAETTMSL
Homology
BLAST of Clc02G07610 vs. NCBI nr
Match: XP_038888921.1 (basic form of pathogenesis-related protein 1-like [Benincasa hispida])

HSP 1 Score: 74.7 bits (182), Expect = 3.4e-10
Identity = 39/67 (58.21%), Postives = 45/67 (67.16%), Query Frame = 0

Query: 19 NYTAAHNAIR-----------------AKNYANTKITTCKMEHSRGPYGENLTKGYKMMT 69
          NY AAHNAIR                 A+NYANTKI TC+MEHS GPYGENL +GY++MT
Sbjct: 33 NYIAAHNAIRAEVGIEPLHWNATLAAYAQNYANTKIATCQMEHSGGPYGENLAEGYEVMT 92

BLAST of Clc02G07610 vs. NCBI nr
Match: XP_008455069.1 (PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis melo] >KAA0031391.1 basic form of pathogenesis-related protein 1-like [Cucumis melo var. makuwa] >TYK06842.1 basic form of pathogenesis-related protein 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 8.4e-09
Identity = 40/76 (52.63%), Postives = 46/76 (60.53%), Query Frame = 0

Query: 11 PHLRRKLP-NYTAAHNAIR-----------------AKNYANTKITTCKMEHSRGPYGEN 69
          P L +  P NY  AHNAIR                 A+NYANTKI TC+MEHS GPYGEN
Sbjct: 24 PILAKSYPKNYVDAHNAIRAEVGVDPLHWNSTLAAYAQNYANTKIATCQMEHSGGPYGEN 83

BLAST of Clc02G07610 vs. NCBI nr
Match: XP_004137080.2 (pathogenesis-related protein 1A [Cucumis sativus] >KGN43826.1 hypothetical protein Csa_017168 [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 1.1e-08
Identity = 39/76 (51.32%), Postives = 47/76 (61.84%), Query Frame = 0

Query: 11  PHLRRKLP-NYTAAHNAIR-----------------AKNYANTKITTCKMEHSRGPYGEN 69
           P L +  P NY  AHNA+R                 A+NYANTKI TC+MEHS GPYGEN
Sbjct: 30  PSLAKSSPKNYIDAHNAVRAAVGVEPLHWNSTLADYAQNYANTKIATCQMEHSGGPYGEN 89

BLAST of Clc02G07610 vs. NCBI nr
Match: KAG6588723.1 (hypothetical protein SDJN03_17288, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 59.7 bits (143), Expect = 1.1e-05
Identity = 32/67 (47.76%), Postives = 39/67 (58.21%), Query Frame = 0

Query: 19 NYTAAHNAIR-----------------AKNYANTKITTCKMEHSRGPYGENLTKGYKMMT 69
          +Y  AHNAIR                 A+NYA TKI +C+M HS GPYGENL +GY+ MT
Sbjct: 33 DYVDAHNAIRAEVGVEPLQWNETLATYAQNYAETKIASCEMVHSGGPYGENLAEGYEEMT 92

BLAST of Clc02G07610 vs. NCBI nr
Match: XP_022927709.1 (pathogenesis-related protein 1A-like [Cucurbita moschata])

HSP 1 Score: 59.7 bits (143), Expect = 1.1e-05
Identity = 32/67 (47.76%), Postives = 39/67 (58.21%), Query Frame = 0

Query: 19  NYTAAHNAIR-----------------AKNYANTKITTCKMEHSRGPYGENLTKGYKMMT 69
           +Y  AHNAIR                 A+NYA TKI +C+M HS GPYGENL +GY+ MT
Sbjct: 43  DYVDAHNAIRAEVGVEPLQWNETLATYAQNYAETKIASCEMVHSGGPYGENLAEGYEEMT 102

BLAST of Clc02G07610 vs. ExPASy TrEMBL
Match: A0A5A7SPC2 (Basic form of pathogenesis-related protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001460 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 4.1e-09
Identity = 40/76 (52.63%), Postives = 46/76 (60.53%), Query Frame = 0

Query: 11 PHLRRKLP-NYTAAHNAIR-----------------AKNYANTKITTCKMEHSRGPYGEN 69
          P L +  P NY  AHNAIR                 A+NYANTKI TC+MEHS GPYGEN
Sbjct: 24 PILAKSYPKNYVDAHNAIRAEVGVDPLHWNSTLAAYAQNYANTKIATCQMEHSGGPYGEN 83

BLAST of Clc02G07610 vs. ExPASy TrEMBL
Match: A0A1S3C0S3 (basic form of pathogenesis-related protein 1-like OS=Cucumis melo OX=3656 GN=LOC103495334 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 4.1e-09
Identity = 40/76 (52.63%), Postives = 46/76 (60.53%), Query Frame = 0

Query: 11 PHLRRKLP-NYTAAHNAIR-----------------AKNYANTKITTCKMEHSRGPYGEN 69
          P L +  P NY  AHNAIR                 A+NYANTKI TC+MEHS GPYGEN
Sbjct: 24 PILAKSYPKNYVDAHNAIRAEVGVDPLHWNSTLAAYAQNYANTKIATCQMEHSGGPYGEN 83

BLAST of Clc02G07610 vs. ExPASy TrEMBL
Match: A0A0A0K7N5 (SCP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G070232 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.3e-09
Identity = 39/76 (51.32%), Postives = 47/76 (61.84%), Query Frame = 0

Query: 11  PHLRRKLP-NYTAAHNAIR-----------------AKNYANTKITTCKMEHSRGPYGEN 69
           P L +  P NY  AHNA+R                 A+NYANTKI TC+MEHS GPYGEN
Sbjct: 30  PSLAKSSPKNYIDAHNAVRAAVGVEPLHWNSTLADYAQNYANTKIATCQMEHSGGPYGEN 89

BLAST of Clc02G07610 vs. ExPASy TrEMBL
Match: A0A6J1EIR8 (pathogenesis-related protein 1A-like OS=Cucurbita moschata OX=3662 GN=LOC111434528 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.5e-06
Identity = 32/67 (47.76%), Postives = 39/67 (58.21%), Query Frame = 0

Query: 19  NYTAAHNAIR-----------------AKNYANTKITTCKMEHSRGPYGENLTKGYKMMT 69
           +Y  AHNAIR                 A+NYA TKI +C+M HS GPYGENL +GY+ MT
Sbjct: 43  DYVDAHNAIRAEVGVEPLQWNETLATYAQNYAETKIASCEMVHSGGPYGENLAEGYEEMT 102

BLAST of Clc02G07610 vs. ExPASy TrEMBL
Match: A0A6J1JNW9 (basic form of pathogenesis-related protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111486179 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 7.2e-06
Identity = 32/67 (47.76%), Postives = 40/67 (59.70%), Query Frame = 0

Query: 19 NYTAAHNAIR-----------------AKNYANTKITTCKMEHSRGPYGENLTKGYKMMT 69
          ++  AHNAIR                 A+ YA +KITTC+MEHS GPYGENL  GY+ +T
Sbjct: 33 DFVDAHNAIRAEVGVEPLKWNETLATYAQKYAESKITTCEMEHSGGPYGENLAVGYEGIT 92

BLAST of Clc02G07610 vs. TAIR 10
Match: AT2G14580.1 (basic pathogenesis-related protein 1 )

HSP 1 Score: 40.4 bits (93), Expect = 6.6e-04
Identity = 18/30 (60.00%), Postives = 21/30 (70.00%), Query Frame = 0

Query: 26 AIRAKNYANTKITTCKMEHSRGPYGENLTK 56
          A  A+NYAN     C++ HSRGPYGENL K
Sbjct: 56 AAYARNYANQLKGDCRLVHSRGPYGENLAK 85

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038888921.13.4e-1058.21basic form of pathogenesis-related protein 1-like [Benincasa hispida][more]
XP_008455069.18.4e-0952.63PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis melo] >KAA... [more]
XP_004137080.21.1e-0851.32pathogenesis-related protein 1A [Cucumis sativus] >KGN43826.1 hypothetical prote... [more]
KAG6588723.11.1e-0547.76hypothetical protein SDJN03_17288, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022927709.11.1e-0547.76pathogenesis-related protein 1A-like [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SPC24.1e-0952.63Basic form of pathogenesis-related protein 1-like OS=Cucumis melo var. makuwa OX... [more]
A0A1S3C0S34.1e-0952.63basic form of pathogenesis-related protein 1-like OS=Cucumis melo OX=3656 GN=LOC... [more]
A0A0A0K7N55.3e-0951.32SCP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G070232 PE=4 SV... [more]
A0A6J1EIR85.5e-0647.76pathogenesis-related protein 1A-like OS=Cucurbita moschata OX=3662 GN=LOC1114345... [more]
A0A6J1JNW97.2e-0647.76basic form of pathogenesis-related protein 1-like OS=Cucurbita maxima OX=3661 GN... [more]
Match NameE-valueIdentityDescription
AT2G14580.16.6e-0460.00basic pathogenesis-related protein 1 [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR035940CAP superfamilySUPERFAMILY55797PR-1-likecoord: 21..65

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc02G07610.1Clc02G07610.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005576 extracellular region