Clc01G12800 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc01G12800
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Reverse transcriptase
Location	ClcChr01: 24545538 .. 24546654 (+)
RNA-Seq Expression	Clc01G12800
Synteny	Clc01G12800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGGCAATTGTTCACTGTTTACGGGCTTGGAGACAATATCTGTTAAGGTTCAAGTTCGTAGTCAAGACAGACAATAGCTCGATCTATCACTTCTTCACCCAACCAAAGTTATCGTTCAAGCAGGCTCGATGGCAGGAATGCCTGGTTGAATTCGACTTCCAGTTTGAACATAGACCAGGTAAGGTCAACCAAGCAACAAACACCCTCAGTCGAAAAAGTGAACATGTGGCCCTGTGCTTGTTTGCTCACCTGAAAGCCAATAGCCTGAATGGAACAGTCTGGGAAACCATCAAAACCCACCTACACAATGACACGGCTGCCCAAGCATTAATTTAGTTAGCCAGAGAAGGCAAGACTCGACAGTTTTGGGTGGAAGACAATCTCCTCTTCACCAAGGGAAATCGTCTGTATGTCCCTCAATCTGGGGAGCTACGAAGACTATTATTGAAAGAGTGTCACGATACGCCGTGGGCTGGACACAACGATTGGCAAAGAACGTACGCGCTGTTGAAACTAGCGGGTCTGCTGGAGCCCTTACCAGTGCCCTCAAGGCCATGGGAGAGTGTGTCTCTTGATTTCATCACACGTTTGCCAAAAGTTGGGGAGTTTGAGGCAATACTTGTGATTGTAGACAGGTTTTCGAAATACGCGACATTCGTCTCAACACCAAAATTGTGTTCAGTCGAAATGACGGCTCAGTTGTTCTTCAAACACATTGTGAAACTTTGGGGCATCCCTGCCAGCATTGTAAGCGACCGCAACGCAAGATTCACTAGGACATTCTGGACAGAATTATTTCAGATGTTGGGTTCAACATTGAATATTTCCTCCAGCTATCATCCACAAACTGATGGGTAGACAGAACGCTTCAACAGTATGCTCGAGGAGTATCTCCGACACTTTATTGAAGCGAGATAGAAAAATTGGGTCCAGATGTTGGATGTAGCTTAGTTCAGCTTTAACAGCCAGAAGAGTTCTTCCATCGGTAAGACACCTTTTGAGATTGTATGTGGCAGACAACCACTCATGTCGCACGTCGTTGACCACCCCTATGCGGGTAAGAGCCCGCAAGCACACAACTTCACCAAAGAGTGGAAAGAATCCTCAGAGGTAG

mRNA sequence

ATGCTGGCAATTGTTCACTGTTTACGGGCTTGGAGACAATATCTGTTAAGGTTCAAGTTCGTAGTCAAGACAGACAATAGCTCGATCTATCACTTCTTCACCCAACCAAAGTTATCGTTCAAGCAGGCTCGATGGCAGGAATGCCTGGTTGAATTCGACTTCCAGTTTGAACATAGACCAGCCAGAGAAGGCAAGACTCGACAGTTTTGGGTGGAAGACAATCTCCTCTTCACCAAGGGAAATCGTCTGTATGTCCCTCAATCTGGGGAGCTACGAAGACTATTATTGAAAGAGTGTCACGATACGCCGTGGGCTGGACACAACGATTGGCAAAGAACGTACGCGCTGTTGAAACTAGCGGGTCTGCTGGAGCCCTTACCAGTGCCCTCAAGGCCATGGGAGAGTGTGTCTCTTGATTTCATCACACGTTTGCCAAAAGTTGGGGAGTTTGAGGCAATACTTGTGATTGTAGACAGGTTTTCGAAATACGCGACATTCGTCTCAACACCAAAATTGTGTTCAGTCGAAATGACGGCTCAGTTGTTCTTCAAACACATTGTGAAACTTTGGGGCATCCCTGCCAGCATTGTAAGCGACCGCAACGCAAGATTCACTAGGACATTCTGGACAGAATTATTTCAGATGTTGGGTTCAACATTGAATATTTCCTCCAGCTATCATCCACAAACTGATGGAAGAGTTCTTCCATCGGTAAGACACCTTTTGAGATTGTATGTGGCAGACAACCACTCATGTCGCACGTCGTTGACCACCCCTATGCGGGTAAGAGCCCGCAAGCACACAACTTCACCAAAGAGTGGAAAGAATCCTCAGAGGTAG

Coding sequence (CDS)

ATGCTGGCAATTGTTCACTGTTTACGGGCTTGGAGACAATATCTGTTAAGGTTCAAGTTCGTAGTCAAGACAGACAATAGCTCGATCTATCACTTCTTCACCCAACCAAAGTTATCGTTCAAGCAGGCTCGATGGCAGGAATGCCTGGTTGAATTCGACTTCCAGTTTGAACATAGACCAGCCAGAGAAGGCAAGACTCGACAGTTTTGGGTGGAAGACAATCTCCTCTTCACCAAGGGAAATCGTCTGTATGTCCCTCAATCTGGGGAGCTACGAAGACTATTATTGAAAGAGTGTCACGATACGCCGTGGGCTGGACACAACGATTGGCAAAGAACGTACGCGCTGTTGAAACTAGCGGGTCTGCTGGAGCCCTTACCAGTGCCCTCAAGGCCATGGGAGAGTGTGTCTCTTGATTTCATCACACGTTTGCCAAAAGTTGGGGAGTTTGAGGCAATACTTGTGATTGTAGACAGGTTTTCGAAATACGCGACATTCGTCTCAACACCAAAATTGTGTTCAGTCGAAATGACGGCTCAGTTGTTCTTCAAACACATTGTGAAACTTTGGGGCATCCCTGCCAGCATTGTAAGCGACCGCAACGCAAGATTCACTAGGACATTCTGGACAGAATTATTTCAGATGTTGGGTTCAACATTGAATATTTCCTCCAGCTATCATCCACAAACTGATGGAAGAGTTCTTCCATCGGTAAGACACCTTTTGAGATTGTATGTGGCAGACAACCACTCATGTCGCACGTCGTTGACCACCCCTATGCGGGTAAGAGCCCGCAAGCACACAACTTCACCAAAGAGTGGAAAGAATCCTCAGAGGTAG

Protein sequence

MLAIVHCLRAWRQYLLRFKFVVKTDNSSIYHFFTQPKLSFKQARWQECLVEFDFQFEHRPAREGKTRQFWVEDNLLFTKGNRLYVPQSGELRRLLLKECHDTPWAGHNDWQRTYALLKLAGLLEPLPVPSRPWESVSLDFITRLPKVGEFEAILVIVDRFSKYATFVSTPKLCSVEMTAQLFFKHIVKLWGIPASIVSDRNARFTRTFWTELFQMLGSTLNISSSYHPQTDGRVLPSVRHLLRLYVADNHSCRTSLTTPMRVRARKHTTSPKSGKNPQR

Homology

[Close]

BLAST of Clc01G12800 vs. NCBI nr
Match: KAA0050676.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 355.5 bits (911), Expect = 4.1e-94
Identity = 178/295 (60.34%), Postives = 203/295 (68.81%), Query Frame = 0


Query: 1   MLAIVHCLRAWRQYLLRFKFVVKTDNSSIYHFFTQPKLSFKQARWQECLVEFDFQFEHRP 60
           MLA VHCLRAWRQYLL   FVVKTDNS+  HFFTQPKL+ KQARWQE L EFDF+FEH+ 
Sbjct: 130 MLATVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKK 189

Query: 61  ------------------------------------------------------AREGKT 120
                                                                 A+ GKT
Sbjct: 190 QSSNQAADALSRKQEHAAICLLAHLQGSEIGGSVRDTLREFLQKDHAAQNVMNLAKAGKT 249

Query: 121 RQFWVEDNLLFTKGNRLYVPQSGELRRLLLKECHDTPWAGHNDWQRTYALL--------K 180
           RQFWVE++LL TKGNRLYVP++G+LR+ LL ECHDT WAGH  WQRTYALL        K
Sbjct: 250 RQFWVEEDLLVTKGNRLYVPRAGDLRKKLLYECHDTLWAGHPGWQRTYALLKKDKVEKVK 309

Query: 181 LAGLLEPLPVPSRPWESVSLDFITRLPKVGEFEAILVIVDRFSKYATFVSTPKLCSVEMT 234
           +AGLL+PLPVP+RPWESVS+DFIT LPKVG+FEAILVI+DRFSKYATF+   K CS E T
Sbjct: 310 VAGLLDPLPVPTRPWESVSMDFITHLPKVGDFEAILVIIDRFSKYATFIPATKQCSAETT 369

[Close]

BLAST of Clc01G12800 vs. NCBI nr
Match: KAA0052269.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 352.1 bits (902), Expect = 4.5e-93
Identity = 180/318 (56.60%), Postives = 206/318 (64.78%), Query Frame = 0


Query: 1   MLAIVHCLRAWRQYLLRFKFVVKTDNSSIYHFFTQPKLSFKQARWQECLVEFDFQFEHRP 60
           MLA+VHCLRAWRQYLL   FVVKTDNS+  HFFTQPKL+ KQARWQE LVEFDF+FEH+ 
Sbjct: 1   MLAVVHCLRAWRQYLLGSTFVVKTDNSATCHFFTQPKLTSKQARWQEFLVEFDFEFEHKK 60

Query: 61  ------------------------------------------------------AREGKT 120
                                                                  + GKT
Sbjct: 61  GSNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHAAQNVMNLVKAGKT 120

Query: 121 RQFWVEDNLLFTKGNRLYVPQSGELRRLLLKECHDTPWAGHNDWQRTYALL--------- 180
           RQFWVE++LL TKGNRLYVP++G+LR+ LL ECHDT WAGH  WQRTYALL         
Sbjct: 121 RQFWVEEDLLVTKGNRLYVPRAGDLRKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNM 180

Query: 181 ----------------------KLAGLLEPLPVPSRPWESVSLDFITRLPKVGEFEAILV 234
                                 K+AGLL+PLPVP+RPWESVS+DFIT LPKVG+FEAILV
Sbjct: 181 RDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDFEAILV 240

[Close]

BLAST of Clc01G12800 vs. NCBI nr
Match: TYK01597.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 350.9 bits (899), Expect = 1.0e-92
Identity = 179/318 (56.29%), Postives = 205/318 (64.47%), Query Frame = 0


Query: 1    MLAIVHCLRAWRQYLLRFKFVVKTDNSSIYHFFTQPKLSFKQARWQECLVEFDFQFEHRP 60
            MLA+VHCLRAWRQYLL   FVVKTDNS+  HFFTQPKL+ KQARWQE L EFDF+FEH+ 
Sbjct: 984  MLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKK 1043

Query: 61   ------------------------------------------------------AREGKT 120
                                                                   + GKT
Sbjct: 1044 GSNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHAAQNVMNLVKAGKT 1103

Query: 121  RQFWVEDNLLFTKGNRLYVPQSGELRRLLLKECHDTPWAGHNDWQRTYALL--------- 180
            RQFWVE++LL TKGNRLYVP++G+LR+ LL ECHDT WAGH  WQRTYALL         
Sbjct: 1104 RQFWVEEDLLVTKGNRLYVPRAGDLRKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNM 1163

Query: 181  ----------------------KLAGLLEPLPVPSRPWESVSLDFITRLPKVGEFEAILV 234
                                  K+AGLL+PLPVP+RPWESVS+DFIT LPKVG+FEAILV
Sbjct: 1164 RDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDFEAILV 1223

[Close]

BLAST of Clc01G12800 vs. NCBI nr
Match: KAA0059106.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 348.6 bits (893), Expect = 5.0e-92
Identity = 178/319 (55.80%), Postives = 203/319 (63.64%), Query Frame = 0


Query: 1    MLAIVHCLRAWRQYLLRFKFVVKTDNSSIYHFFTQPKLSFKQARWQECLVEFDFQFEHRP 60
            MLA+VHCLRAWRQYLL   FVVKTDNS+  HFFTQPKL+ KQARWQE L EFDF+FEH+ 
Sbjct: 800  MLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKK 859

Query: 61   ------------------------------------------------------AREGKT 120
                                                                  A+ GKT
Sbjct: 860  GSSNQAADALSRKQEHAAICLLAHLQESEIGGSVRDTLREFLQKDHAAQNVMNLAKAGKT 919

Query: 121  RQFWVEDNLLFTKGNRLYVPQSGELRRLLLKECHDTPWAGHNDWQRTYALL--------- 180
            RQFWVED+L  TKGNRLYVP++G LR+ LL ECHDT WAGH  WQRTYALL         
Sbjct: 920  RQFWVEDDLFVTKGNRLYVPRAGNLRKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNM 979

Query: 181  ----------------------KLAGLLEPLPVPSRPWESVSLDFITRLPKVGEFEAILV 235
                                  K+AGLL+PLPVP+RPWESVS+DFIT LPKVG+FEAILV
Sbjct: 980  RDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDFEAILV 1039

[Close]

BLAST of Clc01G12800 vs. NCBI nr
Match: KAA0039608.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 348.6 bits (893), Expect = 5.0e-92
Identity = 179/318 (56.29%), Postives = 205/318 (64.47%), Query Frame = 0


Query: 1    MLAIVHCLRAWRQYLLRFKFVVKTDNSSIYHFFTQPKLSFKQARWQECLVEFDFQFEHRP 60
            MLA+VHCLRAWRQYLL   FVVKTDNS+  HFFTQPKL+ KQARWQE L EFDF+FEH+ 
Sbjct: 935  MLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKK 994

Query: 61   ------------------------------------------------------AREGKT 120
                                                                  A+ GKT
Sbjct: 995  GSSNQAADALSRKQEHAAICLLAHLQESEIGGSVRDTLREFLQKDHVAQNVMNLAKAGKT 1054

Query: 121  RQFWVEDNLLFTKGNRLYVPQSGELRRLLLKECHDTPWAGHNDWQRTYALL--------- 180
            RQFWVE++LL TKGNRLYVP++G+LR+ LL ECHDT WAGH  WQRTYALL         
Sbjct: 1055 RQFWVEEDLLVTKGNRLYVPKAGDLRKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNM 1114

Query: 181  ----------------------KLAGLLEPLPVPSRPWESVSLDFITRLPKVGEFEAILV 234
                                  K+AGLL+PLPVP+RPWESVS+DFIT LPKVG+FEAILV
Sbjct: 1115 RDEVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITYLPKVGDFEAILV 1174

[Close]

BLAST of Clc01G12800 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 107.1 bits (266), Expect = 3.3e-22
Identity = 57/136 (41.91%), Postives = 78/136 (57.35%), Query Frame = 0


Query: 118  KLAGLLEPLPVPSRPWESVSLDFITRLPKV-GEFEAILVIVDRFSKYATFVSTPKLCSVE 177
            +L GLL+PLP+    W  +S+DF+T LP        ILV+VDRFSK A F++T K     
Sbjct: 1180 RLHGLLQPLPIAEGRWLDISMDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDAT 1239

Query: 178  MTAQLFFKHIVKLWGIPASIVSDRNARFTRTFWTELFQMLGSTLNISSSYHPQTDG---R 237
                L F++I    G P +I SDR+ R T   + EL + LG    +SS+ HPQTDG   R
Sbjct: 1240 QLIDLLFRYIFSYHGFPRTITSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSER 1299

Query: 238  VLPSVRHLLRLYVADN 250
             + ++  LLR YV+ N
Sbjct: 1300 TIQTLNRLLRAYVSTN 1315

[Close]

BLAST of Clc01G12800 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 105.5 bits (262), Expect = 9.7e-22
Identity = 56/136 (41.18%), Postives = 77/136 (56.62%), Query Frame = 0


Query: 118  KLAGLLEPLPVPSRPWESVSLDFITRLPKV-GEFEAILVIVDRFSKYATFVSTPKLCSVE 177
            +L GLL+PLP+    W  +S+DF+T LP        ILV+VDRFSK A F++T K     
Sbjct: 1154 RLHGLLQPLPIAEGRWLDISMDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDAT 1213

Query: 178  MTAQLFFKHIVKLWGIPASIVSDRNARFTRTFWTELFQMLGSTLNISSSYHPQTDG---R 237
                L F++I    G P +I SDR+ R T   + EL + LG    +SS+ HPQTDG   R
Sbjct: 1214 QLIDLLFRYIFSYHGFPRTITSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSER 1273

Query: 238  VLPSVRHLLRLYVADN 250
             + ++  LLR Y + N
Sbjct: 1274 TIQTLNRLLRAYASTN 1289

[Close]

BLAST of Clc01G12800 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 5.3e-20
Identity = 50/126 (39.68%), Postives = 71/126 (56.35%), Query Frame = 0


Query: 121  GLLEPLPVPSRPWESVSLDFITRLPKVGEFEAILVIVDRFSKYATFVSTPKLCSVEMTAQ 180
            G L+P+P   RPWES+S+DFIT LP+   + A+ V+VDRFSK A  V   K  + E TA+
Sbjct: 972  GPLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTAR 1031

Query: 181  LFFKHIVKLWGIPASIVSDRNARFTRTFWTELFQMLGSTLNISSSYHPQTDG---RVLPS 240
            +F + ++  +G P  I++D +  FT   W +        +  S  Y PQTDG   R   +
Sbjct: 1032 MFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQT 1091

Query: 241  VRHLLR 244
            V  LLR
Sbjct: 1092 VEKLLR 1097

[Close]

BLAST of Clc01G12800 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 5.3e-20
Identity = 50/126 (39.68%), Postives = 71/126 (56.35%), Query Frame = 0


Query: 121  GLLEPLPVPSRPWESVSLDFITRLPKVGEFEAILVIVDRFSKYATFVSTPKLCSVEMTAQ 180
            G L+P+P   RPWES+S+DFIT LP+   + A+ V+VDRFSK A  V   K  + E TA+
Sbjct: 972  GPLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTAR 1031

Query: 181  LFFKHIVKLWGIPASIVSDRNARFTRTFWTELFQMLGSTLNISSSYHPQTDG---RVLPS 240
            +F + ++  +G P  I++D +  FT   W +        +  S  Y PQTDG   R   +
Sbjct: 1032 MFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQT 1091

Query: 241  VRHLLR 244
            V  LLR
Sbjct: 1092 VEKLLR 1097

[Close]

BLAST of Clc01G12800 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 5.3e-20
Identity = 50/126 (39.68%), Postives = 71/126 (56.35%), Query Frame = 0


Query: 121  GLLEPLPVPSRPWESVSLDFITRLPKVGEFEAILVIVDRFSKYATFVSTPKLCSVEMTAQ 180
            G L+P+P   RPWES+S+DFIT LP+   + A+ V+VDRFSK A  V   K  + E TA+
Sbjct: 972  GPLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTAR 1031

Query: 181  LFFKHIVKLWGIPASIVSDRNARFTRTFWTELFQMLGSTLNISSSYHPQTDG---RVLPS 240
            +F + ++  +G P  I++D +  FT   W +        +  S  Y PQTDG   R   +
Sbjct: 1032 MFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQT 1091

Query: 241  VRHLLR 244
            V  LLR
Sbjct: 1092 VEKLLR 1097

[Close]

BLAST of Clc01G12800 vs. ExPASy TrEMBL
Match: A0A5A7U921 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold673G001590 PE=4 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 2.0e-94
Identity = 178/295 (60.34%), Postives = 203/295 (68.81%), Query Frame = 0


Query: 1   MLAIVHCLRAWRQYLLRFKFVVKTDNSSIYHFFTQPKLSFKQARWQECLVEFDFQFEHRP 60
           MLA VHCLRAWRQYLL   FVVKTDNS+  HFFTQPKL+ KQARWQE L EFDF+FEH+ 
Sbjct: 130 MLATVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKK 189

Query: 61  ------------------------------------------------------AREGKT 120
                                                                 A+ GKT
Sbjct: 190 QSSNQAADALSRKQEHAAICLLAHLQGSEIGGSVRDTLREFLQKDHAAQNVMNLAKAGKT 249

Query: 121 RQFWVEDNLLFTKGNRLYVPQSGELRRLLLKECHDTPWAGHNDWQRTYALL--------K 180
           RQFWVE++LL TKGNRLYVP++G+LR+ LL ECHDT WAGH  WQRTYALL        K
Sbjct: 250 RQFWVEEDLLVTKGNRLYVPRAGDLRKKLLYECHDTLWAGHPGWQRTYALLKKDKVEKVK 309

Query: 181 LAGLLEPLPVPSRPWESVSLDFITRLPKVGEFEAILVIVDRFSKYATFVSTPKLCSVEMT 234
           +AGLL+PLPVP+RPWESVS+DFIT LPKVG+FEAILVI+DRFSKYATF+   K CS E T
Sbjct: 310 VAGLLDPLPVPTRPWESVSMDFITHLPKVGDFEAILVIIDRFSKYATFIPATKQCSAETT 369

[Close]

BLAST of Clc01G12800 vs. ExPASy TrEMBL
Match: A0A5A7UFL8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G00950 PE=4 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 2.2e-93
Identity = 180/318 (56.60%), Postives = 206/318 (64.78%), Query Frame = 0


Query: 1   MLAIVHCLRAWRQYLLRFKFVVKTDNSSIYHFFTQPKLSFKQARWQECLVEFDFQFEHRP 60
           MLA+VHCLRAWRQYLL   FVVKTDNS+  HFFTQPKL+ KQARWQE LVEFDF+FEH+ 
Sbjct: 1   MLAVVHCLRAWRQYLLGSTFVVKTDNSATCHFFTQPKLTSKQARWQEFLVEFDFEFEHKK 60

Query: 61  ------------------------------------------------------AREGKT 120
                                                                  + GKT
Sbjct: 61  GSNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHAAQNVMNLVKAGKT 120

Query: 121 RQFWVEDNLLFTKGNRLYVPQSGELRRLLLKECHDTPWAGHNDWQRTYALL--------- 180
           RQFWVE++LL TKGNRLYVP++G+LR+ LL ECHDT WAGH  WQRTYALL         
Sbjct: 121 RQFWVEEDLLVTKGNRLYVPRAGDLRKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNM 180

Query: 181 ----------------------KLAGLLEPLPVPSRPWESVSLDFITRLPKVGEFEAILV 234
                                 K+AGLL+PLPVP+RPWESVS+DFIT LPKVG+FEAILV
Sbjct: 181 RDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDFEAILV 240

[Close]

BLAST of Clc01G12800 vs. ExPASy TrEMBL
Match: A0A5D3BQE4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G001890 PE=4 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 4.9e-93
Identity = 179/318 (56.29%), Postives = 205/318 (64.47%), Query Frame = 0


Query: 1    MLAIVHCLRAWRQYLLRFKFVVKTDNSSIYHFFTQPKLSFKQARWQECLVEFDFQFEHRP 60
            MLA+VHCLRAWRQYLL   FVVKTDNS+  HFFTQPKL+ KQARWQE L EFDF+FEH+ 
Sbjct: 984  MLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKK 1043

Query: 61   ------------------------------------------------------AREGKT 120
                                                                   + GKT
Sbjct: 1044 GSNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHAAQNVMNLVKAGKT 1103

Query: 121  RQFWVEDNLLFTKGNRLYVPQSGELRRLLLKECHDTPWAGHNDWQRTYALL--------- 180
            RQFWVE++LL TKGNRLYVP++G+LR+ LL ECHDT WAGH  WQRTYALL         
Sbjct: 1104 RQFWVEEDLLVTKGNRLYVPRAGDLRKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNM 1163

Query: 181  ----------------------KLAGLLEPLPVPSRPWESVSLDFITRLPKVGEFEAILV 234
                                  K+AGLL+PLPVP+RPWESVS+DFIT LPKVG+FEAILV
Sbjct: 1164 RDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDFEAILV 1223

[Close]

BLAST of Clc01G12800 vs. ExPASy TrEMBL
Match: A0A5A7UY33 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G00110 PE=4 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 2.4e-92
Identity = 178/319 (55.80%), Postives = 203/319 (63.64%), Query Frame = 0


Query: 1    MLAIVHCLRAWRQYLLRFKFVVKTDNSSIYHFFTQPKLSFKQARWQECLVEFDFQFEHRP 60
            MLA+VHCLRAWRQYLL   FVVKTDNS+  HFFTQPKL+ KQARWQE L EFDF+FEH+ 
Sbjct: 800  MLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKK 859

Query: 61   ------------------------------------------------------AREGKT 120
                                                                  A+ GKT
Sbjct: 860  GSSNQAADALSRKQEHAAICLLAHLQESEIGGSVRDTLREFLQKDHAAQNVMNLAKAGKT 919

Query: 121  RQFWVEDNLLFTKGNRLYVPQSGELRRLLLKECHDTPWAGHNDWQRTYALL--------- 180
            RQFWVED+L  TKGNRLYVP++G LR+ LL ECHDT WAGH  WQRTYALL         
Sbjct: 920  RQFWVEDDLFVTKGNRLYVPRAGNLRKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNM 979

Query: 181  ----------------------KLAGLLEPLPVPSRPWESVSLDFITRLPKVGEFEAILV 235
                                  K+AGLL+PLPVP+RPWESVS+DFIT LPKVG+FEAILV
Sbjct: 980  RDDVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITHLPKVGDFEAILV 1039

[Close]

BLAST of Clc01G12800 vs. ExPASy TrEMBL
Match: A0A5A7T9P9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold744G00860 PE=4 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 2.4e-92
Identity = 179/318 (56.29%), Postives = 205/318 (64.47%), Query Frame = 0


Query: 1    MLAIVHCLRAWRQYLLRFKFVVKTDNSSIYHFFTQPKLSFKQARWQECLVEFDFQFEHRP 60
            MLA+VHCLRAWRQYLL   FVVKTDNS+  HFFTQPKL+ KQARWQE L EFDF+FEH+ 
Sbjct: 935  MLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKK 994

Query: 61   ------------------------------------------------------AREGKT 120
                                                                  A+ GKT
Sbjct: 995  GSSNQAADALSRKQEHAAICLLAHLQESEIGGSVRDTLREFLQKDHVAQNVMNLAKAGKT 1054

Query: 121  RQFWVEDNLLFTKGNRLYVPQSGELRRLLLKECHDTPWAGHNDWQRTYALL--------- 180
            RQFWVE++LL TKGNRLYVP++G+LR+ LL ECHDT WAGH  WQRTYALL         
Sbjct: 1055 RQFWVEEDLLVTKGNRLYVPKAGDLRKKLLYECHDTLWAGHPGWQRTYALLKKGYFWPNM 1114

Query: 181  ----------------------KLAGLLEPLPVPSRPWESVSLDFITRLPKVGEFEAILV 234
                                  K+AGLL+PLPVP+RPWESVS+DFIT LPKVG+FEAILV
Sbjct: 1115 RDEVMQYTKTCLICQQDKVEKVKVAGLLDPLPVPTRPWESVSMDFITYLPKVGDFEAILV 1174

The following BLAST results are available for this feature:

BLAST of Clc01G12800 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050676.1	4.1e-94	60.34	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0052269.1	4.5e-93	56.60	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK01597.1	1.0e-92	56.29	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0059106.1	5.0e-92	55.80	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0039608.1	5.0e-92	56.29	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of Clc01G12800 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7LHG5	3.3e-22	41.91	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q99315	9.7e-22	41.18	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q9UR07	5.3e-20	39.68	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	5.3e-20	39.68	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	5.3e-20	39.68	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Clc01G12800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U921	2.0e-94	60.34	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67...	[more]
A0A5A7UFL8	2.2e-93	56.60	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20...	[more]
A0A5D3BQE4	4.9e-93	56.29	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45...	[more]
A0A5A7UY33	2.4e-92	55.80	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43...	[more]
A0A5A7T9P9	2.4e-92	56.29	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74...	[more]

BLAST of Clc01G12800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR041373	Reverse transcriptase, RNase H-like domain	PFAM	PF17917	RT_RNaseH	coord: 1..52 e-value: 1.8E-9 score: 37.8
None	No IPR available	GENE3D	1.10.340.70		coord: 55..120 e-value: 2.0E-6 score: 30.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 257..279
None	No IPR available	PANTHER	PTHR45835	YALI0A06105P	coord: 123..251
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 123..277 e-value: 1.8E-24 score: 88.1
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 128..279 score: 15.212172
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 125..247
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc01G12800.1	Clc01G12800.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034645	cellular macromolecule biosynthetic process
biological_process	GO:0044271	cellular nitrogen compound biosynthetic process
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding