Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exon CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGAAGCATATGCTATGCTCTTTGGTTTTCAACAAGTGCATGAATGGGGCTTTTTTGTGTTTTTTATTGAATTAGATTCTCAAATCCTTGTTAATGCTATCCATGAGGGTAATCTTAATGGATCTCCTTATGGAGTGATTATTGAGGAAATTAGAGAGTGGATGACAAAAAGTAATTCAGTTGGGATAAATTTTATCCCGAGGGGTGAGAATGGTGTGGCTTACAAGTTAGCTGAGTGA mRNA sequence
ATGACTGAAGCATATGCTATGCTCTTTGGTTTTCAACAAGTGCATGAATGGGGCTTTTTTGTGTTTTTTATTGAATTAGATTCTCAAATCCTTGTTAATGCTATCCATGAGGGTAATCTTAATGGATCTCCTTATGGAGTGATTATTGAGGAAATTAGAGAGTGGATGACAAAAAGTAATTCAGTTGGGATAAATTTTATCCCGAGGGGTGAGAATGGTGTGGCTTACAAGTTAGCTGAGTGA Coding sequence (CDS)
ATGACTGAAGCATATGCTATGCTCTTTGGTTTTCAACAAGTGCATGAATGGGGCTTTTTTGTGTTTTTTATTGAATTAGATTCTCAAATCCTTGTTAATGCTATCCATGAGGGTAATCTTAATGGATCTCCTTATGGAGTGATTATTGAGGAAATTAGAGAGTGGATGACAAAAAGTAATTCAGTTGGGATAAATTTTATCCCGAGGGGTGAGAATGGTGTGGCTTACAAGTTAGCTGAGTGA Protein sequence
MTEAYAMLFGFQQVHEWGFFVFFIELDSQILVNAIHEGNLNGSPYGVIIEEIREWMTKSNSVGINFIPRGENGVAYKLAE
Homology
BLAST of Cla97C10G191345 vs. NCBI nr
Match:
XP_024177931.1 (uncharacterized protein LOC112183838 [Rosa chinensis])
HSP 1 Score: 53.9 bits (128), Expect = 7.3e-04
Identity = 26/79 (32.91%), Postives = 43/79 (54.43%), Query Frame = 0
Query: 2 TEAYAMLFGFQQVHEWGFFVFFIELDSQILVNAIHEGNLNGSPYGVIIEEIREWMTKSNS 61 TE A++ G Q GF +E D Q+LV + L+ S G ++ +++E + +S Sbjct: 49 TELLALILGLQLAISHGFVPLVVESDCQVLVQVVPNQTLDYSDLGFLLYDLQELLQSVSS 108 Query: 62 VGINFIPRGENGVAYKLAE 81 +NF+ R N VA+KLA+ Sbjct: 109 AQLNFVRRQANSVAHKLAQ 127
BLAST of Cla97C10G191345 vs. NCBI nr
Match:
XP_042941317.1 (uncharacterized protein LOC122275981 [Carya illinoinensis])
HSP 1 Score: 53.9 bits (128), Expect = 7.3e-04
Identity = 25/65 (38.46%), Postives = 42/65 (64.62%), Query Frame = 0
Query: 16 EWGFFVFFIELDSQILVNAIHEGNLNGSPYGVIIEEIREWMTKSNSVGINFIPRGENGVA 75 E GF +E DSQ++VNA++ + YG IIE++R+ + + + G+ F+ R NG+A Sbjct: 146 ELGFSSVILEGDSQVIVNAVNSDEEIWAEYGNIIEDVRKVLLERPNWGVKFVYRESNGIA 205 Query: 76 YKLAE 81 +KLA+ Sbjct: 206 HKLAK 210
BLAST of Cla97C10G191345 vs. NCBI nr
Match:
XP_042958055.1 (uncharacterized protein LOC122293570 [Carya illinoinensis])
HSP 1 Score: 53.9 bits (128), Expect = 7.3e-04
Identity = 25/65 (38.46%), Postives = 42/65 (64.62%), Query Frame = 0
Query: 16 EWGFFVFFIELDSQILVNAIHEGNLNGSPYGVIIEEIREWMTKSNSVGINFIPRGENGVA 75 E GF +E DSQ++VNA++ + YG IIE++R+ + + + G+ F+ R NG+A Sbjct: 1137 EMGFSSVILEGDSQLIVNAVNSDEEIWAEYGNIIEDVRKVLLERPNWGVKFVYRESNGIA 1196 Query: 76 YKLAE 81 +KLA+ Sbjct: 1197 HKLAK 1201
The following BLAST results are available for this feature:
Match Name E-value Identity Description
XP_024177931.1 7.3e-04 32.91 uncharacterized protein LOC112183838 [Rosa chinensis] [more]
XP_042941317.1 7.3e-04 38.46 uncharacterized protein LOC122275981 [Carya illinoinensis] [more]
XP_042958055.1 7.3e-04 38.46 uncharacterized protein LOC122293570 [Carya illinoinensis] [more]
Match Name E-value Identity Description
Match Name E-value Identity Description
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31
A T G A C T G A A G C A T A T G C T A T G C T C T T T G G T T T T C A A C A A G T G C A T G A A T G G G G C T T T T T T G T G T T T T T T A T T G A A T T A G A T T C T C A A A T C C T T G T T A A T G C T A T C C A T G A G G G T A A T C T T A A T G G A T C T C C T T A T G G A G T G A T T A T T G A G G A A A T T A G A G A G T G G A T G A C A A A A A G T A A T T C A G T T G G G A T A A A T T T T A T C C C G A G G G G T G A G A A T G G T G T G G C T T A C A A G T T A G C T G A G T G A 20 40 60 80 100 120 140 160 180 200 220 240 Expect = 1.5E-6 / Score = 30.2 Expect = 8.0E-12 / Score = 45.1 Expect = 3.09446E-12 / Score = 55.398 Score = Sequence G3DSA:3.30.420.10 PF13456 cd06222 SSF53098
IPR Term IPR Description Source Source Term Source Description Alignment
IPR036397 Ribonuclease H superfamily GENE3D 3.30.420.10 coord: 1..80 e-value: 1.5E-6 score: 30.2
IPR002156 Ribonuclease H domain PFAM PF13456 RVT_3 coord: 2..79 e-value: 8.0E-12 score: 45.1
IPR044730 Ribonuclease H-like domain, plant type CDD cd06222 RNase_H_like coord: 1..79 e-value: 3.09446E-12 score: 55.398
IPR012337 Ribonuclease H-like superfamily SUPERFAMILY 53098 Ribonuclease H-like coord: 3..79
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category
Term Accession
Term Name
molecular_function
GO:0003676
nucleic acid binding
molecular_function
GO:0004523
RNA-DNA hybrid ribonuclease activity