Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCTCACTCAAACCCTCCACTCACCACAATGGATCCTCATTCCCTTACAATTATTCTTTAAATCTTCAACAGAATCCCATTCCAATCATTAGAATTAAGCCCAATTTCACACCTGAATTCCACAGCAGAACAACCTTCAGAACCCGCGCCGAACAACCCGGATCAGGCAACGGCGCTGAAAGACGGACTTTCTTGACCATCGAAGAAGCCGGTCTGGTTGAAGTATCCGGCCTCGGCACGCACGAACGATTTCTCTGTCGTTTAACCGTATAATCTCTGTTTCTGGTCTTTTTGAATACACATGTTGCCTTAATCCTCAATTATTATTGAAGCTGTTGGTTGTGTTTGTGTAGATATCGTCCCTGAATTTACTGAGAGTGATAGCGGAGGAAGAGGAATGTTCCATTGAAGAGTTGAATGCGGGAAGATTATGCGATTGGTTTCTCAAGGATAAGTTGAAAAGAGAGCAGAATTTGGATTCTGCTGTTCTTCAATGGGACGATTCTGACCCTCTCTTCTGA
mRNA sequence
ATGATCTCACTCAAACCCTCCACTCACCACAATGGATCCTCATTCCCTTACAATTATTCTTTAAATCTTCAACAGAATCCCATTCCAATCATTAGAATTAAGCCCAATTTCACACCTGAATTCCACAGCAGAACAACCTTCAGAACCCGCGCCGAACAACCCGGATCAGGCAACGGCGCTGAAAGACGGACTTTCTTGACCATCGAAGAAGCCGGTCTGGTTGAAGTATCCGGCCTCGGCACGCACGAACGATTTCTCTGTCGTTTAACCATATCGTCCCTGAATTTACTGAGAGTGATAGCGGAGGAAGAGGAATGTTCCATTGAAGAGTTGAATGCGGGAAGATTATGCGATTGGTTTCTCAAGGATAAGTTGAAAAGAGAGCAGAATTTGGATTCTGCTGTTCTTCAATGGGACGATTCTGACCCTCTCTTCTGA
Coding sequence (CDS)
ATGATCTCACTCAAACCCTCCACTCACCACAATGGATCCTCATTCCCTTACAATTATTCTTTAAATCTTCAACAGAATCCCATTCCAATCATTAGAATTAAGCCCAATTTCACACCTGAATTCCACAGCAGAACAACCTTCAGAACCCGCGCCGAACAACCCGGATCAGGCAACGGCGCTGAAAGACGGACTTTCTTGACCATCGAAGAAGCCGGTCTGGTTGAAGTATCCGGCCTCGGCACGCACGAACGATTTCTCTGTCGTTTAACCATATCGTCCCTGAATTTACTGAGAGTGATAGCGGAGGAAGAGGAATGTTCCATTGAAGAGTTGAATGCGGGAAGATTATGCGATTGGTTTCTCAAGGATAAGTTGAAAAGAGAGCAGAATTTGGATTCTGCTGTTCTTCAATGGGACGATTCTGACCCTCTCTTCTGA
Protein sequence
MISLKPSTHHNGSSFPYNYSLNLQQNPIPIIRIKPNFTPEFHSRTTFRTRAEQPGSGNGAERRTFLTIEEAGLVEVSGLGTHERFLCRLTISSLNLLRVIAEEEECSIEELNAGRLCDWFLKDKLKREQNLDSAVLQWDDSDPLF
Homology
BLAST of Cla97C01G022360 vs. NCBI nr
Match:
XP_038881387.1 (uncharacterized protein LOC120072922 [Benincasa hispida])
HSP 1 Score: 248.8 bits (634), Expect = 2.8e-62
Identity = 131/148 (88.51%), Postives = 136/148 (91.89%), Query Frame = 0
Query: 1 MISLKPSTHHNGSSFPYNYSLNLQQNPIP-IIRIKPNFTPEFHSR-TTFRTRAEQPG-SG 60
MISL PSTHHNGSSF YN S NLQQN IP IIRIKPNF P FH++ TTFRT+AEQ G SG
Sbjct: 1 MISLNPSTHHNGSSFHYN-SSNLQQNFIPTIIRIKPNFAPPFHTKTTTFRTQAEQAGSSG 60
Query: 61 NGAERRTFLTIEEAGLVEVSGLGTHERFLCRLTISSLNLLRVIAEEEECSIEELNAGRLC 120
NGA+RRTFLTIEEAGLVEVSGL THERFLCRLTISSLNLLRVIAEEE+CSIEELNAGRLC
Sbjct: 61 NGAQRRTFLTIEEAGLVEVSGLSTHERFLCRLTISSLNLLRVIAEEEKCSIEELNAGRLC 120
Query: 121 DWFLKDKLKREQNLDSAVLQWDDSDPLF 146
DWFLKDKLKREQNLDSAVLQWDDSDPLF
Sbjct: 121 DWFLKDKLKREQNLDSAVLQWDDSDPLF 147
BLAST of Cla97C01G022360 vs. NCBI nr
Match:
XP_004134733.1 (uncharacterized protein LOC101211873 [Cucumis sativus] >KGN49180.1 hypothetical protein Csa_002941 [Cucumis sativus])
HSP 1 Score: 237.7 bits (605), Expect = 6.5e-59
Identity = 123/148 (83.11%), Postives = 132/148 (89.19%), Query Frame = 0
Query: 1 MISLKPSTHHNG--SSFPYNYSLNLQQNPIPIIRI-KPNFTPEFHSRTTFRTRAEQPGSG 60
MISLKPSTHHNG +SFPYN S QQNPIPIIRI KPNF+ H++TTFRT A+ GSG
Sbjct: 1 MISLKPSTHHNGFDTSFPYN-SSKFQQNPIPIIRITKPNFS---HTKTTFRTHAQPSGSG 60
Query: 61 NGAERRTFLTIEEAGLVEVSGLGTHERFLCRLTISSLNLLRVIAEEEECSIEELNAGRLC 120
G ++RTFLTIEEAGLVEVSGL THERFLCRLTISSLNLL+VIAEEE+CSIEELNAGRLC
Sbjct: 61 KGPQKRTFLTIEEAGLVEVSGLSTHERFLCRLTISSLNLLKVIAEEEKCSIEELNAGRLC 120
Query: 121 DWFLKDKLKREQNLDSAVLQWDDSDPLF 146
DWFLKDKLKREQNLDSAVLQWDDSDPLF
Sbjct: 121 DWFLKDKLKREQNLDSAVLQWDDSDPLF 144
BLAST of Cla97C01G022360 vs. NCBI nr
Match:
XP_022977984.1 (uncharacterized protein LOC111478111 [Cucurbita maxima])
HSP 1 Score: 235.7 bits (600), Expect = 2.5e-58
Identity = 119/145 (82.07%), Postives = 127/145 (87.59%), Query Frame = 0
Query: 1 MISLKPSTHHNGSSFPYNYSLNLQQNPIPIIRIKPNFTPEFHSRTTFRTRAEQPGSGNGA 60
MISLKPS HHNGSSF N S NL Q PI R++ NF P F ++TTFR RAEQ SGNGA
Sbjct: 1 MISLKPSPHHNGSSFLSN-SSNLHQKLNPITRLRSNFPPPFRTKTTFRIRAEQAESGNGA 60
Query: 61 ERRTFLTIEEAGLVEVSGLGTHERFLCRLTISSLNLLRVIAEEEECSIEELNAGRLCDWF 120
+RRTFLT+EEAGLVEVSGL THERFLCRLTISSLNLL+VIAEEE+CSIEELNAGRLCDWF
Sbjct: 61 QRRTFLTLEEAGLVEVSGLSTHERFLCRLTISSLNLLKVIAEEEKCSIEELNAGRLCDWF 120
Query: 121 LKDKLKREQNLDSAVLQWDDSDPLF 146
LKDKLKREQNLDSAVLQWDDSDPLF
Sbjct: 121 LKDKLKREQNLDSAVLQWDDSDPLF 144
BLAST of Cla97C01G022360 vs. NCBI nr
Match:
XP_023544671.1 (uncharacterized protein LOC111804184 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 235.0 bits (598), Expect = 4.2e-58
Identity = 118/145 (81.38%), Postives = 127/145 (87.59%), Query Frame = 0
Query: 1 MISLKPSTHHNGSSFPYNYSLNLQQNPIPIIRIKPNFTPEFHSRTTFRTRAEQPGSGNGA 60
MISLKPS HHNGSSF +N S NL Q PI R + NF P F ++TTF+ RAEQ SGNGA
Sbjct: 1 MISLKPSPHHNGSSFLFN-SSNLHQKLSPITRHRSNFPPPFRTKTTFKIRAEQAESGNGA 60
Query: 61 ERRTFLTIEEAGLVEVSGLGTHERFLCRLTISSLNLLRVIAEEEECSIEELNAGRLCDWF 120
+RRTFLT+EEAGLVEVSGL THERFLCRLTISSLNLL+VIAEEE+CSIEELNAGRLCDWF
Sbjct: 61 QRRTFLTLEEAGLVEVSGLSTHERFLCRLTISSLNLLKVIAEEEKCSIEELNAGRLCDWF 120
Query: 121 LKDKLKREQNLDSAVLQWDDSDPLF 146
LKDKLKREQNLDSAVLQWDDSDPLF
Sbjct: 121 LKDKLKREQNLDSAVLQWDDSDPLF 144
BLAST of Cla97C01G022360 vs. NCBI nr
Match:
XP_022949732.1 (uncharacterized protein LOC111453037 [Cucurbita moschata] >KAG6603726.1 hypothetical protein SDJN03_04335, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033905.1 hypothetical protein SDJN02_03630 [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 231.9 bits (590), Expect = 3.6e-57
Identity = 118/145 (81.38%), Postives = 125/145 (86.21%), Query Frame = 0
Query: 1 MISLKPSTHHNGSSFPYNYSLNLQQNPIPIIRIKPNFTPEFHSRTTFRTRAEQPGSGNGA 60
MISLKPS HHNGSSF N S NL Q PI R + NF P ++TTFR RAEQ SGNGA
Sbjct: 1 MISLKPSPHHNGSSFLSN-SSNLHQKLSPITRHRSNFPPPLRTKTTFRIRAEQAESGNGA 60
Query: 61 ERRTFLTIEEAGLVEVSGLGTHERFLCRLTISSLNLLRVIAEEEECSIEELNAGRLCDWF 120
+RRTFLT+EEAGLVEVSGL THERFLCRLTISSLNLL+VIAEEE+CSIEELNAGRLCDWF
Sbjct: 61 QRRTFLTLEEAGLVEVSGLSTHERFLCRLTISSLNLLKVIAEEEKCSIEELNAGRLCDWF 120
Query: 121 LKDKLKREQNLDSAVLQWDDSDPLF 146
LKDKLKREQNLDSAVLQWDDSDPLF
Sbjct: 121 LKDKLKREQNLDSAVLQWDDSDPLF 144
BLAST of Cla97C01G022360 vs. ExPASy TrEMBL
Match:
A0A0A0KHI4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G516880 PE=4 SV=1)
HSP 1 Score: 237.7 bits (605), Expect = 3.1e-59
Identity = 123/148 (83.11%), Postives = 132/148 (89.19%), Query Frame = 0
Query: 1 MISLKPSTHHNG--SSFPYNYSLNLQQNPIPIIRI-KPNFTPEFHSRTTFRTRAEQPGSG 60
MISLKPSTHHNG +SFPYN S QQNPIPIIRI KPNF+ H++TTFRT A+ GSG
Sbjct: 1 MISLKPSTHHNGFDTSFPYN-SSKFQQNPIPIIRITKPNFS---HTKTTFRTHAQPSGSG 60
Query: 61 NGAERRTFLTIEEAGLVEVSGLGTHERFLCRLTISSLNLLRVIAEEEECSIEELNAGRLC 120
G ++RTFLTIEEAGLVEVSGL THERFLCRLTISSLNLL+VIAEEE+CSIEELNAGRLC
Sbjct: 61 KGPQKRTFLTIEEAGLVEVSGLSTHERFLCRLTISSLNLLKVIAEEEKCSIEELNAGRLC 120
Query: 121 DWFLKDKLKREQNLDSAVLQWDDSDPLF 146
DWFLKDKLKREQNLDSAVLQWDDSDPLF
Sbjct: 121 DWFLKDKLKREQNLDSAVLQWDDSDPLF 144
BLAST of Cla97C01G022360 vs. ExPASy TrEMBL
Match:
A0A6J1ISV2 (uncharacterized protein LOC111478111 OS=Cucurbita maxima OX=3661 GN=LOC111478111 PE=4 SV=1)
HSP 1 Score: 235.7 bits (600), Expect = 1.2e-58
Identity = 119/145 (82.07%), Postives = 127/145 (87.59%), Query Frame = 0
Query: 1 MISLKPSTHHNGSSFPYNYSLNLQQNPIPIIRIKPNFTPEFHSRTTFRTRAEQPGSGNGA 60
MISLKPS HHNGSSF N S NL Q PI R++ NF P F ++TTFR RAEQ SGNGA
Sbjct: 1 MISLKPSPHHNGSSFLSN-SSNLHQKLNPITRLRSNFPPPFRTKTTFRIRAEQAESGNGA 60
Query: 61 ERRTFLTIEEAGLVEVSGLGTHERFLCRLTISSLNLLRVIAEEEECSIEELNAGRLCDWF 120
+RRTFLT+EEAGLVEVSGL THERFLCRLTISSLNLL+VIAEEE+CSIEELNAGRLCDWF
Sbjct: 61 QRRTFLTLEEAGLVEVSGLSTHERFLCRLTISSLNLLKVIAEEEKCSIEELNAGRLCDWF 120
Query: 121 LKDKLKREQNLDSAVLQWDDSDPLF 146
LKDKLKREQNLDSAVLQWDDSDPLF
Sbjct: 121 LKDKLKREQNLDSAVLQWDDSDPLF 144
BLAST of Cla97C01G022360 vs. ExPASy TrEMBL
Match:
A0A6J1GCY7 (uncharacterized protein LOC111453037 OS=Cucurbita moschata OX=3662 GN=LOC111453037 PE=4 SV=1)
HSP 1 Score: 231.9 bits (590), Expect = 1.7e-57
Identity = 118/145 (81.38%), Postives = 125/145 (86.21%), Query Frame = 0
Query: 1 MISLKPSTHHNGSSFPYNYSLNLQQNPIPIIRIKPNFTPEFHSRTTFRTRAEQPGSGNGA 60
MISLKPS HHNGSSF N S NL Q PI R + NF P ++TTFR RAEQ SGNGA
Sbjct: 1 MISLKPSPHHNGSSFLSN-SSNLHQKLSPITRHRSNFPPPLRTKTTFRIRAEQAESGNGA 60
Query: 61 ERRTFLTIEEAGLVEVSGLGTHERFLCRLTISSLNLLRVIAEEEECSIEELNAGRLCDWF 120
+RRTFLT+EEAGLVEVSGL THERFLCRLTISSLNLL+VIAEEE+CSIEELNAGRLCDWF
Sbjct: 61 QRRTFLTLEEAGLVEVSGLSTHERFLCRLTISSLNLLKVIAEEEKCSIEELNAGRLCDWF 120
Query: 121 LKDKLKREQNLDSAVLQWDDSDPLF 146
LKDKLKREQNLDSAVLQWDDSDPLF
Sbjct: 121 LKDKLKREQNLDSAVLQWDDSDPLF 144
BLAST of Cla97C01G022360 vs. ExPASy TrEMBL
Match:
A0A6J1CKG5 (uncharacterized protein LOC111012432 OS=Momordica charantia OX=3673 GN=LOC111012432 PE=4 SV=1)
HSP 1 Score: 191.4 bits (485), Expect = 2.6e-45
Identity = 107/149 (71.81%), Postives = 113/149 (75.84%), Query Frame = 0
Query: 1 MISLKPSTHHNGSSFPYNYSLNLQQNPIPIIRIKPNFTPE-FHSRTTFR---TRAEQPGS 60
MISL P + NGSSFP+ S L PIP P T + FR RAEQ G
Sbjct: 1 MISLGPCAYQNGSSFPFYSSNLLNLRPIPSNFALPLPTNSIILGKRNFRFRVVRAEQAG- 60
Query: 61 GNGAERRTFLTIEEAGLVEVSGLGTHERFLCRLTISSLNLLRVIAEEEECSIEELNAGRL 120
GN A+RRTFLT+EEAGLVEVSGL THERFLCRLTISSLNLLRVIAEEE+CSIEELNAGRL
Sbjct: 61 GNSAQRRTFLTVEEAGLVEVSGLSTHERFLCRLTISSLNLLRVIAEEEKCSIEELNAGRL 120
Query: 121 CDWFLKDKLKREQNLDSAVLQWDDSDPLF 146
CDWFLKDKLKREQNLDSAVLQWDDSD F
Sbjct: 121 CDWFLKDKLKREQNLDSAVLQWDDSDLTF 148
BLAST of Cla97C01G022360 vs. ExPASy TrEMBL
Match:
A0A6P4A1U2 (uncharacterized protein LOC107422001 OS=Ziziphus jujuba OX=326968 GN=LOC107422001 PE=4 SV=1)
HSP 1 Score: 166.0 bits (419), Expect = 1.2e-37
Identity = 93/152 (61.18%), Postives = 110/152 (72.37%), Query Frame = 0
Query: 1 MISLKP-STHHNGSSF--PYNYSLNLQQNPIPIIRIKP-NFTPEFHSRTTFRTRAEQPGS 60
M+SLKP THH SS P+N ++Q +I+P P + R + Q
Sbjct: 1 MLSLKPCKTHHRLSSLSSPFNLQNIIKQTQ---TKIRPTKLAPRRSLSLSIRGCSGQEEK 60
Query: 61 G---NGAERRTFLTIEEAGLVEVSGLGTHERFLCRLTISSLNLLRVIAEEEECSIEELNA 120
G ++RRTFLT+EEAGLVE+SGLGTHERFLCRLTISSLNLLRVIAE+E CSIEELNA
Sbjct: 61 GRENKSSQRRTFLTLEEAGLVEISGLGTHERFLCRLTISSLNLLRVIAEQEGCSIEELNA 120
Query: 121 GRLCDWFLKDKLKREQNLDSAVLQWDDSDPLF 146
GR+CDWF+KDKLKREQN+DSAVLQWDDS+ F
Sbjct: 121 GRVCDWFVKDKLKREQNIDSAVLQWDDSESPF 149
BLAST of Cla97C01G022360 vs. TAIR 10
Match:
AT4G21445.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )
HSP 1 Score: 148.3 bits (373), Expect = 4.8e-36
Identity = 70/99 (70.71%), Postives = 83/99 (83.84%), Query Frame = 0
Query: 44 RTTFRTRAEQPGSGNGAERRTFLTIEEAGLVEVSGLGTHERFLCRLTISSLNLLRVIAEE 103
R + T E+ N ERR+FL++ EAGLVE+SGLG HE+FLCRLTISSLNLLRVI+E+
Sbjct: 53 RASAETGEEESDDQNKPERRSFLSLAEAGLVEISGLGAHEKFLCRLTISSLNLLRVISEQ 112
Query: 104 EECSIEELNAGRLCDWFLKDKLKREQNLDSAVLQWDDSD 143
E CSIEELNAG++CDWFLKDKLKRE N++SAVLQWDD D
Sbjct: 113 EGCSIEELNAGKICDWFLKDKLKREHNIESAVLQWDDPD 151
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_038881387.1 | 2.8e-62 | 88.51 | uncharacterized protein LOC120072922 [Benincasa hispida] | [more] |
| XP_004134733.1 | 6.5e-59 | 83.11 | uncharacterized protein LOC101211873 [Cucumis sativus] >KGN49180.1 hypothetical ... | [more] |
| XP_022977984.1 | 2.5e-58 | 82.07 | uncharacterized protein LOC111478111 [Cucurbita maxima] | [more] |
| XP_023544671.1 | 4.2e-58 | 81.38 | uncharacterized protein LOC111804184 [Cucurbita pepo subsp. pepo] | [more] |
| XP_022949732.1 | 3.6e-57 | 81.38 | uncharacterized protein LOC111453037 [Cucurbita moschata] >KAG6603726.1 hypothet... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0KHI4 | 3.1e-59 | 83.11 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G516880 PE=4 SV=1 | [more] |
| A0A6J1ISV2 | 1.2e-58 | 82.07 | uncharacterized protein LOC111478111 OS=Cucurbita maxima OX=3661 GN=LOC111478111... | [more] |
| A0A6J1GCY7 | 1.7e-57 | 81.38 | uncharacterized protein LOC111453037 OS=Cucurbita moschata OX=3662 GN=LOC1114530... | [more] |
| A0A6J1CKG5 | 2.6e-45 | 71.81 | uncharacterized protein LOC111012432 OS=Momordica charantia OX=3673 GN=LOC111012... | [more] |
| A0A6P4A1U2 | 1.2e-37 | 61.18 | uncharacterized protein LOC107422001 OS=Ziziphus jujuba OX=326968 GN=LOC10742200... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT4G21445.1 | 4.8e-36 | 70.71 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... | [more] |
