Cla97C11G214327 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C11G214327
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	DNA-directed RNA polymerase subunit beta'
Location	Cla97Chr11: 7727477 .. 7730264 (-)
RNA-Seq Expression	Cla97C11G214327
Synteny	Cla97C11G214327

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTCAGGAGAAATTGGTACAAGAAGCCGTGGATACACTTCTTGATAATGGAATCCGCGGACAACCAATGAGGGATGGCCATAATAAGGTTTACAAGTCGTTTTCCGATGTAATTGAAGGCAAAGAGGGAAGATTTCGGGAGACTCTGCTTGGCAAACGGGTCGATTATTCAGGACGTTCTGTGATTGTTGTAGGTCCCTCACTTTCATTACATCGATGTGGATTGCCTCGCGAAATCGCAATAGAGCTTTTCCAGACATTTTTAATTCGTGGTCTAATTCGACAACATTTTGCTTCGAACATAGGAGTTGCTAAGAGTAAAATTCGGGAAAAAGAACCCATTGTATGGGAAATACTTCAGGAAGTTATGCAGGGGCATCCCGTATTGCTAAATAGAGCGCCTACTCTGCATAGATTAGGCATCCAGGCCTTCCAACCTATTTTAGTGGAAGGACGTGCTATTTGTTTACATCCATTAGTTTGTAAGGGATTCAATGCCGACTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCTTTGGAGGCTCAAGCAGAGGCGCGTTTACTTATGTTTTCTCATATGAATCTCTTGTCTTCAGCTATTGGGGATCCCATTTCTGTACCAACTCAAGATATGCTTATTGGACTCTATGTATTAACGAGCGGGAATCGCCGAGGTATTTGTGCAAATCGGTATAATCCATCTAATCGCAAAAATCATAAAAATGAAAAAATTTACAATAATAACTATAAATATACGAAAGAACCCTTTTTTTGTAATTCCTATGATGCAATTGGAGCTTATCGCCAGAAAAGGATCAATTTAGATAGTCCTTTGTGGCTCCGATGGCGACTAGATCAACGCGTTATTGCTTCAAGAGAAGCCCCTATCGAAGTTCACTATGAATCTTTGGGTACCCATCATGAGATTTATGGGTCCTATCTAATAGTCAAAAGTATAAAAAAAGAAATTCTTTGTATATACATTCGAAGCACTGTTGGTCATATTTCTCTTTATCGAGAAATCGAAGAGGCTATACAAGGATTTTGCCGGGCCTGCTCATATGGTACCTAATCTTCTGGTATCTCACTCAGCTAAGTAATTATATGACACCGGTATGAATTTTGTTCTCTCCGGTTCAACTAGGACCATAGGTCCTGAATTTCTACGCGAATCAAGATCGAGAAAAGGAAGTTTTCTAATCATTGACTCAAACCTATTGTCGAACCTCAATAGCATAGCTCTTTCCCAGGTCTCCTTTCGAAGGAGAAAGGCCTTCGCATTCCTAATCCGGTGGGGGGCCGGACGGCTTTGTTTGCCCCAGCTTGGCGAATCGCATCCCCGCGCAACGACATTGTTTGTGCGCCCCTTACCGTTCTCGGGGACCCGATGAAAAAAATGGGATCACTTCTTATGGACTCGTTGAGAATGATTCTGATCTAGTTCATGGCCTATTAGAAGTAGAAGGCGCTCTGTTGGGATCCTCACGGACAGAAAAAGATTGCAGTCGATTTGATAATGATCGAGTGACGTGCCATAATGATTCAATTCCTAGTAGTAGCAATGATACAAGTCGGATCCTAGATGTAGAAATATAAGAAGGAAGATCCCCTTCTCCATCGAAAGAAATGATATTTTCGCGGATACAACACATACAAAATTAACCAAATTTGTTATTATATGTTTGCTCTAGTTTTGTTGTTTTTGATGTTGAAACAGTTTTTCTTTATCCATGGGCAATGAGTTTTGATGTATTAGGGGTATCCGTCTTTATAGAAGCTTTAATTTTCGTGCTTATCCTAATTGTCGCGAACTCGGACTCTTTTTACGTCCCCCCCGGAAGAGTTTACTGCTAGAAATCGAAGTGATTGAAAGATATGAGATCCTTCTATCTATTCTATAAGCAAAATAGAAAGTGGTCCTGACCAAATAGTCGAATCTATCTCTCAGCGATTGATTCTTTTCTCCACTAATAACCCCTTCCCAACCAGCCCGCCCGATCGATTTTGTAAGATCGGCTAATTCAAAGGGGTTAATCTGGTCCGAAGTTGTCGGAACGTGCCTAGAAAAGGTCAGCGGGGCAATCAAAAAATACCTGCTTTTGACGCTACGCTGTGCCGACCCGAGATGCTACTCACGAGCTGGTCAGGGACAGGAGTCGCACACTTACTTGAGCTGTGCGGGAGACTGGAGAATGGGTCGAGTAAACTCCCCCGGGGCCGGCCGGCAAAATCACAGACGAAGCTTTATGGTATTTCTTTTTTTATTATTGGAAAAGGAGGGAGGGCGCCTGGGTATGTTCTCGAAAGGGGCGGTCAAAAAAAATGAATTGTTGTTTTAAGTAATCCTCAAAACAACAATTCAGTTCAATTCGAATCGACTAATCCGGTATATTTTCCACATTGATAGGAGTACGTTTATGTTTCTGCTTTACGAATATGATATTTTCTGGGTTTTTCTGATAATATCAAGTGTTATTCCTATTTTGGCATTTCTAATTTCTGGAGTTTTAGCCCCTCTTAGCAAAGAGCCAGAGAAACTTTCGAGTTATGAATCGGGAATAGAACCAATGGGCGATGCTTGGGTACAATTTAGAATCCGTTATTATATGTTTGCTCTAGTTTTTGTTGTTTTTGATGTTGAAACGGTTTTTCTTTATCCATGGGCAATGAGTTTTGATGTATTAGGGGTATCCGTCTTTATAGAAGCTTTAATTTTCGTGCTTATCCTAATTGTCGGGTTAGTTTATGCATGGCGAAAAGGAGCATTGGAATGGTCTTAG

mRNA sequence

ATGTGTCAGGAGAAATTGGTACAAGAAGCCGTGGATACACTTCTTGATAATGGAATCCGCGGACAACCAATGAGGGATGGCCATAATAAGGTTTACAAGTCGTTTTCCGATGTAATTGAAGGCAAAGAGGGAAGATTTCGGGAGACTCTGCTTGGCAAACGGGTCGATTATTCAGGACGTTCTGTGATTGTTGTAGGTCCCTCACTTTCATTACATCGATGTGGATTGCCTCGCGAAATCGCAATAGAGCTTTTCCAGACATTTTTAATTCGTGGTCTAATTCGACAACATTTTGCTTCGAACATAGGAGTTGCTAAGAGTAAAATTCGGGAAAAAGAACCCATTGTATGGGAAATACTTCAGGAAGTTATGCAGGGGCATCCCGTATTGCTAAATAGAGCGCCTACTCTGCATAGATTAGGCATCCAGGCCTTCCAACCTATTTTAGTGGAAGGACGTGCTATTTGTTTACATCCATTAGTTTGTAAGGGATTCAATGCCGACTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCTTTGGAGGCTCAAGCAGAGGCGCGTTTACTTATGTTTTCTCATATGAATCTCTTGTCTTCAGCTATTGGGGATCCCATTTCTGTACCAACTCAAGATATGCTTATTGGACTCTATGTATTAACGAGCGGGAATCGCCGAGGTATTTGTGCAAATCGCTTGGCGAATCGCATCCCCGCGCAACGACATTGTTTGTGCGCCCCTTACCGTTCTCGGGGACCCGATGAAAAAAATGGGATCACTTCTTATGGACTCGTTGAGAATGATTCTGATCTAGTTCATGGCCTATTAGAAGTAGAAGGCGCTCTGTTGGGATCCTCACGGACAGAAAAAGATTGCAGTCGATTTGATAATGATCGAGTGACGTGCCATAATGATTCAATTCCTAGTAGTAGCAATGATACAAGGGTTAATCTGGTCCGAAGTTGTCGGAACGTGCCTAGAAAAGGTCAGCGGGGCAATCAAAAAATACCTGCTTTTGACGCTACGCTGTGCCGACCCGAGATGCTACTCACGAGCTGGTCAGGGACAGGAGTCGCACACTTACTTGAGCTGTGCGGGAGACTGGAGAATGGGTCGAGTAAACTCCCCCGGGGCCGGCCGGCAAAATCACAGACGAAGCTTTATGGTATTTCTTTTTTTATTATTGGAAAAGGAGGGAGGGCGCCTGGGAGTACGTTTATGTTTCTGCTTTACGAATATGATATTTTCTGGGTTTTTCTGATAATATCAAGTGTTATTCCTATTTTGGCATTTCTAATTTCTGGAGTTTTAGCCCCTCTTAGCAAAGAGCCAGAGAAACTTTCGAGTTATGAATCGGGAATAGAACCAATGGGCGATGCTTGGGTACAATTTAGAATCCGTTATTATATGTTTGCTCTAGTTTTTGTTGTTTTTGATGTTGAAACGGTTTTTCTTTATCCATGGGCAATGAGTTTTGATGTATTAGGGGTATCCGTCTTTATAGAAGCTTTAATTTTCGTGCTTATCCTAATTGTCGGGTTAGTTTATGCATGGCGAAAAGGAGCATTGGAATGGTCTTAG

Coding sequence (CDS)

ATGTGTCAGGAGAAATTGGTACAAGAAGCCGTGGATACACTTCTTGATAATGGAATCCGCGGACAACCAATGAGGGATGGCCATAATAAGGTTTACAAGTCGTTTTCCGATGTAATTGAAGGCAAAGAGGGAAGATTTCGGGAGACTCTGCTTGGCAAACGGGTCGATTATTCAGGACGTTCTGTGATTGTTGTAGGTCCCTCACTTTCATTACATCGATGTGGATTGCCTCGCGAAATCGCAATAGAGCTTTTCCAGACATTTTTAATTCGTGGTCTAATTCGACAACATTTTGCTTCGAACATAGGAGTTGCTAAGAGTAAAATTCGGGAAAAAGAACCCATTGTATGGGAAATACTTCAGGAAGTTATGCAGGGGCATCCCGTATTGCTAAATAGAGCGCCTACTCTGCATAGATTAGGCATCCAGGCCTTCCAACCTATTTTAGTGGAAGGACGTGCTATTTGTTTACATCCATTAGTTTGTAAGGGATTCAATGCCGACTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCTTTGGAGGCTCAAGCAGAGGCGCGTTTACTTATGTTTTCTCATATGAATCTCTTGTCTTCAGCTATTGGGGATCCCATTTCTGTACCAACTCAAGATATGCTTATTGGACTCTATGTATTAACGAGCGGGAATCGCCGAGGTATTTGTGCAAATCGCTTGGCGAATCGCATCCCCGCGCAACGACATTGTTTGTGCGCCCCTTACCGTTCTCGGGGACCCGATGAAAAAAATGGGATCACTTCTTATGGACTCGTTGAGAATGATTCTGATCTAGTTCATGGCCTATTAGAAGTAGAAGGCGCTCTGTTGGGATCCTCACGGACAGAAAAAGATTGCAGTCGATTTGATAATGATCGAGTGACGTGCCATAATGATTCAATTCCTAGTAGTAGCAATGATACAAGGGTTAATCTGGTCCGAAGTTGTCGGAACGTGCCTAGAAAAGGTCAGCGGGGCAATCAAAAAATACCTGCTTTTGACGCTACGCTGTGCCGACCCGAGATGCTACTCACGAGCTGGTCAGGGACAGGAGTCGCACACTTACTTGAGCTGTGCGGGAGACTGGAGAATGGGTCGAGTAAACTCCCCCGGGGCCGGCCGGCAAAATCACAGACGAAGCTTTATGGTATTTCTTTTTTTATTATTGGAAAAGGAGGGAGGGCGCCTGGGAGTACGTTTATGTTTCTGCTTTACGAATATGATATTTTCTGGGTTTTTCTGATAATATCAAGTGTTATTCCTATTTTGGCATTTCTAATTTCTGGAGTTTTAGCCCCTCTTAGCAAAGAGCCAGAGAAACTTTCGAGTTATGAATCGGGAATAGAACCAATGGGCGATGCTTGGGTACAATTTAGAATCCGTTATTATATGTTTGCTCTAGTTTTTGTTGTTTTTGATGTTGAAACGGTTTTTCTTTATCCATGGGCAATGAGTTTTGATGTATTAGGGGTATCCGTCTTTATAGAAGCTTTAATTTTCGTGCTTATCCTAATTGTCGGGTTAGTTTATGCATGGCGAAAAGGAGCATTGGAATGGTCTTAG

Protein sequence

MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRLANRIPAQRHCLCAPYRSRGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTCHNDSIPSSSNDTRVNLVRSCRNVPRKGQRGNQKIPAFDATLCRPEMLLTSWSGTGVAHLLELCGRLENGSSKLPRGRPAKSQTKLYGISFFIIGKGGRAPGSTFMFLLYEYDIFWVFLIISSVIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS

Homology

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BLAST of Cla97C11G214327 vs. NCBI nr
Match: AHM88912.1 (RNA polymerase beta [Lagenaria siceraria])

HSP 1 Score: 471.5 bits (1212), Expect = 9.7e-129
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0


Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 234
           SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR
Sbjct: 502 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 554

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BLAST of Cla97C11G214327 vs. NCBI nr
Match: ASY96794.1 (RNA polymerase beta' subunit [Cucumis melo var. momordica] >ASY96968.1 RNA polymerase beta' subunit [Cucumis melo var. cantalupo] >ASY97316.1 RNA polymerase beta' subunit [Cucumis melo var. flexuosus] >ASY97055.1 RNA polymerase beta' subunit [Cucumis melo var. cantalupo] >ASY97229.1 RNA polymerase beta' subunit [Cucumis melo var. cantalupo])

HSP 1 Score: 471.5 bits (1212), Expect = 9.7e-129
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0


Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 323 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 382

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL
Sbjct: 383 SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 442

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 443 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 502

Query: 181 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 234
           SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR
Sbjct: 503 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 555

[Close]

BLAST of Cla97C11G214327 vs. NCBI nr
Match: AHM88970.1 (RNA polymerase beta [Lagenaria siceraria])

HSP 1 Score: 471.5 bits (1212), Expect = 9.7e-129
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0


Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 234
           SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR
Sbjct: 502 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 554

[Close]

BLAST of Cla97C11G214327 vs. NCBI nr
Match: YP_009560826.1 (RpoC1 [Trichosanthes kirilowii] >YP_009752403.1 RNA polymerase beta' subunit [Trichosanthes tricuspidata] >YP_009753696.1 RNA polymerase beta' subunit [Trichosanthes nervifolia] >QAB33258.1 RpoC1 [Trichosanthes kirilowii] >QIT04799.1 RNA polymerase beta' subunit [Trichosanthes tricuspidata] >QIT05307.1 RNA polymerase beta' subunit [Trichosanthes nervifolia])

HSP 1 Score: 471.5 bits (1212), Expect = 9.7e-129
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0


Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 234
           SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR
Sbjct: 502 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 554

[Close]

BLAST of Cla97C11G214327 vs. NCBI nr
Match: AHM91152.1 (RNA polymerase beta, partial [Lagenaria siceraria])

HSP 1 Score: 471.5 bits (1212), Expect = 9.7e-129
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0


Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 234
           SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR
Sbjct: 502 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 554

[Close]

BLAST of Cla97C11G214327 vs. ExPASy Swiss-Prot
Match: Q4VZP2 (DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus OX=3659 GN=rpoC1 PE=3 SV=3)

HSP 1 Score: 471.5 bits (1212), Expect = 1.3e-131
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0


Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 234
           SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR
Sbjct: 502 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 554

[Close]

BLAST of Cla97C11G214327 vs. ExPASy Swiss-Prot
Match: A6MM27 (DNA-directed RNA polymerase subunit beta' OS=Buxus microphylla OX=153571 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 465.7 bits (1197), Expect = 7.0e-130
Identity = 230/233 (98.71%), Postives = 231/233 (99.14%), Query Frame = 0


Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQH ASNIGVAKSKIREKEPIVWEIL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHVASNIGVAKSKIREKEPIVWEIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 234
           SLEAQAEARLLMFSHMNLLS AIGDPISVPTQDMLIGLYVLTSGNRRGICANR
Sbjct: 502 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 554

[Close]

BLAST of Cla97C11G214327 vs. ExPASy Swiss-Prot
Match: Q8S8Y0 (DNA-directed RNA polymerase subunit beta' OS=Atropa belladonna OX=33113 GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 462.6 bits (1189), Expect = 5.9e-129
Identity = 227/233 (97.42%), Postives = 229/233 (98.28%), Query Frame = 0


Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQH ASNIGVAKSKIREKEPIVWEIL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQP+LVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 234
           SLEAQ EARLLMFSHMNLLS AIGDPISVPTQDMLIGLYVLTSGNRRGIC NR
Sbjct: 502 SLEAQVEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICVNR 554

[Close]

BLAST of Cla97C11G214327 vs. ExPASy Swiss-Prot
Match: P11705 (DNA-directed RNA polymerase subunit beta' OS=Spinacia oleracea OX=3562 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 462.2 bits (1188), Expect = 7.7e-129
Identity = 227/233 (97.42%), Postives = 230/233 (98.71%), Query Frame = 0


Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQH ASNIGVAK KIREKEPIVW+IL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPIVWKIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 234
           SLEAQAEARLLMFSHMNLLS AIGDPISVPTQDMLIGLY+LTSGNRRGICANR
Sbjct: 502 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGICANR 554

[Close]

BLAST of Cla97C11G214327 vs. ExPASy Swiss-Prot
Match: B1NWE1 (DNA-directed RNA polymerase subunit beta' OS=Manihot esculenta OX=3983 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 461.1 bits (1185), Expect = 1.7e-128
Identity = 227/233 (97.42%), Postives = 229/233 (98.28%), Query Frame = 0


Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRET+LGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETMLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQ F+IRGLIRQH ASNIGVAKSKIREKEPIVWEIL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
            EVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 HEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 234
           SLEAQAEARLLMFSHMNLLS AIGDPISVPTQDMLIGLYVLTSGNRRGICANR
Sbjct: 502 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 554

[Close]

BLAST of Cla97C11G214327 vs. ExPASy TrEMBL
Match: A0A218KG20 (DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus var. hardwickii OX=319220 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 471.5 bits (1212), Expect = 4.7e-129
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0


Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 234
           SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR
Sbjct: 502 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 554

[Close]

BLAST of Cla97C11G214327 vs. ExPASy TrEMBL
Match: A0A6M3S6B8 (DNA-directed RNA polymerase subunit beta' OS=Trichosanthes kirilowii OX=3677 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 471.5 bits (1212), Expect = 4.7e-129
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0


Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 323 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 382

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL
Sbjct: 383 SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 442

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 443 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 502

Query: 181 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 234
           SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR
Sbjct: 503 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 555

[Close]

BLAST of Cla97C11G214327 vs. ExPASy TrEMBL
Match: A0A1X9Q1T5 (DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus OX=3659 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 471.5 bits (1212), Expect = 4.7e-129
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0


Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 234
           SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR
Sbjct: 502 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 554

[Close]

BLAST of Cla97C11G214327 vs. ExPASy TrEMBL
Match: A0A249RZJ2 (DNA-directed RNA polymerase subunit beta' OS=Cucumis melo var. cantalupensis OX=3658 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 471.5 bits (1212), Expect = 4.7e-129
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0


Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 323 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 382

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL
Sbjct: 383 SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 442

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 443 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 502

Query: 181 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 234
           SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR
Sbjct: 503 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 555

[Close]

BLAST of Cla97C11G214327 vs. ExPASy TrEMBL
Match: A0A1P8LE65 (DNA-directed RNA polymerase subunit gamma OS=Citrullus mucosospermus OX=519315 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 471.5 bits (1212), Expect = 4.7e-129
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0


Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 323 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 382

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL
Sbjct: 383 SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 442

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 443 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 502

Query: 181 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 234
           SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR
Sbjct: 503 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 555

[Close]

BLAST of Cla97C11G214327 vs. TAIR 10
Match: ATCG00180.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 458.0 bits (1177), Expect = 1.0e-128
Identity = 225/233 (96.57%), Postives = 229/233 (98.28%), Query Frame = 0


Query: 1   MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQH ASNIGVAKS+IREK+PIVWEIL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSQIREKKPIVWEIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQ+FQPILVEGR ICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQSFQPILVEGRTICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 234
           SLEAQAEARLLMFSHMNLLS AIGDPISVPTQDMLIGLYVLTSG RRGICANR
Sbjct: 502 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGTRRGICANR 554

[Close]

BLAST of Cla97C11G214327 vs. TAIR 10
Match: ATCG00440.1 (NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 protein )

HSP 1 Score: 211.8 bits (538), Expect = 1.3e-54
Identity = 107/120 (89.17%), Postives = 114/120 (95.00%), Query Frame = 0


Query: 408 MFLLYEYDIFWVFLIISSVIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRI 467
           MFLLYEYDIFW FL+ISS IP+LAFLISGVL+P+ K PEKLSSYESGIEP+GDAW+QFRI
Sbjct: 1   MFLLYEYDIFWAFLLISSAIPVLAFLISGVLSPIRKGPEKLSSYESGIEPIGDAWLQFRI 60

Query: 468 RYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS 527
           RYYMFALVFVVFDVETVFLYPWAMSFDVLGVS FIEA IFVLILI+GLVYAWRKGALEWS
Sbjct: 61  RYYMFALVFVVFDVETVFLYPWAMSFDVLGVSAFIEAFIFVLILILGLVYAWRKGALEWS 120

[Close]

BLAST of Cla97C11G214327 vs. TAIR 10
Match: AT5G60040.1 (nuclear RNA polymerase C1 )

HSP 1 Score: 105.1 bits (261), Expect = 1.7e-22
Identity = 66/208 (31.73%), Postives = 106/208 (50.96%), Query Frame = 0


Query: 39  IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA-------------IELF 98
           ++GK GRFR  L GKRV+++GR+VI   P+L +   G+P  +A             IE  
Sbjct: 346 LKGKGGRFRANLSGKRVEFTGRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKL 405

Query: 99  QTFLIRGLIRQHFASN-----------IGVAKSKIREKEPIVWEILQEVMQGHPVLLNRA 158
           +  +  G  +   A N           +G  + +I ++  I   + + + +G  VL NR 
Sbjct: 406 RQCVRNGPNKYPGARNVRYPDGSSRTLVGDYRKRIADELAIGCIVDRHLQEGDVVLFNRQ 465

Query: 159 PTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFS 218
           P+LHR+ I   +  ++  R +  +  VC  +NADFDGD+M +HVP + EA+ EA  LM  
Sbjct: 466 PSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGV 525

Query: 219 HMNLLSSAIGDPISVPTQDMLIGLYVLT 223
             NL +   G+ +   TQD L   +++T
Sbjct: 526 QNNLCTPKNGEILVASTQDFLTSSFLIT 553

[Close]

BLAST of Cla97C11G214327 vs. TAIR 10
Match: AT5G60040.2 (nuclear RNA polymerase C1 )

HSP 1 Score: 105.1 bits (261), Expect = 1.7e-22
Identity = 66/208 (31.73%), Postives = 106/208 (50.96%), Query Frame = 0


Query: 39  IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA-------------IELF 98
           ++GK GRFR  L GKRV+++GR+VI   P+L +   G+P  +A             IE  
Sbjct: 356 LKGKGGRFRANLSGKRVEFTGRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKL 415

Query: 99  QTFLIRGLIRQHFASN-----------IGVAKSKIREKEPIVWEILQEVMQGHPVLLNRA 158
           +  +  G  +   A N           +G  + +I ++  I   + + + +G  VL NR 
Sbjct: 416 RQCVRNGPNKYPGARNVRYPDGSSRTLVGDYRKRIADELAIGCIVDRHLQEGDVVLFNRQ 475

Query: 159 PTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFS 218
           P+LHR+ I   +  ++  R +  +  VC  +NADFDGD+M +HVP + EA+ EA  LM  
Sbjct: 476 PSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGV 535

Query: 219 HMNLLSSAIGDPISVPTQDMLIGLYVLT 223
             NL +   G+ +   TQD L   +++T
Sbjct: 536 QNNLCTPKNGEILVASTQDFLTSSFLIT 563

[Close]

BLAST of Cla97C11G214327 vs. TAIR 10
Match: AT4G35800.1 (RNA polymerase II large subunit )

HSP 1 Score: 102.1 bits (253), Expect = 1.4e-21
Identity = 72/245 (29.39%), Postives = 115/245 (46.94%), Query Frame = 0


Query: 5   KLVQEAVDTLLDNGIRGQP-MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 64
           +L+Q  + T  DN + GQP       +  KS    ++ KEGR R  L+GKRVD+S R+VI
Sbjct: 305 QLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVI 364

Query: 65  VVGPSLSLHRCGLPREIAIEL--------FQTFLIRGLI--RQHFASNIGVAKSKIREKE 124
              P++++   G+P  IA+ L        +    ++ L+    H       AK  IR+  
Sbjct: 365 TPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKYIIRDDG 424

Query: 125 ----------------PIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICL 184
                            + +++ + +  G  VL NR P+LH++ I   +  ++      L
Sbjct: 425 QRLDLRYLKKSSDQHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRL 484

Query: 185 HPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIG 223
           +  V   +NADFDGD+M +HVP S E +AE   LM     ++S     P+    QD L+G
Sbjct: 485 NLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLG 544

The following BLAST results are available for this feature:

BLAST of Cla97C11G214327 vs. NCBI nr


Match Name	E-value	Identity	Description
AHM88912.1	9.7e-129	100.00	RNA polymerase beta [Lagenaria siceraria]	[more]
ASY96794.1	9.7e-129	100.00	RNA polymerase beta' subunit [Cucumis melo var. momordica] >ASY96968.1 RNA polym...	[more]
AHM88970.1	9.7e-129	100.00	RNA polymerase beta [Lagenaria siceraria]	[more]
YP_009560826.1	9.7e-129	100.00	RpoC1 [Trichosanthes kirilowii] >YP_009752403.1 RNA polymerase beta' subunit [Tr...	[more]
AHM91152.1	9.7e-129	100.00	RNA polymerase beta, partial [Lagenaria siceraria]	[more]

BLAST of Cla97C11G214327 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZP2	1.3e-131	100.00	DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus OX=3659 GN=rpoC1 PE...	[more]
A6MM27	7.0e-130	98.71	DNA-directed RNA polymerase subunit beta' OS=Buxus microphylla OX=153571 GN=rpoC...	[more]
Q8S8Y0	5.9e-129	97.42	DNA-directed RNA polymerase subunit beta' OS=Atropa belladonna OX=33113 GN=rpoC1...	[more]
P11705	7.7e-129	97.42	DNA-directed RNA polymerase subunit beta' OS=Spinacia oleracea OX=3562 GN=rpoC1 ...	[more]
B1NWE1	1.7e-128	97.42	DNA-directed RNA polymerase subunit beta' OS=Manihot esculenta OX=3983 GN=rpoC1 ...	[more]

BLAST of Cla97C11G214327 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A218KG20	4.7e-129	100.00	DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus var. hardwickii OX=...	[more]
A0A6M3S6B8	4.7e-129	100.00	DNA-directed RNA polymerase subunit beta' OS=Trichosanthes kirilowii OX=3677 GN=...	[more]
A0A1X9Q1T5	4.7e-129	100.00	DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus OX=3659 GN=rpoC1 PE...	[more]
A0A249RZJ2	4.7e-129	100.00	DNA-directed RNA polymerase subunit beta' OS=Cucumis melo var. cantalupensis OX=...	[more]
A0A1P8LE65	4.7e-129	100.00	DNA-directed RNA polymerase subunit gamma OS=Citrullus mucosospermus OX=519315 G...	[more]

BLAST of Cla97C11G214327 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00180.1	1.0e-128	96.57	DNA-directed RNA polymerase family protein	[more]
ATCG00440.1	1.3e-54	89.17	NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 protein	[more]
AT5G60040.1	1.7e-22	31.73	nuclear RNA polymerase C1	[more]
AT5G60040.2	1.7e-22	31.73	nuclear RNA polymerase C1	[more]
AT4G35800.1	1.4e-21	29.39	RNA polymerase II large subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006592	RNA polymerase, N-terminal	SMART	SM00663	rpolaneu7	coord: 1..222 e-value: 6.9E-104 score: 361.1
IPR000440	NADH:ubiquinone/plastoquinone oxidoreductase, chain 3	PFAM	PF00507	Oxidored_q4	coord: 430..526 e-value: 5.4E-35 score: 119.5
IPR042102	RNA polymerase Rpb1, domain 3 superfamily	GENE3D	1.10.274.100	RNA polymerase Rpb1, domain 3	coord: 197..262 e-value: 1.1E-8 score: 37.3
IPR038430	NADH:ubiquinone oxidoreductase, subunit 3 superfamily	GENE3D	1.20.58.1610	NADH:ubiquinone/plastoquinone oxidoreductase, chain 3	coord: 401..527 e-value: 9.8E-44 score: 150.3
None	No IPR available	GENE3D	2.40.40.20		coord: 40..193 e-value: 1.7E-46 score: 159.3
None	No IPR available	GENE3D	1.10.40.90		coord: 81..125 e-value: 2.9E-16 score: 61.3
None	No IPR available	PANTHER	PTHR19376:SF54	DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA'	coord: 1..267
None	No IPR available	PANTHER	PTHR19376	DNA-DIRECTED RNA POLYMERASE	coord: 1..267
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 3..226
IPR000722	RNA polymerase, alpha subunit	PFAM	PF00623	RNA_pol_Rpb1_2	coord: 108..192 e-value: 1.2E-26 score: 93.9 coord: 52..99 e-value: 3.2E-7 score: 30.7
IPR023043	NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid	HAMAP	MF_01394	NDH1_NuoA	coord: 410..527 score: 19.967321

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C11G214327.1	Cla97C11G214327.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0016651	oxidoreductase activity, acting on NAD(P)H