Clc01G13520 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AATTTCTCTTTCCCCTTCGATGGCGACTGGTAAGAGTTACTTCTCTCGCTCCAAGTTCCGCTTTCTTCCCGCCGGCGATGGACCCGACCACCGCCGTGGCGACGCCGTCTTCGATTTTGACGAGTCCGACCTCTTCAACCCCCCGCACTCCGGAACCTCCCCGGAGTTCCGTCGTTCGGCCACCAAAAAGCGAATCTCAAAGCGGATTTCGCCTGTCGACGCCGGAGACCGGAGCGTAACGACGGTGTCTGCAGCGTCTCTGCCGGTCAACATCCCTGACTGGTCGAAGATCCTGAGAAACGAGTATATCGAGAATCGGAGAGACGACTTCGACGACGACGAGGATGAAGACGGCGGCGGCGGCCATGACTTCGAGGAAGGACGATTTAGGGTTCCGCCGCATGAATTTCTGGCGAAGACAAGAATCGCTTCGTTTTCGGTTCACGAAGGAATCGGAAGAACGTTGAAAGGGAGAGATCTGAGCAGAGTTCGAGATGCGATTTGGCAAAAAACTGGATTTGAAGATTGATTGGATTGAATTGAATTTGAACAAACACGAAGAACAATTATCGCAAAAAAAAAAAAAAAAAAAATCGGAATATTCCAATAGAATATACCAATTCCTTCCATGAGTAAGACTTTTGATCTCTCTTCCACCAAAATTTTTGATCGTTTCCTCTTCCTCTGTTAATTTTTTTCCGCCTTTTGGCCGTCGCATCTGGGCGGCGTTTCGATCGCTCCGACCATCGTTTTCTTTTTCATATCTGTAATTCGGAATATTTTGTATTTTGAATTTCACGAGAAGAATAGAAATATTTTGTACTTTTTTTTTTTTTTTTACTTATTGGTATTATTTTTTTTCCCTCTTCTTCGTTCAAGATTAAATTTGTAGGGCAATTTGGGAAATGTAATGAACTGATCTGAAAAGATGCCCTCTTTAATGGCTATTTAAAAAGAAATTAAAATAAAGAAGTACAATTTTCTTTTTTCTTTTTTTGTTGAAGTATATTAGAATTATTTAATCAATTACTTTGTTTGGTTGGTTGATTTTATTTAAACAGAAGAGAGACTTCTACTCCTCTTTAATT AATTTCTCTTTCCCCTTCGATGGCGACTGGTAAGAGTTACTTCTCTCGCTCCAAGTTCCGCTTTCTTCCCGCCGGCGATGGACCCGACCACCGCCGTGGCGACGCCGTCTTCGATTTTGACGAGTCCGACCTCTTCAACCCCCCGCACTCCGGAACCTCCCCGGAGTTCCGTCGTTCGGCCACCAAAAAGCGAATCTCAAAGCGGATTTCGCCTGTCGACGCCGGAGACCGGAGCGTAACGACGGTGTCTGCAGCGTCTCTGCCGGTCAACATCCCTGACTGGTCGAAGATCCTGAGAAACGAGTATATCGAGAATCGGAGAGACGACTTCGACGACGACGAGGATGAAGACGGCGGCGGCGGCCATGACTTCGAGGAAGGACGATTTAGGGTTCCGCCGCATGAATTTCTGGCGAAGACAAGAATCGCTTCGTTTTCGGTTCACGAAGGAATCGGAAGAACGTTGAAAGGGAGAGATCTGAGCAGAGTTCGAGATGCGATTTGGCAAAAAACTGGATTTGAAGATTGATTGGATTGAATTGAATTTGAACAAACACGAAGAACAATTATCGCAAAAAAAAAAAAAAAAAAAATCGGAATATTCCAATAGAATATACCAATTCCTTCCATGAGTAAGACTTTTGATCTCTCTTCCACCAAAATTTTTGATCGTTTCCTCTTCCTCTGTTAATTTTTTTCCGCCTTTTGGCCGTCGCATCTGGGCGGCGTTTCGATCGCTCCGACCATCGTTTTCTTTTTCATATCTGTAATTCGGAATATTTTGTATTTTGAATTTCACGAGAAGAATAGAAATATTTTGTACTTTTTTTTTTTTTTTTACTTATTGGTATTATTTTTTTTCCCTCTTCTTCGTTCAAGATTAAATTTGTAGGGCAATTTGGGAAATGTAATGAACTGATCTGAAAAGATGCCCTCTTTAATGGCTATTTAAAAAGAAATTAAAATAAAGAAGTACAATTTTCTTTTTTCTTTTTTTGTTGAAGTATATTAGAATTATTTAATCAATTACTTTGTTTGGTTGGTTGATTTTATTTAAACAGAAGAGAGACTTCTACTCCTCTTTAATT ATGGCGACTGGTAAGAGTTACTTCTCTCGCTCCAAGTTCCGCTTTCTTCCCGCCGGCGATGGACCCGACCACCGCCGTGGCGACGCCGTCTTCGATTTTGACGAGTCCGACCTCTTCAACCCCCCGCACTCCGGAACCTCCCCGGAGTTCCGTCGTTCGGCCACCAAAAAGCGAATCTCAAAGCGGATTTCGCCTGTCGACGCCGGAGACCGGAGCGTAACGACGGTGTCTGCAGCGTCTCTGCCGGTCAACATCCCTGACTGGTCGAAGATCCTGAGAAACGAGTATATCGAGAATCGGAGAGACGACTTCGACGACGACGAGGATGAAGACGGCGGCGGCGGCCATGACTTCGAGGAAGGACGATTTAGGGTTCCGCCGCATGAATTTCTGGCGAAGACAAGAATCGCTTCGTTTTCGGTTCACGAAGGAATCGGAAGAACGTTGAAAGGGAGAGATCTGAGCAGAGTTCGAGATGCGATTTGGCAAAAAACTGGATTTGAAGATTGA MATGKSYFSRSKFRFLPAGDGPDHRRGDAVFDFDESDLFNPPHSGTSPEFRRSATKKRISKRISPVDAGDRSVTTVSAASLPVNIPDWSKILRNEYIENRRDDFDDDEDEDGGGGHDFEEGRFRVPPHEFLAKTRIASFSVHEGIGRTLKGRDLSRVRDAIWQKTGFED Homology
BLAST of Clc01G13520 vs. NCBI nr
Match: XP_038894808.1 (uncharacterized protein LOC120083221 [Benincasa hispida]) HSP 1 Score: 320.9 bits (821), Expect = 6.8e-84 Identity = 160/170 (94.12%), Postives = 163/170 (95.88%), Query Frame = 0
BLAST of Clc01G13520 vs. NCBI nr
Match: XP_008462513.1 (PREDICTED: uncharacterized protein LOC103500846 [Cucumis melo]) HSP 1 Score: 301.2 bits (770), Expect = 5.6e-78 Identity = 150/169 (88.76%), Postives = 156/169 (92.31%), Query Frame = 0
BLAST of Clc01G13520 vs. NCBI nr
Match: XP_004139450.1 (uncharacterized protein LOC101217269 [Cucumis sativus]) HSP 1 Score: 293.1 bits (749), Expect = 1.5e-75 Identity = 146/169 (86.39%), Postives = 153/169 (90.53%), Query Frame = 0
BLAST of Clc01G13520 vs. NCBI nr
Match: XP_022970343.1 (uncharacterized protein LOC111469336 [Cucurbita maxima]) HSP 1 Score: 285.0 bits (728), Expect = 4.1e-73 Identity = 143/173 (82.66%), Postives = 151/173 (87.28%), Query Frame = 0
BLAST of Clc01G13520 vs. NCBI nr
Match: XP_023519114.1 (uncharacterized protein LOC111782574 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 283.9 bits (725), Expect = 9.2e-73 Identity = 142/173 (82.08%), Postives = 151/173 (87.28%), Query Frame = 0
BLAST of Clc01G13520 vs. ExPASy TrEMBL
Match: A0A1S3CH53 (uncharacterized protein LOC103500846 OS=Cucumis melo OX=3656 GN=LOC103500846 PE=4 SV=1) HSP 1 Score: 301.2 bits (770), Expect = 2.7e-78 Identity = 150/169 (88.76%), Postives = 156/169 (92.31%), Query Frame = 0
BLAST of Clc01G13520 vs. ExPASy TrEMBL
Match: A0A0A0LSF7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G132110 PE=4 SV=1) HSP 1 Score: 293.1 bits (749), Expect = 7.3e-76 Identity = 146/169 (86.39%), Postives = 153/169 (90.53%), Query Frame = 0
BLAST of Clc01G13520 vs. ExPASy TrEMBL
Match: A0A6J1I3L6 (uncharacterized protein LOC111469336 OS=Cucurbita maxima OX=3661 GN=LOC111469336 PE=4 SV=1) HSP 1 Score: 285.0 bits (728), Expect = 2.0e-73 Identity = 143/173 (82.66%), Postives = 151/173 (87.28%), Query Frame = 0
BLAST of Clc01G13520 vs. ExPASy TrEMBL
Match: A0A6J1HPB6 (uncharacterized protein LOC111464817 OS=Cucurbita moschata OX=3662 GN=LOC111464817 PE=4 SV=1) HSP 1 Score: 283.1 bits (723), Expect = 7.6e-73 Identity = 143/173 (82.66%), Postives = 152/173 (87.86%), Query Frame = 0
BLAST of Clc01G13520 vs. ExPASy TrEMBL
Match: A0A6J1FJG2 (uncharacterized protein LOC111444460 OS=Cucurbita moschata OX=3662 GN=LOC111444460 PE=4 SV=1) HSP 1 Score: 217.2 bits (552), Expect = 5.1e-53 Identity = 121/173 (69.94%), Postives = 132/173 (76.30%), Query Frame = 0
BLAST of Clc01G13520 vs. TAIR 10
Match: AT5G60680.1 (Protein of unknown function, DUF584 ) HSP 1 Score: 167.2 bits (422), Expect = 1.2e-41 Identity = 92/170 (54.12%), Postives = 121/170 (71.18%), Query Frame = 0
BLAST of Clc01G13520 vs. TAIR 10
Match: AT3G45210.1 (Protein of unknown function, DUF584 ) HSP 1 Score: 137.5 bits (345), Expect = 9.9e-33 Identity = 85/168 (50.60%), Postives = 109/168 (64.88%), Query Frame = 0
BLAST of Clc01G13520 vs. TAIR 10
Match: AT5G03230.1 (Protein of unknown function, DUF584 ) HSP 1 Score: 124.0 bits (310), Expect = 1.1e-28 Identity = 76/173 (43.93%), Postives = 109/173 (63.01%), Query Frame = 0
BLAST of Clc01G13520 vs. TAIR 10
Match: AT2G28400.1 (Protein of unknown function, DUF584 ) HSP 1 Score: 110.2 bits (274), Expect = 1.7e-24 Identity = 76/169 (44.97%), Postives = 94/169 (55.62%), Query Frame = 0
BLAST of Clc01G13520 vs. TAIR 10
Match: AT4G04630.1 (Protein of unknown function, DUF584 ) HSP 1 Score: 89.7 bits (221), Expect = 2.4e-18 Identity = 61/152 (40.13%), Postives = 89/152 (58.55%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
|