Cla97C10G191345 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C10G191345
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	Unknown protein
Location	Cla97Chr10: 10891235 .. 10891477 (+)
RNA-Seq Expression	Cla97C10G191345
Synteny	Cla97C10G191345

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGAAGCATATGCTATGCTCTTTGGTTTTCAACAAGTGCATGAATGGGGCTTTTTTGTGTTTTTTATTGAATTAGATTCTCAAATCCTTGTTAATGCTATCCATGAGGGTAATCTTAATGGATCTCCTTATGGAGTGATTATTGAGGAAATTAGAGAGTGGATGACAAAAAGTAATTCAGTTGGGATAAATTTTATCCCGAGGGGTGAGAATGGTGTGGCTTACAAGTTAGCTGAGTGA

mRNA sequence

ATGACTGAAGCATATGCTATGCTCTTTGGTTTTCAACAAGTGCATGAATGGGGCTTTTTTGTGTTTTTTATTGAATTAGATTCTCAAATCCTTGTTAATGCTATCCATGAGGGTAATCTTAATGGATCTCCTTATGGAGTGATTATTGAGGAAATTAGAGAGTGGATGACAAAAAGTAATTCAGTTGGGATAAATTTTATCCCGAGGGGTGAGAATGGTGTGGCTTACAAGTTAGCTGAGTGA

Coding sequence (CDS)

ATGACTGAAGCATATGCTATGCTCTTTGGTTTTCAACAAGTGCATGAATGGGGCTTTTTTGTGTTTTTTATTGAATTAGATTCTCAAATCCTTGTTAATGCTATCCATGAGGGTAATCTTAATGGATCTCCTTATGGAGTGATTATTGAGGAAATTAGAGAGTGGATGACAAAAAGTAATTCAGTTGGGATAAATTTTATCCCGAGGGGTGAGAATGGTGTGGCTTACAAGTTAGCTGAGTGA

Protein sequence

MTEAYAMLFGFQQVHEWGFFVFFIELDSQILVNAIHEGNLNGSPYGVIIEEIREWMTKSNSVGINFIPRGENGVAYKLAE

Homology

[Close]

BLAST of Cla97C10G191345 vs. NCBI nr
Match: XP_024177931.1 (uncharacterized protein LOC112183838 [Rosa chinensis])

HSP 1 Score: 53.9 bits (128), Expect = 7.3e-04
Identity = 26/79 (32.91%), Postives = 43/79 (54.43%), Query Frame = 0


Query: 2   TEAYAMLFGFQQVHEWGFFVFFIELDSQILVNAIHEGNLNGSPYGVIIEEIREWMTKSNS 61
           TE  A++ G Q     GF    +E D Q+LV  +    L+ S  G ++ +++E +   +S
Sbjct: 49  TELLALILGLQLAISHGFVPLVVESDCQVLVQVVPNQTLDYSDLGFLLYDLQELLQSVSS 108

Query: 62  VGINFIPRGENGVAYKLAE 81
             +NF+ R  N VA+KLA+
Sbjct: 109 AQLNFVRRQANSVAHKLAQ 127

[Close]

BLAST of Cla97C10G191345 vs. NCBI nr
Match: XP_042941317.1 (uncharacterized protein LOC122275981 [Carya illinoinensis])

HSP 1 Score: 53.9 bits (128), Expect = 7.3e-04
Identity = 25/65 (38.46%), Postives = 42/65 (64.62%), Query Frame = 0


Query: 16  EWGFFVFFIELDSQILVNAIHEGNLNGSPYGVIIEEIREWMTKSNSVGINFIPRGENGVA 75
           E GF    +E DSQ++VNA++      + YG IIE++R+ + +  + G+ F+ R  NG+A
Sbjct: 146 ELGFSSVILEGDSQVIVNAVNSDEEIWAEYGNIIEDVRKVLLERPNWGVKFVYRESNGIA 205

Query: 76  YKLAE 81
           +KLA+
Sbjct: 206 HKLAK 210

[Close]

BLAST of Cla97C10G191345 vs. NCBI nr
Match: XP_042958055.1 (uncharacterized protein LOC122293570 [Carya illinoinensis])

HSP 1 Score: 53.9 bits (128), Expect = 7.3e-04
Identity = 25/65 (38.46%), Postives = 42/65 (64.62%), Query Frame = 0


Query: 16   EWGFFVFFIELDSQILVNAIHEGNLNGSPYGVIIEEIREWMTKSNSVGINFIPRGENGVA 75
            E GF    +E DSQ++VNA++      + YG IIE++R+ + +  + G+ F+ R  NG+A
Sbjct: 1137 EMGFSSVILEGDSQLIVNAVNSDEEIWAEYGNIIEDVRKVLLERPNWGVKFVYRESNGIA 1196

Query: 76   YKLAE 81
            +KLA+
Sbjct: 1197 HKLAK 1201

The following BLAST results are available for this feature:

BLAST of Cla97C10G191345 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_024177931.1	7.3e-04	32.91	uncharacterized protein LOC112183838 [Rosa chinensis]	[more]
XP_042941317.1	7.3e-04	38.46	uncharacterized protein LOC122275981 [Carya illinoinensis]	[more]
XP_042958055.1	7.3e-04	38.46	uncharacterized protein LOC122293570 [Carya illinoinensis]	[more]

BLAST of Cla97C10G191345 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cla97C10G191345 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cla97C10G191345 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..80 e-value: 1.5E-6 score: 30.2
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 2..79 e-value: 8.0E-12 score: 45.1
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 1..79 e-value: 3.09446E-12 score: 55.398
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 3..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C10G191345.1	Cla97C10G191345.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity