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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGGATGATAGAAATGCTAACCAAGTGACACCCTTATACACTAATAAAGGAGAAAGGCCATGGGTCATGAAAGAGAAGAAAGTATCAGCAACAACAGGTTTTATTACGGGACAGCTCATGATGTTCATATCGATCTATTATGCGCCTCTGCATCTAGCATTGGGTAGACCTCATACAATAACTGTCCTAGCTCTACCGTAAATAGCATAGTATTATCTGATTCATAGGGATACGAAAAAGTATTTTTAGTACCAAAATGGGGAATAGTAACAAAAGGGCGCATAATTTTTGTTACATTACTGTCAATTTGATATGTTGTTTTTTTCACCAAAAAAGAAGACCTTTCATTATTATTCATTGTTAATAATGATAAGAAACGAAAGTTTTTTTGAATGATTTTTGATCCTTCTTTACCCCATAATGATATTGAATAGAGGGAGTTATTTGTTTTTCCACTGTAGTTTTTACAATAAAGGTTTAAATGTCCATCAAAAGTAAGTAAGTAGATGCGAAACATATAAAATGCTGTTAATCCAGCTGTGGAACAGGCTATTATTGCGAAAATCGGTGAATACAACCAACTATCATTAAGAATTTCATCTTTGGACCAAAAGCAGGCAAGGGGTGGAATACCACAAAGAGAAAGGGTACCTAATAAAAAAGCATTTTTTGTAATTGGCACATGCTTTGTTAAACCACCCATAAGAACCATATTCTGACTTTTATCGGGAGAATATCCAACAACGGATTCCATTGAGTGAATAATGGACCCAGATCCTAAAAACAACAACGCTGGTCGGGATCTCTCTGGTAAAAACGAAAGCGGAATTCCTGATTATTCAGAACTTAATCCAATCGCCGTAACTTGGGCTCATCATGCTATACTCGTGGGGAAGGAAAAACGAGCAGTTTACGCTTTAGTAGCTACCGTTTCACTGGCTCTAGTATTCACAGGCTTTCAAGGAATGGAATATTATCAAGCACCCTTCACTATTTCGGATAGTATTTATGGTTCTACCTTTTTCTGTGTTCAACTCCGCGGGTTAGCTGGTTGGAAGGCATTGCTTGCTTTCTGCCGTCTATCTTTCCCTTCTTTCACTCGGTCAAGCGGCTTCGCTCCTTTCTTGTTGAGAATCTTATGTCTATAGGCTTTAAAAAACTCGTTTACTCTAACCCGGGTAAGGTTCTCCGGTGAATTCGCGACATTCCAGTACCAATGGATGTACCGAAGCCAATCCTTCATCCAGTTCCTGAGCAAAGACCACTCAAGGAAGTCCCGGACTCTTTCTGTTGGAAATCAAATAATTAATCAAGAGCCACCTTTAAATCCGAAGGTTTCATCTCTTGTTGAAGGATAG mRNA sequence ATGGATGATAGAAATGCTAACCAAGTGACACCCTTATACACTAATAAAGGAGAAAGGCCATGGGTCATGAAAGAGAAGAAAGTATCAGCAACAACAGCTGTGGAACAGGCTATTATTGCGAAAATCGGTGAATACAACCAACTATCATTAAGAATTTCATCTTTGGACCAAAAGCAGGCAAGGGGTGGAATACCACAAAGAGAAAGGGCTTTAAAAAACTCGTTTACTCTAACCCGGGTAAGGTTCTCCGGTGAATTCGCGACATTCCAGTACCAATGGATGTACCGAAGCCAATCCTTCATCCAGTTCCTGAGCAAAGACCACTCAAGGAAGTCCCGGACTCTTTCTGTTGGAAATCAAATAATTAATCAAGAGCCACCTTTAAATCCGAAGGTTTCATCTCTTGTTGAAGGATAG Coding sequence (CDS) ATGGATGATAGAAATGCTAACCAAGTGACACCCTTATACACTAATAAAGGAGAAAGGCCATGGGTCATGAAAGAGAAGAAAGTATCAGCAACAACAGCTGTGGAACAGGCTATTATTGCGAAAATCGGTGAATACAACCAACTATCATTAAGAATTTCATCTTTGGACCAAAAGCAGGCAAGGGGTGGAATACCACAAAGAGAAAGGGCTTTAAAAAACTCGTTTACTCTAACCCGGGTAAGGTTCTCCGGTGAATTCGCGACATTCCAGTACCAATGGATGTACCGAAGCCAATCCTTCATCCAGTTCCTGAGCAAAGACCACTCAAGGAAGTCCCGGACTCTTTCTGTTGGAAATCAAATAATTAATCAAGAGCCACCTTTAAATCCGAAGGTTTCATCTCTTGTTGAAGGATAG Protein sequence MDDRNANQVTPLYTNKGERPWVMKEKKVSATTAVEQAIIAKIGEYNQLSLRISSLDQKQARGGIPQRERALKNSFTLTRVRFSGEFATFQYQWMYRSQSFIQFLSKDHSRKSRTLSVGNQIINQEPPLNPKVSSLVEG
Homology
BLAST of Cla97C11G214080 vs. NCBI nr
Match: QNT11941.1 (hypothetical chloroplast RF1 [Lycoris aurea]) HSP 1 Score: 68.9 bits (167), Expect = 3.8e-08 Identity = 35/44 (79.55%), Postives = 40/44 (90.91%), Query Frame = 0
Query: 25 EKKVSATTAVEQAIIAKIGEYNQLSLRISSLDQKQARGGIPQRE 69
E++ + AV++AIIAKIGEYNQLSLRISSLDQKQARGGIPQRE
Sbjct: 599 EEESAEDPAVKEAIIAKIGEYNQLSLRISSLDQKQARGGIPQRE 642
BLAST of Cla97C11G214080 vs. ExPASy TrEMBL
Match: A0A7H1JKK2 (Protein TIC 214 OS=Lycoris aurea OX=152838 GN=ycf1 PE=3 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 1.8e-08 Identity = 35/44 (79.55%), Postives = 40/44 (90.91%), Query Frame = 0
Query: 25 EKKVSATTAVEQAIIAKIGEYNQLSLRISSLDQKQARGGIPQRE 69
E++ + AV++AIIAKIGEYNQLSLRISSLDQKQARGGIPQRE
Sbjct: 599 EEESAEDPAVKEAIIAKIGEYNQLSLRISSLDQKQARGGIPQRE 642
BLAST of Cla97C11G214080 vs. ExPASy TrEMBL
Match: A0A0E0RI64 (Uncharacterized protein OS=Oryza rufipogon OX=4529 PE=4 SV=1) HSP 1 Score: 63.2 bits (152), Expect = 1.0e-06 Identity = 32/42 (76.19%), Postives = 35/42 (83.33%), Query Frame = 0
Query: 28 VSATTAVEQAIIAKIGEYNQLSLRISSLDQKQARGGIPQRER 70
+ AV++AII K GEYNQL LRISSLDQKQARGGIPQRER
Sbjct: 7 IKINPAVKEAIIPKKGEYNQLLLRISSLDQKQARGGIPQRER 48
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| QNT11941.1 | 3.8e-08 | 79.55 | hypothetical chloroplast RF1 [Lycoris aurea] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A7H1JKK2 | 1.8e-08 | 79.55 | Protein TIC 214 OS=Lycoris aurea OX=152838 GN=ycf1 PE=3 SV=1 | [more] |
| A0A0E0RI64 | 1.0e-06 | 76.19 | Uncharacterized protein OS=Oryza rufipogon OX=4529 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015031 |
protein transport |
| cellular_component |
GO:0009706 |
chloroplast inner membrane |
| cellular_component |
GO:0016021 |
integral component of membrane |
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