Clc02G07610 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTAACCAGAACCCTATCCTACATTGCCCCCATCTTCGCCGAAAGCTACCCAACTACACTGCTGCCCACAATGCAATCCGCGCGAAAGTTAGTGTCCTGTCCCTCCATTAATAACCACTCTGGCTGCTTATGCTCAGAACTATGCCAACACGAAGATCACTACTTGTAAAATGGAGCACTCTAGAGGACCTTATGGCGAGAACCTAACGAAGGGGTACAAAATGATGACAGCAGAGACAACAATGAGTCTCTAA ATGGCTAACCAGAACCCTATCCTACATTGCCCCCATCTTCGCCGAAAGCTACCCAACTACACTGCTGCCCACAATGCAATCCGCGCGAAAAACTATGCCAACACGAAGATCACTACTTGTAAAATGGAGCACTCTAGAGGACCTTATGGCGAGAACCTAACGAAGGGGTACAAAATGATGACAGCAGAGACAACAATGAGTCTCTAA ATGGCTAACCAGAACCCTATCCTACATTGCCCCCATCTTCGCCGAAAGCTACCCAACTACACTGCTGCCCACAATGCAATCCGCGCGAAAAACTATGCCAACACGAAGATCACTACTTGTAAAATGGAGCACTCTAGAGGACCTTATGGCGAGAACCTAACGAAGGGGTACAAAATGATGACAGCAGAGACAACAATGAGTCTCTAA MANQNPILHCPHLRRKLPNYTAAHNAIRAKNYANTKITTCKMEHSRGPYGENLTKGYKMMTAETTMSL Homology
BLAST of Clc02G07610 vs. NCBI nr
Match: XP_038888921.1 (basic form of pathogenesis-related protein 1-like [Benincasa hispida]) HSP 1 Score: 74.7 bits (182), Expect = 3.4e-10 Identity = 39/67 (58.21%), Postives = 45/67 (67.16%), Query Frame = 0
BLAST of Clc02G07610 vs. NCBI nr
Match: XP_008455069.1 (PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis melo] >KAA0031391.1 basic form of pathogenesis-related protein 1-like [Cucumis melo var. makuwa] >TYK06842.1 basic form of pathogenesis-related protein 1-like [Cucumis melo var. makuwa]) HSP 1 Score: 70.1 bits (170), Expect = 8.4e-09 Identity = 40/76 (52.63%), Postives = 46/76 (60.53%), Query Frame = 0
BLAST of Clc02G07610 vs. NCBI nr
Match: XP_004137080.2 (pathogenesis-related protein 1A [Cucumis sativus] >KGN43826.1 hypothetical protein Csa_017168 [Cucumis sativus]) HSP 1 Score: 69.7 bits (169), Expect = 1.1e-08 Identity = 39/76 (51.32%), Postives = 47/76 (61.84%), Query Frame = 0
BLAST of Clc02G07610 vs. NCBI nr
Match: KAG6588723.1 (hypothetical protein SDJN03_17288, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 59.7 bits (143), Expect = 1.1e-05 Identity = 32/67 (47.76%), Postives = 39/67 (58.21%), Query Frame = 0
BLAST of Clc02G07610 vs. NCBI nr
Match: XP_022927709.1 (pathogenesis-related protein 1A-like [Cucurbita moschata]) HSP 1 Score: 59.7 bits (143), Expect = 1.1e-05 Identity = 32/67 (47.76%), Postives = 39/67 (58.21%), Query Frame = 0
BLAST of Clc02G07610 vs. ExPASy TrEMBL
Match: A0A5A7SPC2 (Basic form of pathogenesis-related protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001460 PE=4 SV=1) HSP 1 Score: 70.1 bits (170), Expect = 4.1e-09 Identity = 40/76 (52.63%), Postives = 46/76 (60.53%), Query Frame = 0
BLAST of Clc02G07610 vs. ExPASy TrEMBL
Match: A0A1S3C0S3 (basic form of pathogenesis-related protein 1-like OS=Cucumis melo OX=3656 GN=LOC103495334 PE=4 SV=1) HSP 1 Score: 70.1 bits (170), Expect = 4.1e-09 Identity = 40/76 (52.63%), Postives = 46/76 (60.53%), Query Frame = 0
BLAST of Clc02G07610 vs. ExPASy TrEMBL
Match: A0A0A0K7N5 (SCP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G070232 PE=4 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 5.3e-09 Identity = 39/76 (51.32%), Postives = 47/76 (61.84%), Query Frame = 0
BLAST of Clc02G07610 vs. ExPASy TrEMBL
Match: A0A6J1EIR8 (pathogenesis-related protein 1A-like OS=Cucurbita moschata OX=3662 GN=LOC111434528 PE=4 SV=1) HSP 1 Score: 59.7 bits (143), Expect = 5.5e-06 Identity = 32/67 (47.76%), Postives = 39/67 (58.21%), Query Frame = 0
BLAST of Clc02G07610 vs. ExPASy TrEMBL
Match: A0A6J1JNW9 (basic form of pathogenesis-related protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111486179 PE=4 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 7.2e-06 Identity = 32/67 (47.76%), Postives = 40/67 (59.70%), Query Frame = 0
BLAST of Clc02G07610 vs. TAIR 10
Match: AT2G14580.1 (basic pathogenesis-related protein 1 ) HSP 1 Score: 40.4 bits (93), Expect = 6.6e-04 Identity = 18/30 (60.00%), Postives = 21/30 (70.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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