Clc01G07410 (gene) Watermelon (cordophanus) v2

Overview
NameClc01G07410
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Descriptionaluminum-activated malate transporter 8-like
LocationClcChr01: 7605867 .. 7606214 (-)
RNA-Seq ExpressionClc01G07410
SyntenyClc01G07410
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGACAATGACTGATCCGTCACCCTCATCCCAATTTCATCTAAAAGCTGCCAAATCCGCCATTGATGATTTAAAAGAATCCTTCTTCAAATATGTTGCCACTTCCTCAGTGGCTTCCATATTGTATATAATCGTTAAATCAATGGAAGGATTGTCTGAGGCAGTGGCTGAACTCTCTCTAAAAGCTCATTTCAAGAGTGTTGAACCCAATGTTTCAGTTTCACCAAACAAGCCTCTGTTGCTTCACAATGGAATTGTAAATCCATTGTTTCAAGCTGAAGATGAACAACCCCATGTTGTTATTATAGTGATAGCAACAAAGATTGAGAATTTACCTGAAAAATAA

mRNA sequence

ATGAAGACAATGACTGATCCGTCACCCTCATCCCAATTTCATCTAAAAGCTGCCAAATCCGCCATTGATGATTTAAAAGAATCCTTCTTCAAATATGTTGCCACTTCCTCAGTGGCTTCCATATTGTATATAATCGTTAAATCAATGGAAGGATTGTCTGAGGCAGTGGCTGAACTCTCTCTAAAAGCTCATTTCAAGAGTGTTGAACCCAATGTTTCAGTTTCACCAAACAAGCCTCTGTTGCTTCACAATGGAATTGTAAATCCATTGTTTCAAGCTGAAGATGAACAACCCCATGTTGTTATTATAGTGATAGCAACAAAGATTGAGAATTTACCTGAAAAATAA

Coding sequence (CDS)

ATGAAGACAATGACTGATCCGTCACCCTCATCCCAATTTCATCTAAAAGCTGCCAAATCCGCCATTGATGATTTAAAAGAATCCTTCTTCAAATATGTTGCCACTTCCTCAGTGGCTTCCATATTGTATATAATCGTTAAATCAATGGAAGGATTGTCTGAGGCAGTGGCTGAACTCTCTCTAAAAGCTCATTTCAAGAGTGTTGAACCCAATGTTTCAGTTTCACCAAACAAGCCTCTGTTGCTTCACAATGGAATTGTAAATCCATTGTTTCAAGCTGAAGATGAACAACCCCATGTTGTTATTATAGTGATAGCAACAAAGATTGAGAATTTACCTGAAAAATAA

Protein sequence

MKTMTDPSPSSQFHLKAAKSAIDDLKESFFKYVATSSVASILYIIVKSMEGLSEAVAELSLKAHFKSVEPNVSVSPNKPLLLHNGIVNPLFQAEDEQPHVVIIVIATKIENLPEK
Homology
[Close]
BLAST of Clc01G07410 vs. NCBI nr
Match: XP_022982940.1 (aluminum-activated malate transporter 8-like [Cucurbita maxima])

HSP 1 Score: 124.8 bits (312), Expect = 4.9e-25
Identity = 74/125 (59.20%), Postives = 88/125 (70.40%), Query Frame = 0 

Query: 1   MKTMTDPSPSSQFHLKAAKSAIDDLKES----------FFKYVATSSVASILYIIVKSME 60
           MK MT+PSPSSQ HL AAKSA++DLK+S              +  ++VASIL  IVKS+E
Sbjct: 334 MKAMTNPSPSSQVHLNAAKSAMNDLKDSLKLTTAQTTNLLAIIPDATVASILIEIVKSVE 393

Query: 61  GLSEAVAELSLKAHFKSVEPNVSVSPNKPLLLHNGIVNPLFQAEDEQPHVVIIVIATKIE 116
            LSEAV ELSLKAHFKS+E   +VSP KP LLH G +NP  +AEDEQPHVVI V  T+ E
Sbjct: 394 DLSEAVVELSLKAHFKSIE--ATVSPEKPQLLHKGTINPFVEAEDEQPHVVIRVRGTEDE 453

[Close]
BLAST of Clc01G07410 vs. NCBI nr
Match: XP_023526244.1 (aluminum-activated malate transporter 8-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 122.1 bits (305), Expect = 3.2e-24
Identity = 72/125 (57.60%), Postives = 88/125 (70.40%), Query Frame = 0 

Query: 1   MKTMTDPSPSSQFHLKAAKSAIDDLKE----------SFFKYVATSSVASILYIIVKSME 60
           MK MT+PSPSSQ HL AAKSA++DLK+          +  + +  ++VASIL  IVKS+E
Sbjct: 334 MKAMTNPSPSSQVHLNAAKSAMNDLKDTLKLGTAQTTNLLEIIPDATVASILIEIVKSVE 393

Query: 61  GLSEAVAELSLKAHFKSVEPNVSVSPNKPLLLHNGIVNPLFQAEDEQPHVVIIVIATKIE 116
            LSEAV ELSLKAHFKS+E   +VSP KP LLH G +NP  +AEDEQPHVVI V  T+  
Sbjct: 394 DLSEAVVELSLKAHFKSIE--ATVSPEKPQLLHKGTINPFVEAEDEQPHVVISVRGTEDG 453

[Close]
BLAST of Clc01G07410 vs. NCBI nr
Match: KAG7017502.1 (Aluminum-activated malate transporter 8, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 120.2 bits (300), Expect = 1.2e-23
Identity = 72/125 (57.60%), Postives = 87/125 (69.60%), Query Frame = 0 

Query: 1   MKTMTDPSPSSQFHLKAAKSAIDDLKES----------FFKYVATSSVASILYIIVKSME 60
           MK MT+PS SSQ HL AAKSA++DLK+S            + +  ++VASIL  IVKS+E
Sbjct: 354 MKAMTNPSSSSQVHLNAAKSAMNDLKDSLKLGTAQTTNLLEVIPDATVASILIEIVKSVE 413

Query: 61  GLSEAVAELSLKAHFKSVEPNVSVSPNKPLLLHNGIVNPLFQAEDEQPHVVIIVIATKIE 116
            LSEAV ELSLKAHFKS+E   +VSP KP LLH G +NP  +AEDEQPHVVI V  T+  
Sbjct: 414 DLSEAVVELSLKAHFKSIE--ATVSPEKPQLLHKGTINPFVEAEDEQPHVVISVRGTEDG 473

[Close]
BLAST of Clc01G07410 vs. NCBI nr
Match: KAG6580748.1 (Aluminum-activated malate transporter 8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 120.2 bits (300), Expect = 1.2e-23
Identity = 72/125 (57.60%), Postives = 87/125 (69.60%), Query Frame = 0 

Query: 1   MKTMTDPSPSSQFHLKAAKSAIDDLKES----------FFKYVATSSVASILYIIVKSME 60
           MK MT+PS SSQ HL AAKSA++DLK+S            + +  ++VASIL  IVKS+E
Sbjct: 334 MKAMTNPSSSSQVHLNAAKSAMNDLKDSLKLGTAQTTNLLEIIPDATVASILIEIVKSVE 393

Query: 61  GLSEAVAELSLKAHFKSVEPNVSVSPNKPLLLHNGIVNPLFQAEDEQPHVVIIVIATKIE 116
            LSEAV ELSLKAHFKS+E   +VSP KP LLH G +NP  +AEDEQPHVVI V  T+  
Sbjct: 394 DLSEAVVELSLKAHFKSIE--ATVSPEKPQLLHKGTINPFVEAEDEQPHVVISVRGTEDG 453

[Close]
BLAST of Clc01G07410 vs. NCBI nr
Match: XP_022935343.1 (aluminum-activated malate transporter 8-like [Cucurbita moschata])

HSP 1 Score: 115.5 bits (288), Expect = 2.9e-22
Identity = 72/125 (57.60%), Postives = 87/125 (69.60%), Query Frame = 0 

Query: 1   MKTMTDPSPSSQFHLKAAKSAIDDLKES----------FFKYVATSSVASILYIIVKSME 60
           MK MT+PS SSQ HL AAKSA++DLK+S            + +  ++VASIL  IVKS+E
Sbjct: 334 MKAMTNPSSSSQVHLNAAKSAMNDLKDSLKLGTAQTTNLLEIIPDATVASILIEIVKSVE 393

Query: 61  GLSEAVAELSLKAHFKSVEPNVSVSPNKPLLLHNGIVNPLFQAEDEQPHVVIIVIATKIE 116
            LSEAV ELSLKAHFKS+E   +VSP KP LLH G +NPL +AEDEQPH VI V  T+  
Sbjct: 394 DLSEAVVELSLKAHFKSIE--ATVSPEKPQLLHKGTINPLVEAEDEQPH-VISVRGTEDG 453

[Close]
BLAST of Clc01G07410 vs. ExPASy TrEMBL
Match: A0A6J1J497 (aluminum-activated malate transporter 8-like OS=Cucurbita maxima OX=3661 GN=LOC111481634 PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 2.4e-25
Identity = 74/125 (59.20%), Postives = 88/125 (70.40%), Query Frame = 0 

Query: 1   MKTMTDPSPSSQFHLKAAKSAIDDLKES----------FFKYVATSSVASILYIIVKSME 60
           MK MT+PSPSSQ HL AAKSA++DLK+S              +  ++VASIL  IVKS+E
Sbjct: 334 MKAMTNPSPSSQVHLNAAKSAMNDLKDSLKLTTAQTTNLLAIIPDATVASILIEIVKSVE 393

Query: 61  GLSEAVAELSLKAHFKSVEPNVSVSPNKPLLLHNGIVNPLFQAEDEQPHVVIIVIATKIE 116
            LSEAV ELSLKAHFKS+E   +VSP KP LLH G +NP  +AEDEQPHVVI V  T+ E
Sbjct: 394 DLSEAVVELSLKAHFKSIE--ATVSPEKPQLLHKGTINPFVEAEDEQPHVVIRVRGTEDE 453

[Close]
BLAST of Clc01G07410 vs. ExPASy TrEMBL
Match: A0A6J1FAA4 (aluminum-activated malate transporter 8-like OS=Cucurbita moschata OX=3662 GN=LOC111442257 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.4e-22
Identity = 72/125 (57.60%), Postives = 87/125 (69.60%), Query Frame = 0 

Query: 1   MKTMTDPSPSSQFHLKAAKSAIDDLKES----------FFKYVATSSVASILYIIVKSME 60
           MK MT+PS SSQ HL AAKSA++DLK+S            + +  ++VASIL  IVKS+E
Sbjct: 334 MKAMTNPSSSSQVHLNAAKSAMNDLKDSLKLGTAQTTNLLEIIPDATVASILIEIVKSVE 393

Query: 61  GLSEAVAELSLKAHFKSVEPNVSVSPNKPLLLHNGIVNPLFQAEDEQPHVVIIVIATKIE 116
            LSEAV ELSLKAHFKS+E   +VSP KP LLH G +NPL +AEDEQPH VI V  T+  
Sbjct: 394 DLSEAVVELSLKAHFKSIE--ATVSPEKPQLLHKGTINPLVEAEDEQPH-VISVRGTEDG 453

[Close]
BLAST of Clc01G07410 vs. ExPASy TrEMBL
Match: A0A6J1L2Z6 (aluminum-activated malate transporter 8-like OS=Cucurbita maxima OX=3661 GN=LOC111498638 PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.6e-18
Identity = 67/131 (51.15%), Postives = 82/131 (62.60%), Query Frame = 0 

Query: 1   MKTMTDPSPSSQFHLKAAKSAIDDLK--------------ESFFKYVATSSVASILYIIV 60
           MKTM+DPSP+SQ HL AAKSAI+DLK               +    +  ++VASIL  IV
Sbjct: 330 MKTMSDPSPTSQVHLNAAKSAINDLKNCLKSATTQTPDECSNLLAIIPDATVASILIEIV 389

Query: 61  KSMEGLSEAVAELSLKAHFKSVEPNVSVSPNKPLLLHNGIVNPLFQAED--EQPHVVIIV 116
           KS+E L EAV ELS+KAHFKSVE +V+V   KP LLH G + P  +AED  E  HVVI V
Sbjct: 390 KSVEDLCEAVGELSVKAHFKSVEGSVAV--EKPQLLHRGAIKPFVEAEDEGENGHVVITV 449

[Close]
BLAST of Clc01G07410 vs. ExPASy TrEMBL
Match: A0A5D3DNX6 (Aluminum-activated malate transporter 8-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004590 PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 3.6e-18
Identity = 68/129 (52.71%), Postives = 80/129 (62.02%), Query Frame = 0 

Query: 1   MKTMTDPSPSSQFHLKAAKSAIDDLK--------------ESFFKYVATSSVASILYIIV 60
           MKTMTDPSPSSQ HL AAKSA++DLK               +    +  ++VASIL  IV
Sbjct: 330 MKTMTDPSPSSQLHLNAAKSAVNDLKNTLKSGTAQISDDISNLLAIIPDATVASILIDIV 389

Query: 61  KSMEGLSEAVAELSLKAHFKSVEPNVSVSPNKPLLLHNGIVNPLFQAED----EQPHVVI 112
           KS+E LSEAVAELSLKA FK      SVSP KP LLH G + P  + +D    +QPHVVI
Sbjct: 390 KSVEDLSEAVAELSLKAKFK------SVSPEKPQLLHKGTIKPFVEEDDNEAQQQPHVVI 449

[Close]
BLAST of Clc01G07410 vs. ExPASy TrEMBL
Match: A0A1S3B7M1 (aluminum-activated malate transporter 8-like OS=Cucumis melo OX=3656 GN=LOC103486680 PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 3.6e-18
Identity = 68/129 (52.71%), Postives = 80/129 (62.02%), Query Frame = 0 

Query: 1   MKTMTDPSPSSQFHLKAAKSAIDDLK--------------ESFFKYVATSSVASILYIIV 60
           MKTMTDPSPSSQ HL AAKSA++DLK               +    +  ++VASIL  IV
Sbjct: 330 MKTMTDPSPSSQLHLNAAKSAVNDLKNTLKSGTAQISDDISNLLAIIPDATVASILIDIV 389

Query: 61  KSMEGLSEAVAELSLKAHFKSVEPNVSVSPNKPLLLHNGIVNPLFQAED----EQPHVVI 112
           KS+E LSEAVAELSLKA FK      SVSP KP LLH G + P  + +D    +QPHVVI
Sbjct: 390 KSVEDLSEAVAELSLKAKFK------SVSPEKPQLLHKGTIKPFVEEDDNEAQQQPHVVI 449

[Close]
BLAST of Clc01G07410 vs. TAIR 10
Match: AT3G11680.1 (Aluminium activated malate transporter family protein )

HSP 1 Score: 44.3 bits (103), Expect = 7.8e-05
Identity = 37/121 (30.58%), Postives = 60/121 (49.59%), Query Frame = 0 

Query: 1   MKTMTDPSPSSQFHLKAAKSAIDDLK-----------ESFFKYVATSSVASILYIIVKSM 60
           +KTM + S     H+  +K AI +LK           +   + +   ++ASIL  +V  +
Sbjct: 343 IKTMRNDSACVNAHIDNSKKAIKNLKIALKSSYPETYKDLLEIIPGVTMASILIEVVNCV 402

Query: 61  EGLSEAVAELSLKAHFK-SVEPNVSVSPNKPLLLHNGIVNPLFQAEDEQP-----HVVII 105
           E + EAV E S  AHFK +++  +S    +  LLH G V P+   ++E+      HV+I 
Sbjct: 403 EKIYEAVEEFSGLAHFKETLDSKLSAEIGQHQLLHRGCVKPVLDGDNEKEDNSSCHVLIT 462

The following BLAST results are available for this feature:
BLAST of Clc01G07410 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022982940.14.9e-2559.20aluminum-activated malate transporter 8-like [Cucurbita maxima][more]
XP_023526244.13.2e-2457.60aluminum-activated malate transporter 8-like [Cucurbita pepo subsp. pepo][more]
KAG7017502.11.2e-2357.60Aluminum-activated malate transporter 8, partial [Cucurbita argyrosperma subsp. ... [more]
KAG6580748.11.2e-2357.60Aluminum-activated malate transporter 8, partial [Cucurbita argyrosperma subsp. ... [more]
XP_022935343.12.9e-2257.60aluminum-activated malate transporter 8-like [Cucurbita moschata][more]
BLAST of Clc01G07410 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc01G07410 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1J4972.4e-2559.20aluminum-activated malate transporter 8-like OS=Cucurbita maxima OX=3661 GN=LOC1... [more]
A0A6J1FAA41.4e-2257.60aluminum-activated malate transporter 8-like OS=Cucurbita moschata OX=3662 GN=LO... [more]
A0A6J1L2Z61.6e-1851.15aluminum-activated malate transporter 8-like OS=Cucurbita maxima OX=3661 GN=LOC1... [more]
A0A5D3DNX63.6e-1852.71Aluminum-activated malate transporter 8-like OS=Cucumis melo var. makuwa OX=1194... [more]
A0A1S3B7M13.6e-1852.71aluminum-activated malate transporter 8-like OS=Cucumis melo OX=3656 GN=LOC10348... [more]
BLAST of Clc01G07410 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G11680.17.8e-0530.58Aluminium activated malate transporter family protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc01G07410.1Clc01G07410.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
cellular_component GO:0016020 membrane