Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGATCCCAAATATGCCTATCCCTATCCACCTCCTCAAGGTATGTTTTTTACCTATTTATTTATGTTTAAACGGTTGAGCTATATTCAAGTTGAGTTTTGTTTGATTTAGTATTTTGGGTGTTGTGAATATATTTATTTGCAGGAGGGCCCCTTGTGATGGCGCCACCGCAATACGCCGCCCCGCCGCCCAAAAAAAACCAGGCTTCTTGGAGGGATGGTATGCCAAAAAGCTTGTTATTTGTTGATAAACTCTAGCTTTGTTGAATGGCTTTGGTTTCTGCTTGCATATATCAAAACCAGGCTTCCAGGAACGGCATCTAGACGCTACAAACTTTAGACTACATCTTTGCTTTTCCTTGTATGTTTCTTAGTCTATGGCTAACAGAGGGTTTAATTTTGTGTTTTCAGCCTTACAGCTCTGTGTTGCTGCTGTCTTGATCTTGATGAGTGTTGCTGTGACGGCCCTTCCATTATCTGTATTACTTCATCTAACCTTTGCTTGCCTTTGTAGCTCTAAATTGGCTTTTTTACTTCATCATACAAAATTCAAGACTTGTTTTTCCTTCCTTGGGAGTGGTTTGATTTTGTGTGAGCTACAAGTCCATCCTAAGGTTTTATACTTTTCTTTAGACATCCAATTTGAAAGAAGAAGGTACAAGTGA
mRNA sequence
ATGAGTGATCCCAAATATGCCTATCCCTATCCACCTCCTCAAGGAGGGCCCCTTGTGATGGCGCCACCGCAATACGCCGCCCCGCCGCCCAAAAAAAACCAGGCTTCTTGGAGGGATGCCTTACAGCTCTGTGTTGCTGCTGTCTTGATCTTGATGAGTGTTGCTGTGACGGCCCTTCCATTATCTGTATTACTTCATCTAACCTTTGCTTGCCTTTGTAGCTCTAAATTGGCTTTTTTACTTCATCATACAAAATTCAAGACTTGTTTTTCCTTCCTTGGGAGTGGTTTGATTTTGTGTGAGCTACAAGTCCATCCTAAGGTTTTATACTTTTCTTTAGACATCCAATTTGAAAGAAGAAGGTACAAGTGA
Coding sequence (CDS)
ATGAGTGATCCCAAATATGCCTATCCCTATCCACCTCCTCAAGGAGGGCCCCTTGTGATGGCGCCACCGCAATACGCCGCCCCGCCGCCCAAAAAAAACCAGGCTTCTTGGAGGGATGCCTTACAGCTCTGTGTTGCTGCTGTCTTGATCTTGATGAGTGTTGCTGTGACGGCCCTTCCATTATCTGTATTACTTCATCTAACCTTTGCTTGCCTTTGTAGCTCTAAATTGGCTTTTTTACTTCATCATACAAAATTCAAGACTTGTTTTTCCTTCCTTGGGAGTGGTTTGATTTTGTGTGAGCTACAAGTCCATCCTAAGGTTTTATACTTTTCTTTAGACATCCAATTTGAAAGAAGAAGGTACAAGTGA
Protein sequence
MSDPKYAYPYPPPQGGPLVMAPPQYAAPPPKKNQASWRDALQLCVAAVLILMSVAVTALPLSVLLHLTFACLCSSKLAFLLHHTKFKTCFSFLGSGLILCELQVHPKVLYFSLDIQFERRRYK
Homology
BLAST of Cla97C09G178180 vs. NCBI nr
Match:
KGN43811.1 (hypothetical protein Csa_017361 [Cucumis sativus])
HSP 1 Score: 66.2 bits (160), Expect = 2.2e-07
Identity = 47/69 (68.12%), Postives = 51/69 (73.91%), Query Frame = 0
Query: 1 MSDPKYAYPYPPPQG----GPLVMAPPQYAAPPPKKNQASWRDALQLCVAAVLILMSVAV 60
MSDPKYAYPYPPPQG GP VMAPPQYAAPPP++ + ALQL AAV LM+ AV
Sbjct: 1 MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPRR-----QPALQLYAAAV-SLMNAAV 60
Query: 61 TALPLSVLL 66
T LPLS LL
Sbjct: 61 T-LPLSFLL 62
BLAST of Cla97C09G178180 vs. NCBI nr
Match:
KAA0031406.1 (cysteine-rich and transmembrane domain-containing protein A-like [Cucumis melo var. makuwa] >TYK06857.1 cysteine-rich and transmembrane domain-containing protein A-like [Cucumis melo var. makuwa])
HSP 1 Score: 59.7 bits (143), Expect = 2.1e-05
Identity = 55/114 (48.25%), Postives = 61/114 (53.51%), Query Frame = 0
Query: 1 MSDPKYAYPYPPPQG----GPLVMAPPQYAAPPPKKN------------QASWRD----- 60
MSDPKYAYPYPPPQG GP VMAPPQYAAPPPK+ + W +
Sbjct: 1 MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPKRQPGFLEGWFGFPVRLVWLNRGFNF 60
Query: 61 ---ALQLCVAAVLILMSVAVTALPLSVLL---------HLTFACLCSSKLAFLL 82
ALQL AAV LM+ AVT LPLS LL + CL S +FLL
Sbjct: 61 VFAALQLYAAAV-SLMNAAVT-LPLSFLLDAMRDFFIAFVAVNCLISFLFSFLL 112
BLAST of Cla97C09G178180 vs. NCBI nr
Match:
KAG6571885.1 (hypothetical protein SDJN03_28613, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011569.1 hypothetical protein SDJN02_26475 [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 57.0 bits (136), Expect = 1.3e-04
Identity = 33/52 (63.46%), Postives = 37/52 (71.15%), Query Frame = 0
Query: 1 MSDPKYAYPYPPPQG----GPLVMAPPQYAAPPPKKNQASWRDALQLCVAAV 49
MSDPKYAYPYPPP G GP VMAPPQYAAPPPK+ L+ C+AA+
Sbjct: 1 MSDPKYAYPYPPPPGGYYQGPPVMAPPQYAAPPPKRQPG----FLEGCLAAL 48
BLAST of Cla97C09G178180 vs. NCBI nr
Match:
KAG8497388.1 (hypothetical protein CXB51_008632 [Gossypium anomalum])
HSP 1 Score: 54.3 bits (129), Expect = 8.6e-04
Identity = 39/59 (66.10%), Postives = 42/59 (71.19%), Query Frame = 0
Query: 1 MSDPKYAYPYPPPQG---GPLVMAPPQYAAPPPKKNQASWRDALQLCVAAVLILMSVAV 57
MSDPKYAYPY P QG GP VMAPPQYAAPPP++ LQL VA VL LM+VAV
Sbjct: 1 MSDPKYAYPY-PAQGYYQGPPVMAPPQYAAPPPRR-----EPVLQLYVAVVL-LMNVAV 52
BLAST of Cla97C09G178180 vs. ExPASy TrEMBL
Match:
A0A0A0K7L8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G069130 PE=4 SV=1)
HSP 1 Score: 66.2 bits (160), Expect = 1.1e-07
Identity = 47/69 (68.12%), Postives = 51/69 (73.91%), Query Frame = 0
Query: 1 MSDPKYAYPYPPPQG----GPLVMAPPQYAAPPPKKNQASWRDALQLCVAAVLILMSVAV 60
MSDPKYAYPYPPPQG GP VMAPPQYAAPPP++ + ALQL AAV LM+ AV
Sbjct: 1 MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPRR-----QPALQLYAAAV-SLMNAAV 60
Query: 61 TALPLSVLL 66
T LPLS LL
Sbjct: 61 T-LPLSFLL 62
BLAST of Cla97C09G178180 vs. ExPASy TrEMBL
Match:
A0A5A7SN04 (Cysteine-rich and transmembrane domain-containing protein A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001610 PE=4 SV=1)
HSP 1 Score: 59.7 bits (143), Expect = 9.9e-06
Identity = 55/114 (48.25%), Postives = 61/114 (53.51%), Query Frame = 0
Query: 1 MSDPKYAYPYPPPQG----GPLVMAPPQYAAPPPKKN------------QASWRD----- 60
MSDPKYAYPYPPPQG GP VMAPPQYAAPPPK+ + W +
Sbjct: 1 MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPKRQPGFLEGWFGFPVRLVWLNRGFNF 60
Query: 61 ---ALQLCVAAVLILMSVAVTALPLSVLL---------HLTFACLCSSKLAFLL 82
ALQL AAV LM+ AVT LPLS LL + CL S +FLL
Sbjct: 61 VFAALQLYAAAV-SLMNAAVT-LPLSFLLDAMRDFFIAFVAVNCLISFLFSFLL 112
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KGN43811.1 | 2.2e-07 | 68.12 | hypothetical protein Csa_017361 [Cucumis sativus] | [more] |
| KAA0031406.1 | 2.1e-05 | 48.25 | cysteine-rich and transmembrane domain-containing protein A-like [Cucumis melo v... | [more] |
| KAG6571885.1 | 1.3e-04 | 63.46 | hypothetical protein SDJN03_28613, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KAG8497388.1 | 8.6e-04 | 66.10 | hypothetical protein CXB51_008632 [Gossypium anomalum] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0K7L8 | 1.1e-07 | 68.12 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G069130 PE=4 SV=1 | [more] |
| A0A5A7SN04 | 9.9e-06 | 48.25 | Cysteine-rich and transmembrane domain-containing protein A-like OS=Cucumis melo... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
