Clc02G02170 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G02170
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Protein of unknown function (DUF1068)
Location	ClcChr02: 2009437 .. 2009709 (+)
RNA-Seq Expression	Clc02G02170
Synteny	Clc02G02170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAATTCAACCCAGTTCTTGCAATCCTTCACTCATCAAGTTCGGATTGGCTTTGATCGCCATCTCCATTGCCGGTTACATTATCGGCCCTCCTCTCTATTGGCACTTCAAGGAAGGTTTAGCCGTCGTTAGCCACTCTTCTTCTTCCTCATGCCCTCCTTGTTTCTGCGACTGCCCTTCTCAGCCTGTCATCTCTATTCCCGAAGGTATCTCTTTATTTCTTCTTTCTTATTGCTCAGATCCGTTTAGATCTCTTTTGGGGTTCCCTTAA

mRNA sequence

ATGGCAATTCAACCCAGTTCTTGCAATCCTTCACTCATCAAGTTCGGATTGGCTTTGATCGCCATCTCCATTGCCGGTTACATTATCGGCCCTCCTCTCTATTGGCACTTCAAGGAAGGTTTAGCCGTCGTTAGCCACTCTTCTTCTTCCTCATGCCCTCCTTGTTTCTGCGACTGCCCTTCTCAGCCTGTCATCTCTATTCCCGAAGGTATCTCTTTATTTCTTCTTTCTTATTGCTCAGATCCGTTTAGATCTCTTTTGGGGTTCCCTTAA

Coding sequence (CDS)

ATGGCAATTCAACCCAGTTCTTGCAATCCTTCACTCATCAAGTTCGGATTGGCTTTGATCGCCATCTCCATTGCCGGTTACATTATCGGCCCTCCTCTCTATTGGCACTTCAAGGAAGGTTTAGCCGTCGTTAGCCACTCTTCTTCTTCCTCATGCCCTCCTTGTTTCTGCGACTGCCCTTCTCAGCCTGTCATCTCTATTCCCGAAGGTATCTCTTTATTTCTTCTTTCTTATTGCTCAGATCCGTTTAGATCTCTTTTGGGGTTCCCTTAA

Protein sequence

MAIQPSSCNPSLIKFGLALIAISIAGYIIGPPLYWHFKEGLAVVSHSSSSSCPPCFCDCPSQPVISIPEGISLFLLSYCSDPFRSLLGFP

Homology

[Close]

BLAST of Clc02G02170 vs. NCBI nr
Match: KAA0040228.1 (uncharacterized protein E6C27_scaffold888G00110 [Cucumis melo var. makuwa] >TYK07120.1 uncharacterized protein E5676_scaffold13G004410 [Cucumis melo var. makuwa])

HSP 1 Score: 155.2 bits (391), Expect = 2.6e-34
Identity = 76/87 (87.36%), Postives = 79/87 (90.80%), Query Frame = 0


Query: 1  MAIQPSSCNPSLIKFGLALIAISIAGYIIGPPLYWHFKEGLAVVSHSS-SSSCPPCFCDC 60
          MAIQP+SCNPSLIK GLALIAI+I GYI+GPPLYWHFKEGLAVVSHSS SSSCPPCFCDC
Sbjct: 1  MAIQPTSCNPSLIKLGLALIAITIVGYILGPPLYWHFKEGLAVVSHSSASSSCPPCFCDC 60

Query: 61 PSQPVISIPEGISLFLLSYCS---DPF 84
          PSQPVISIPEGISLFLLSY     DPF
Sbjct: 61 PSQPVISIPEGISLFLLSYSQIRLDPF 87

[Close]

BLAST of Clc02G02170 vs. NCBI nr
Match: XP_038888598.1 (uncharacterized protein LOC120078397 [Benincasa hispida])

HSP 1 Score: 142.5 bits (358), Expect = 1.8e-30
Identity = 66/69 (95.65%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1  MAIQPSSCNPSLIKFGLALIAISIAGYIIGPPLYWHFKEGLAVVSHSSSSSCPPCFCDCP 60
          MAIQ SSCNPSLIKFGLALIAISI GYI+GPPLYWHFKEGLAVVSHSSSSSCPPCFCDCP
Sbjct: 1  MAIQHSSCNPSLIKFGLALIAISITGYILGPPLYWHFKEGLAVVSHSSSSSCPPCFCDCP 60

Query: 61 SQPVISIPE 70
          SQPVISIPE
Sbjct: 61 SQPVISIPE 69

[Close]

BLAST of Clc02G02170 vs. NCBI nr
Match: XP_008455457.1 (PREDICTED: uncharacterized protein LOC103495614 isoform X1 [Cucumis melo] >XP_016901761.1 PREDICTED: uncharacterized protein LOC103495614 isoform X2 [Cucumis melo])

HSP 1 Score: 136.7 bits (343), Expect = 9.7e-29
Identity = 64/70 (91.43%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 1  MAIQPSSCNPSLIKFGLALIAISIAGYIIGPPLYWHFKEGLAVVSHSS-SSSCPPCFCDC 60
          MAIQP+SCNPSLIK GLALIAI+I GYI+GPPLYWHFKEGLAVVSHSS SSSCPPCFCDC
Sbjct: 1  MAIQPTSCNPSLIKLGLALIAITIVGYILGPPLYWHFKEGLAVVSHSSASSSCPPCFCDC 60

Query: 61 PSQPVISIPE 70
          PSQPVISIPE
Sbjct: 61 PSQPVISIPE 70

[Close]

BLAST of Clc02G02170 vs. NCBI nr
Match: XP_004144504.1 (uncharacterized protein LOC101202853 isoform X1 [Cucumis sativus] >XP_011658696.1 uncharacterized protein LOC101202853 isoform X2 [Cucumis sativus] >KGN43503.1 hypothetical protein Csa_020577 [Cucumis sativus])

HSP 1 Score: 134.8 bits (338), Expect = 3.7e-28
Identity = 63/70 (90.00%), Postives = 66/70 (94.29%), Query Frame = 0


Query: 1  MAIQPSSCNPSLIKFGLALIAISIAGYIIGPPLYWHFKEGLAVVSH-SSSSSCPPCFCDC 60
          MAIQPSSCNPSLIK GLALIAI+I GYI+GPPLYWHFKEGLAVV+H SSSSSCPPCFCDC
Sbjct: 1  MAIQPSSCNPSLIKLGLALIAITIVGYILGPPLYWHFKEGLAVVTHSSSSSSCPPCFCDC 60

Query: 61 PSQPVISIPE 70
          PS PVISIPE
Sbjct: 61 PSHPVISIPE 70

[Close]

BLAST of Clc02G02170 vs. NCBI nr
Match: KAG7011900.1 (hypothetical protein SDJN02_26807, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 131.3 bits (329), Expect = 4.1e-27
Identity = 61/70 (87.14%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 1  MAIQPSSCNPSLIKFGLALIAISIAGYIIGPPLYWHFKEGLAVVSH-SSSSSCPPCFCDC 60
          MAIQ SSCNPSLIKFGLALIA+SIAGYI+GPPLYWHFKEGLAVV+  SSSSSCPPCFCDC
Sbjct: 1  MAIQASSCNPSLIKFGLALIALSIAGYILGPPLYWHFKEGLAVVTRSSSSSSCPPCFCDC 60

Query: 61 PSQPVISIPE 70
          PSQP+I+IP+
Sbjct: 61 PSQPLITIPQ 70

[Close]

BLAST of Clc02G02170 vs. ExPASy TrEMBL
Match: A0A5D3C708 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G004410 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.3e-34
Identity = 76/87 (87.36%), Postives = 79/87 (90.80%), Query Frame = 0


Query: 1  MAIQPSSCNPSLIKFGLALIAISIAGYIIGPPLYWHFKEGLAVVSHSS-SSSCPPCFCDC 60
          MAIQP+SCNPSLIK GLALIAI+I GYI+GPPLYWHFKEGLAVVSHSS SSSCPPCFCDC
Sbjct: 1  MAIQPTSCNPSLIKLGLALIAITIVGYILGPPLYWHFKEGLAVVSHSSASSSCPPCFCDC 60

Query: 61 PSQPVISIPEGISLFLLSYCS---DPF 84
          PSQPVISIPEGISLFLLSY     DPF
Sbjct: 61 PSQPVISIPEGISLFLLSYSQIRLDPF 87

[Close]

BLAST of Clc02G02170 vs. ExPASy TrEMBL
Match: A0A1S3C135 (uncharacterized protein LOC103495614 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495614 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 4.7e-29
Identity = 64/70 (91.43%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 1  MAIQPSSCNPSLIKFGLALIAISIAGYIIGPPLYWHFKEGLAVVSHSS-SSSCPPCFCDC 60
          MAIQP+SCNPSLIK GLALIAI+I GYI+GPPLYWHFKEGLAVVSHSS SSSCPPCFCDC
Sbjct: 1  MAIQPTSCNPSLIKLGLALIAITIVGYILGPPLYWHFKEGLAVVSHSSASSSCPPCFCDC 60

Query: 61 PSQPVISIPE 70
          PSQPVISIPE
Sbjct: 61 PSQPVISIPE 70

[Close]

BLAST of Clc02G02170 vs. ExPASy TrEMBL
Match: A0A0A0K245 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G041970 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.8e-28
Identity = 63/70 (90.00%), Postives = 66/70 (94.29%), Query Frame = 0


Query: 1  MAIQPSSCNPSLIKFGLALIAISIAGYIIGPPLYWHFKEGLAVVSH-SSSSSCPPCFCDC 60
          MAIQPSSCNPSLIK GLALIAI+I GYI+GPPLYWHFKEGLAVV+H SSSSSCPPCFCDC
Sbjct: 1  MAIQPSSCNPSLIKLGLALIAITIVGYILGPPLYWHFKEGLAVVTHSSSSSSCPPCFCDC 60

Query: 61 PSQPVISIPE 70
          PS PVISIPE
Sbjct: 61 PSHPVISIPE 70

[Close]

BLAST of Clc02G02170 vs. ExPASy TrEMBL
Match: A0A6J1GK01 (uncharacterized protein LOC111455059 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111455059 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 2.0e-27
Identity = 61/70 (87.14%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 1  MAIQPSSCNPSLIKFGLALIAISIAGYIIGPPLYWHFKEGLAVVSH-SSSSSCPPCFCDC 60
          MAIQ SSCNPSLIKFGLALIA+SIAGYI+GPPLYWHFKEGLAVV+  SSSSSCPPCFCDC
Sbjct: 1  MAIQASSCNPSLIKFGLALIALSIAGYILGPPLYWHFKEGLAVVTRSSSSSSCPPCFCDC 60

Query: 61 PSQPVISIPE 70
          PSQP+I+IP+
Sbjct: 61 PSQPLITIPQ 70

[Close]

BLAST of Clc02G02170 vs. ExPASy TrEMBL
Match: A0A6J1HXB7 (uncharacterized protein LOC111468321 OS=Cucurbita maxima OX=3661 GN=LOC111468321 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 9.8e-27
Identity = 60/70 (85.71%), Postives = 66/70 (94.29%), Query Frame = 0


Query: 1  MAIQPSSCNPSLIKFGLALIAISIAGYIIGPPLYWHFKEGLAVVSH-SSSSSCPPCFCDC 60
          MAIQ SSCNPSLIKFGLALIA+SIAGYI+ PPLYWHFKEGLAVV+  SSSSSCPPCFCDC
Sbjct: 1  MAIQASSCNPSLIKFGLALIALSIAGYILAPPLYWHFKEGLAVVTRSSSSSSCPPCFCDC 60

Query: 61 PSQPVISIPE 70
          PSQP+I+IP+
Sbjct: 61 PSQPLITIPQ 70

[Close]

BLAST of Clc02G02170 vs. TAIR 10
Match: AT2G32580.1 (Protein of unknown function (DUF1068) )

HSP 1 Score: 77.0 bits (188), Expect = 8.5e-15
Identity = 34/60 (56.67%), Postives = 45/60 (75.00%), Query Frame = 0


Query: 13 IKFGLALIAISIAGYIIGPPLYWHFKEGLAVVSHSSSSSCPPCFCDCPSQPVISIPEGIS 72
          +K GLAL+A+S+ GYI+GPPLYWH  E LAV    S++SC  C CDC S P+++IP G+S
Sbjct: 8  LKVGLALLALSMIGYILGPPLYWHLTEALAV----SATSCSACVCDCSSLPLLTIPTGLS 63

[Close]

BLAST of Clc02G02170 vs. TAIR 10
Match: AT1G05070.1 (Protein of unknown function (DUF1068) )

HSP 1 Score: 73.9 bits (180), Expect = 7.2e-14
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 0


Query: 13 IKFGLALIAISIAGYIIGPPLYWHFKEGLAVVSHSSSSSCPPCFCDCPSQPVISIPEGIS 72
          +K GLAL+ +S+AGYI+GPPLYWH  E LA V   S+SSCP C C+C +   ++IP+ +S
Sbjct: 8  LKIGLALLGLSMAGYILGPPLYWHLTEALAAV---SASSCPSCPCECSTYSAVTIPKELS 67

Query: 73 LFLLSYCS 81
              + C+
Sbjct: 68 NASFADCA 72

[Close]

BLAST of Clc02G02170 vs. TAIR 10
Match: AT4G04360.1 (Protein of unknown function (DUF1068) )

HSP 1 Score: 67.8 bits (164), Expect = 5.1e-12
Identity = 29/54 (53.70%), Postives = 37/54 (68.52%), Query Frame = 0


Query: 19 LIAISIAGYIIGPPLYWHFKEGLAVVSHSSSSSCPPCFCDCPSQPVISIPEGIS 73
          ++ + I  YI GP LYWH  E +A   H   SSCPPC CDC SQP++SIP+G+S
Sbjct: 15 VMGLCIVAYIAGPSLYWHLNETIADSLH---SSCPPCVCDCSSQPLLSIPDGLS 65

[Close]

BLAST of Clc02G02170 vs. TAIR 10
Match: AT4G30996.1 (Protein of unknown function (DUF1068) )

HSP 1 Score: 48.1 bits (113), Expect = 4.2e-06
Identity = 24/64 (37.50%), Postives = 36/64 (56.25%), Query Frame = 0


Query: 17 LALIAISIAGYIIGPPLYWHFKEGLAVVSHSSSSSCPPCFCDCPSQ-PVISIPEGISLFL 76
          L + A+  A  + GP LYW F +G  V S  ++S CPPC CDCP    ++ I  G++   
Sbjct: 12 LVIFAVVSALVVCGPALYWKFNKGF-VGSTRANSLCPPCVCDCPPPLSLLQIAPGLANLS 71

Query: 77 LSYC 80
          ++ C
Sbjct: 72 ITDC 74

The following BLAST results are available for this feature:

BLAST of Clc02G02170 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040228.1	2.6e-34	87.36	uncharacterized protein E6C27_scaffold888G00110 [Cucumis melo var. makuwa] >TYK0...	[more]
XP_038888598.1	1.8e-30	95.65	uncharacterized protein LOC120078397 [Benincasa hispida]	[more]
XP_008455457.1	9.7e-29	91.43	PREDICTED: uncharacterized protein LOC103495614 isoform X1 [Cucumis melo] >XP_01...	[more]
XP_004144504.1	3.7e-28	90.00	uncharacterized protein LOC101202853 isoform X1 [Cucumis sativus] >XP_011658696....	[more]
KAG7011900.1	4.1e-27	87.14	hypothetical protein SDJN02_26807, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Clc02G02170 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc02G02170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C708	1.3e-34	87.36	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3C135	4.7e-29	91.43	uncharacterized protein LOC103495614 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0K245	1.8e-28	90.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G041970 PE=4 SV=1	[more]
A0A6J1GK01	2.0e-27	87.14	uncharacterized protein LOC111455059 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1HXB7	9.8e-27	85.71	uncharacterized protein LOC111468321 OS=Cucurbita maxima OX=3661 GN=LOC111468321...	[more]

BLAST of Clc02G02170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G32580.1	8.5e-15	56.67	Protein of unknown function (DUF1068)	[more]
AT1G05070.1	7.2e-14	48.53	Protein of unknown function (DUF1068)	[more]
AT4G04360.1	5.1e-12	53.70	Protein of unknown function (DUF1068)	[more]
AT4G30996.1	4.2e-06	37.50	Protein of unknown function (DUF1068)	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010471	Protein of unknown function DUF1068	PFAM	PF06364	DUF1068	coord: 11..80 e-value: 1.6E-21 score: 76.9
None	No IPR available	PANTHER	PTHR32254	EXPRESSED PROTEIN	coord: 6..79
None	No IPR available	PANTHER	PTHR32254:SF16	SUBFAMILY NOT NAMED	coord: 6..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G02170.2	Clc02G02170.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane