Cla97C01G012960 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C01G012960
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	recQ-mediated genome instability protein 2
Location	Cla97Chr01: 26739990 .. 26743435 (+)
RNA-Seq Expression	Cla97C01G012960
Synteny	Cla97C01G012960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCGGCTCACAATCATTCGTAGTAGTTAATTCTTAGGATCACGATAATACATAATAATGGTCCCGTAAGACCACAGTCAGACATAGTGTAGTGAACCCGTCTAACTCACAATTATATATAGTAGTGAACTCGTTTGACCCAGAGTGATTCATAGTAAGTGTTAAAATTAGTTTACATAAAAGTTTAGCGGCGTTGCAGCTTAGCGCCAAAACAAGGGAAGTGCAGAGAGAGATATGGATTACAGCTTAGCGGCGTTGAAGCTTCTGTGCCGGCAGCTCAAAGACGCCCGCCAAACTCCGTCCAACAACGCCGCCACTCTCGGCGGCATTCTCTTCCAACGCGCCTGGCTTCAGGTCCTCTCTTTCAAATCCTTCCCTTCTCTCCCTTTCTCACAATCCTTCTATCTAATCAGAGTTCTCCCAGCAGGGGATTTTGGTCTCCGTCGACAAACAAAATGGTAAATTGATTCTCGACGATGGCACCGGCACCGTCGACCTCTCTCTCTCTCGCGACTTCCGTCTCCGCCCTTGGAGCCTCGGTATTTGCCCTAATATTTTCCGTTCTCTTTTTTTTCTGCTGCCTTTTGAGTTGGTTTCTCTCGCTAGTCGCTTTTTCTTTGTTTGTTTTATACAGGGATGTATGTGATGGTTGTTGGCGCTTTTGTCGTCCGGACGAATGAACCGCCCATTATTGCGGTGAGATTCAGATTTCATCCTCTCTTCCTTTTTGTTTCCTCGCCTTTTCTTCCATGATGACCCTCTTGTTCTTGACATATAGAGAAGAATTGATTTCCCCTGATTTTTGTTTTCTTGTAAAGAGAGAATGAAGTAAATAACCTACTAAAATATCATCAGTTTACCAATTTTGTTGTGGTGAGATCACTGACATTCTAATTACTTCGTTTGAGTTGAATGTAGTATTTACTAATTTGGGTTGATCATGTTCGAGCTTTCTTAAATCTTATGGATATTTGGTTTGAACGAAATGCCAGCATCTTCACAGTAAGAGTCGTAATATCAACTATTTTAAAGAACCCACTTCTCTTTTAACGATTACTTGCAGTATATCGTATCCTCCATTTTGTAATTATAGATTATCTACCCTCATTAATCAATGAAGGTGCTGTTTGTAATTAATCTAATTAGAACTTTTGTATTCCACTTCATCATATCAATGAATGAGATCTTTGTTTCCTAACAAATTAGAATGTTTTTGAATGCATAAGAGATTGATGCTTAGTTTTTGGATTATTCAACTGCATTTTCTTGAGACAATGGAACATTGATGATTCCACTACTTTCAAGAAGTCTATTGAACCGGTTCTTTTTAAGATGTATGCATCCCTTTAAAGATTACAGCCTAACTTCTCTTAATACGTGTTGGAGATTTTTTTGTATCAGTCAATGTCATTCAATCAATGAAATCTTTGTTGTCTACTTAGAAGAATGAAGTGTTGCTGTGGTGCTTTATGGTCATTATATGTGGCATCAGCTAGTTTTTGGATGATCGTTGTGCTAGGGAGGGTTGACAACAAAATCTGGAGTCTAGAATATTGACTTAATCTTTTGTCCTTGGTATTTTTTGGTTTCTACCTTTTGTATAGCTCGTTGTAAAGTTTCCTATGTTCTCCATATGCCATATGGTGCGATTTTTCGTGCTCTTTTTCTCTTTTTATGGGTGTAGCAGATAAGCCAACTGCCATAGAAGCATGTTGGTGGATAGTATTTTCTTCTTTTTTTTTTTTTTCTGATAATTATCAATTTCATTGATTGAATGAAATATCTAAAGAGACACAAAAGGACCCCATTTTTATATACCATTTCTCCAATTTGCAATAAGAAAATTTAAACTATGAACTTGATGGGCCGTAGATTTTTACACCAAAATAGAGCTTGGAAAACAGCTAAATCAAGAACATCCTCATATCTTTCTTTGTCTTGAAAAATTCTGTTGTTTCACCCAAATCTTCCATAAAACATCTCTTATCATACTTGACCATATTTGAGCCTTAGTAGCTTTGAAAGGGTGATCTGTGAGCAACATGTTGATCCAATCAAGAGAGGCCAAAGGATTATTCAGTATTTTCAGGTGTTTCTTTTAGTATTCATAATATTTATATTGCTATCTTTGAGATGGTTGACACTTAATTTGAAGCAAGTTTAATGAAAATCAAACTTTCAGCATTTTAGCTGTCTTTCCCTCTTTCCATTCCTTTCTTTCTACTACGCCTTCATTTGCCAATGTCCAACTTGTAGGCTGTAGCTGTGATGCTTTGTTTCATCGGCATTTAGTGTTTGATGTGCTGGTGATTAACTTTCTTAGGAGCTAGGGGCTATATTGTCCCCATAACATGACAACAGCCCAACTATTATAGATAACACTAAATTTCTTTCCATATCTAATACTTAGGAGGAAAGCAAAAGATTGTGTTCATAACTTAAGGTTATTTAATCGCATAGAGTTTTGAAGTTAGTTAATTTTATGATTTTATGTTTGTATTAGGTCCACAAGATTGTTGATCTCTCAAAGTTTCCTGGTCGAGAGGCAATGTGGTACCTTGAAGTCATGGAAGCATACAAAATGTTCTATGAACCTCTGATTGAAGAATTTTCGTAACTTGTTTTGTTGACTCAACAGGTGATGATTATTTTATTTACACGTTGATCCTGTTATGAATAATGCATCAATTTGTTGTAAGCCCACAGAATATATATATATATATTTTAATCTCTTATTACATATTTGTAAACTTCAATTGAAATTCCCACCTCATATATTGTTATGATAATCTTCTGGTCTCGTAAGATGACAACTCTAAGTTAGAGAATCCAAGTATTATCCTTTCCCTTGGTAGGCATAATTGAGAAAACATAAACAGATAAGTATAGGCAGATTAGGAGAGCCAATCTTGTTGCTTTGTGTCTCTGATGATGTCAAAAGAGATTTTTGCCATGTACTGAATTACTATAGTAATTGGGGTAATTCTTGGTTTAATGTTTTAGTTTCTTTGCAGTAATTTTAAGTACATAGTTTGTTCTAAATACCCTATAAATGGAGGTTTCCTATCATGTTATTGATAACTTTGTGATGTAGGACACATCTAATTTCAATGGAAGGCTAGATGTGGAGAAATCCTTTGGATTGGACCAAAAATGTAGAAATTCTTGGTGGGGAAATTTGGGGGCAATTGCACACATCACAAAACTTGTAAAGATTTTCAGATTGTAGATGGTTTTTGGATACCACATACTTATTTTTGGGAATCCTATACCTATCCCTAATAATATTTTGGAAGATTTGTCCATGAATTTTGTTTTGGTCCTCTTCCTAGGAGTCAAAGAGGTAATTGTTATTGGGACGGGTGTCCTAAATCAGTTAGAGTTTTCGTAGTTTGTAATTTTTTTGTACATACAAATTATTTATTCAACAAATAACGAGTTATTTTA

mRNA sequence

GTCGGCTCACAATCATTCGTAGTAGTTAATTCTTAGGATCACGATAATACATAATAATGGTCCCGTAAGACCACAGTCAGACATAGTGTAGTGAACCCGTCTAACTCACAATTATATATAGTAGTGAACTCGTTTGACCCAGAGTGATTCATAGTAAGTGTTAAAATTAGTTTACATAAAAGTTTAGCGGCGTTGCAGCTTAGCGCCAAAACAAGGGAAGTGCAGAGAGAGATATGGATTACAGCTTAGCGGCGTTGAAGCTTCTGTGCCGGCAGCTCAAAGACGCCCGCCAAACTCCGTCCAACAACGCCGCCACTCTCGGCGGCATTCTCTTCCAACGCGCCTGGCTTCAGGGGATTTTGGTCTCCGTCGACAAACAAAATGGTAAATTGATTCTCGACGATGGCACCGGCACCGTCGACCTCTCTCTCTCTCGCGACTTCCGTCTCCGCCCTTGGAGCCTCGGGATGTATGTGATGGTTGTTGGCGCTTTTGTCGTCCGGACGAATGAACCGCCCATTATTGCGTATTTACTAATTTGGGTTGATCATGTTCGAGCTTTCTTAAATCTTATGGATATTTGGTTTGAACGAAATGCCAGCATCTTCACAGTCCACAAGATTGTTGATCTCTCAAAGTTTCCTGGTCGAGAGGCAATGTGGTACCTTGAAGTCATGGAAGCATACAAAATGTTCTATGAACCTCTGATTGAAGAATTTTCGTAACTTGTTTTGTTGACTCAACAGATGTGGAGAAATCCTTTGGATTGGACCAAAAATGTAGAAATTCTTGGTGGGGAAATTTGGGGGCAATTGCACACATCACAAAACTTGTAAAGATTTTCAGATTGTAGATGGTTTTTGGATACCACATACTTATTTTTGGGAATCCTATACCTATCCCTAATAATATTTTGGAAGATTTGTCCATGAATTTTGTTTTGGTCCTCTTCCTAGGAGTCAAAGAGGTAATTGTTATTGGGACGGGTGTCCTAAATCAGTTAGAGTTTTCGTAGTTTGTAATTTTTTTGTACATACAAATTATTTATTCAACAAATAACGAGTTATTTTA

Coding sequence (CDS)

ATGGATTACAGCTTAGCGGCGTTGAAGCTTCTGTGCCGGCAGCTCAAAGACGCCCGCCAAACTCCGTCCAACAACGCCGCCACTCTCGGCGGCATTCTCTTCCAACGCGCCTGGCTTCAGGGGATTTTGGTCTCCGTCGACAAACAAAATGGTAAATTGATTCTCGACGATGGCACCGGCACCGTCGACCTCTCTCTCTCTCGCGACTTCCGTCTCCGCCCTTGGAGCCTCGGGATGTATGTGATGGTTGTTGGCGCTTTTGTCGTCCGGACGAATGAACCGCCCATTATTGCGTATTTACTAATTTGGGTTGATCATGTTCGAGCTTTCTTAAATCTTATGGATATTTGGTTTGAACGAAATGCCAGCATCTTCACAGTCCACAAGATTGTTGATCTCTCAAAGTTTCCTGGTCGAGAGGCAATGTGGTACCTTGAAGTCATGGAAGCATACAAAATGTTCTATGAACCTCTGATTGAAGAATTTTCGTAA

Protein sequence

MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTGTVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAYLLIWVDHVRAFLNLMDIWFERNASIFTVHKIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEFS

Homology

[Close]

BLAST of Cla97C01G012960 vs. NCBI nr
Match: XP_038894076.1 (uncharacterized protein LOC120082820 [Benincasa hispida])

HSP 1 Score: 239.6 bits (610), Expect = 1.9e-59
Identity = 124/163 (76.07%), Postives = 130/163 (79.75%), Query Frame = 0


Query: 1   MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTG 60
           MDYSLAALKLLCRQLKDARQ+P+NNAATLGGILFQRAWLQG LVSVDK+N KLILDDGTG
Sbjct: 1   MDYSLAALKLLCRQLKDARQSPTNNAATLGGILFQRAWLQGNLVSVDKENAKLILDDGTG 60

Query: 61  TVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAYLLIWVDHVRAFLNLMDIWFER 120
           TV+LSLSRDFRLRPW LGMYVMVVGAFV RTNEPP+IA                      
Sbjct: 61  TVELSLSRDFRLRPWILGMYVMVVGAFVFRTNEPPVIA---------------------- 120

Query: 121 NASIFTVHKIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEFS 164
                 VHKIVDLSKFP REAMWYLEV+EAYKMFYEPLIEEFS
Sbjct: 121 ------VHKIVDLSKFPDREAMWYLEVVEAYKMFYEPLIEEFS 135

[Close]

BLAST of Cla97C01G012960 vs. NCBI nr
Match: XP_022970350.1 (uncharacterized protein LOC111469342 [Cucurbita maxima] >XP_022970351.1 uncharacterized protein LOC111469342 [Cucurbita maxima])

HSP 1 Score: 237.3 bits (604), Expect = 9.5e-59
Identity = 123/163 (75.46%), Postives = 128/163 (78.53%), Query Frame = 0


Query: 1   MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTG 60
           MDY+LAALKLLCRQL DARQ PSNNAATLGGILFQRAWLQGILV VD+ NGKLILDDGTG
Sbjct: 1   MDYNLAALKLLCRQLNDARQAPSNNAATLGGILFQRAWLQGILVFVDRDNGKLILDDGTG 60

Query: 61  TVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAYLLIWVDHVRAFLNLMDIWFER 120
           TV+LSLS DFR RPWSLGMYVMVVGA+VVRTNEP IIA                      
Sbjct: 61  TVELSLSGDFRQRPWSLGMYVMVVGAYVVRTNEPSIIA---------------------- 120

Query: 121 NASIFTVHKIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEFS 164
                 VHKIVDLSKFPGREAMWYLEVMEAYKMFYEPL+EEFS
Sbjct: 121 ------VHKIVDLSKFPGREAMWYLEVMEAYKMFYEPLVEEFS 135

[Close]

BLAST of Cla97C01G012960 vs. NCBI nr
Match: XP_022964663.1 (uncharacterized protein LOC111464675 isoform X1 [Cucurbita moschata] >XP_023519120.1 uncharacterized protein LOC111782580 isoform X1 [Cucurbita pepo subsp. pepo] >KAG6583596.1 RecQ-mediated genome instability protein 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019296.1 RecQ-mediated genome instability protein 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 236.1 bits (601), Expect = 2.1e-58
Identity = 123/163 (75.46%), Postives = 127/163 (77.91%), Query Frame = 0


Query: 1   MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTG 60
           MDYSLAALKLLCRQL DARQ PSNNAATLGGILFQRAWLQGILV VD+ NGKLILDDGTG
Sbjct: 1   MDYSLAALKLLCRQLNDARQAPSNNAATLGGILFQRAWLQGILVFVDRDNGKLILDDGTG 60

Query: 61  TVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAYLLIWVDHVRAFLNLMDIWFER 120
           TV+LSLS DFR RPWSLGMYVMVVGA+VVRTNEP IIA                      
Sbjct: 61  TVELSLSGDFRQRPWSLGMYVMVVGAYVVRTNEPSIIA---------------------- 120

Query: 121 NASIFTVHKIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEFS 164
                 VHKIVDLS FPGREAMWYLEVMEAYKMFYEPL+EEFS
Sbjct: 121 ------VHKIVDLSMFPGREAMWYLEVMEAYKMFYEPLVEEFS 135

[Close]

BLAST of Cla97C01G012960 vs. NCBI nr
Match: XP_022152884.1 (recQ-mediated genome instability protein 2 isoform X1 [Momordica charantia] >XP_022152885.1 recQ-mediated genome instability protein 2 isoform X1 [Momordica charantia])

HSP 1 Score: 225.3 bits (573), Expect = 3.7e-55
Identity = 116/162 (71.60%), Postives = 124/162 (76.54%), Query Frame = 0


Query: 1   MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTG 60
           MDYSLAALK+LC QL  AR TPS +AATLGGILFQRAWLQGILVSVDK N +L+LDDGTG
Sbjct: 1   MDYSLAALKVLCAQLTGARPTPSQHAATLGGILFQRAWLQGILVSVDKHNARLVLDDGTG 60

Query: 61  TVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAYLLIWVDHVRAFLNLMDIWFER 120
           TV+LSLSRDFRLRPW+LGMYVMVVGAFV+R NEPPII                       
Sbjct: 61  TVELSLSRDFRLRPWNLGMYVMVVGAFVIRPNEPPIIG---------------------- 120

Query: 121 NASIFTVHKIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEF 163
                 VHKIVDLS+FP REAMWYLEVMEAYKMFYEPLIEEF
Sbjct: 121 ------VHKIVDLSEFPSREAMWYLEVMEAYKMFYEPLIEEF 134

[Close]

BLAST of Cla97C01G012960 vs. NCBI nr
Match: XP_008462275.1 (PREDICTED: recQ-mediated genome instability protein 2 [Cucumis melo] >KAA0052096.1 recQ-mediated genome instability protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 224.6 bits (571), Expect = 6.4e-55
Identity = 117/162 (72.22%), Postives = 124/162 (76.54%), Query Frame = 0


Query: 1   MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTG 60
           MDYSLAALKLLCRQLKDAR TPS+  ATL GILFQRAWLQGILVSVDK+NGKLILDDGTG
Sbjct: 1   MDYSLAALKLLCRQLKDARGTPSHATATLSGILFQRAWLQGILVSVDKENGKLILDDGTG 60

Query: 61  TVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAYLLIWVDHVRAFLNLMDIWFER 120
           TV+LSL R+F LRPWSLGMYVMVVGAF+ RTNEPP I                       
Sbjct: 61  TVELSLPRNFLLRPWSLGMYVMVVGAFLFRTNEPPFI----------------------- 120

Query: 121 NASIFTVHKIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEF 163
                +VHKIVDLSK P REAMWYLEVMEAYKMFYEPL+EEF
Sbjct: 121 -----SVHKIVDLSKSPNREAMWYLEVMEAYKMFYEPLVEEF 134

[Close]

BLAST of Cla97C01G012960 vs. ExPASy TrEMBL
Match: A0A6J1I0C8 (uncharacterized protein LOC111469342 OS=Cucurbita maxima OX=3661 GN=LOC111469342 PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 4.6e-59
Identity = 123/163 (75.46%), Postives = 128/163 (78.53%), Query Frame = 0


Query: 1   MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTG 60
           MDY+LAALKLLCRQL DARQ PSNNAATLGGILFQRAWLQGILV VD+ NGKLILDDGTG
Sbjct: 1   MDYNLAALKLLCRQLNDARQAPSNNAATLGGILFQRAWLQGILVFVDRDNGKLILDDGTG 60

Query: 61  TVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAYLLIWVDHVRAFLNLMDIWFER 120
           TV+LSLS DFR RPWSLGMYVMVVGA+VVRTNEP IIA                      
Sbjct: 61  TVELSLSGDFRQRPWSLGMYVMVVGAYVVRTNEPSIIA---------------------- 120

Query: 121 NASIFTVHKIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEFS 164
                 VHKIVDLSKFPGREAMWYLEVMEAYKMFYEPL+EEFS
Sbjct: 121 ------VHKIVDLSKFPGREAMWYLEVMEAYKMFYEPLVEEFS 135

[Close]

BLAST of Cla97C01G012960 vs. ExPASy TrEMBL
Match: A0A6J1HLJ4 (uncharacterized protein LOC111464675 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464675 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 1.0e-58
Identity = 123/163 (75.46%), Postives = 127/163 (77.91%), Query Frame = 0


Query: 1   MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTG 60
           MDYSLAALKLLCRQL DARQ PSNNAATLGGILFQRAWLQGILV VD+ NGKLILDDGTG
Sbjct: 1   MDYSLAALKLLCRQLNDARQAPSNNAATLGGILFQRAWLQGILVFVDRDNGKLILDDGTG 60

Query: 61  TVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAYLLIWVDHVRAFLNLMDIWFER 120
           TV+LSLS DFR RPWSLGMYVMVVGA+VVRTNEP IIA                      
Sbjct: 61  TVELSLSGDFRQRPWSLGMYVMVVGAYVVRTNEPSIIA---------------------- 120

Query: 121 NASIFTVHKIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEFS 164
                 VHKIVDLS FPGREAMWYLEVMEAYKMFYEPL+EEFS
Sbjct: 121 ------VHKIVDLSMFPGREAMWYLEVMEAYKMFYEPLVEEFS 135

[Close]

BLAST of Cla97C01G012960 vs. ExPASy TrEMBL
Match: A0A6J1DF83 (recQ-mediated genome instability protein 2 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111020510 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.8e-55
Identity = 116/162 (71.60%), Postives = 124/162 (76.54%), Query Frame = 0


Query: 1   MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTG 60
           MDYSLAALK+LC QL  AR TPS +AATLGGILFQRAWLQGILVSVDK N +L+LDDGTG
Sbjct: 1   MDYSLAALKVLCAQLTGARPTPSQHAATLGGILFQRAWLQGILVSVDKHNARLVLDDGTG 60

Query: 61  TVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAYLLIWVDHVRAFLNLMDIWFER 120
           TV+LSLSRDFRLRPW+LGMYVMVVGAFV+R NEPPII                       
Sbjct: 61  TVELSLSRDFRLRPWNLGMYVMVVGAFVIRPNEPPIIG---------------------- 120

Query: 121 NASIFTVHKIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEF 163
                 VHKIVDLS+FP REAMWYLEVMEAYKMFYEPLIEEF
Sbjct: 121 ------VHKIVDLSEFPSREAMWYLEVMEAYKMFYEPLIEEF 134

[Close]

BLAST of Cla97C01G012960 vs. ExPASy TrEMBL
Match: A0A5A7UD07 (RecQ-mediated genome instability protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold578G00780 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 3.1e-55
Identity = 117/162 (72.22%), Postives = 124/162 (76.54%), Query Frame = 0


Query: 1   MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTG 60
           MDYSLAALKLLCRQLKDAR TPS+  ATL GILFQRAWLQGILVSVDK+NGKLILDDGTG
Sbjct: 1   MDYSLAALKLLCRQLKDARGTPSHATATLSGILFQRAWLQGILVSVDKENGKLILDDGTG 60

Query: 61  TVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAYLLIWVDHVRAFLNLMDIWFER 120
           TV+LSL R+F LRPWSLGMYVMVVGAF+ RTNEPP I                       
Sbjct: 61  TVELSLPRNFLLRPWSLGMYVMVVGAFLFRTNEPPFI----------------------- 120

Query: 121 NASIFTVHKIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEF 163
                +VHKIVDLSK P REAMWYLEVMEAYKMFYEPL+EEF
Sbjct: 121 -----SVHKIVDLSKSPNREAMWYLEVMEAYKMFYEPLVEEF 134

[Close]

BLAST of Cla97C01G012960 vs. ExPASy TrEMBL
Match: A0A1S3CGI5 (recQ-mediated genome instability protein 2 OS=Cucumis melo OX=3656 GN=LOC103500657 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 3.1e-55
Identity = 117/162 (72.22%), Postives = 124/162 (76.54%), Query Frame = 0


Query: 1   MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTG 60
           MDYSLAALKLLCRQLKDAR TPS+  ATL GILFQRAWLQGILVSVDK+NGKLILDDGTG
Sbjct: 1   MDYSLAALKLLCRQLKDARGTPSHATATLSGILFQRAWLQGILVSVDKENGKLILDDGTG 60

Query: 61  TVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAYLLIWVDHVRAFLNLMDIWFER 120
           TV+LSL R+F LRPWSLGMYVMVVGAF+ RTNEPP I                       
Sbjct: 61  TVELSLPRNFLLRPWSLGMYVMVVGAFLFRTNEPPFI----------------------- 120

Query: 121 NASIFTVHKIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEF 163
                +VHKIVDLSK P REAMWYLEVMEAYKMFYEPL+EEF
Sbjct: 121 -----SVHKIVDLSKSPNREAMWYLEVMEAYKMFYEPLVEEF 134

[Close]

BLAST of Cla97C01G012960 vs. TAIR 10
Match: AT1G08390.1 (unknown protein; Has 62 Blast hits to 62 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 34; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 174.9 bits (442), Expect = 5.4e-44
Identity = 90/165 (54.55%), Postives = 110/165 (66.67%), Query Frame = 0


Query: 1   MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGK--LILDDG 60
           MDYSLAA+K+LC QL+DA+ TPS NAA+LGG+LFQRAWLQG+LV      G   L+LDDG
Sbjct: 1   MDYSLAAVKMLCSQLRDAKPTPSQNAASLGGVLFQRAWLQGVLVPFSGGGGDNCLVLDDG 60

Query: 61  TGTVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAYLLIWVDHVRAFLNLMDIWF 120
           TG ++L L+ DF LR W  GMYVMVVG + VRT + P++                     
Sbjct: 61  TGLLELGLTNDFALRQWKSGMYVMVVGVYQVRTGQIPLL--------------------- 120

Query: 121 ERNASIFTVHKIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEFS 164
                   VHK+VDLS  P REAMWYLEVM+AY++FYEPLI+EFS
Sbjct: 121 -------KVHKMVDLSVSPDREAMWYLEVMDAYRLFYEPLIQEFS 137

The following BLAST results are available for this feature:

BLAST of Cla97C01G012960 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038894076.1	1.9e-59	76.07	uncharacterized protein LOC120082820 [Benincasa hispida]	[more]
XP_022970350.1	9.5e-59	75.46	uncharacterized protein LOC111469342 [Cucurbita maxima] >XP_022970351.1 uncharac...	[more]
XP_022964663.1	2.1e-58	75.46	uncharacterized protein LOC111464675 isoform X1 [Cucurbita moschata] >XP_0235191...	[more]
XP_022152884.1	3.7e-55	71.60	recQ-mediated genome instability protein 2 isoform X1 [Momordica charantia] >XP_...	[more]
XP_008462275.1	6.4e-55	72.22	PREDICTED: recQ-mediated genome instability protein 2 [Cucumis melo] >KAA0052096...	[more]

BLAST of Cla97C01G012960 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cla97C01G012960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I0C8	4.6e-59	75.46	uncharacterized protein LOC111469342 OS=Cucurbita maxima OX=3661 GN=LOC111469342...	[more]
A0A6J1HLJ4	1.0e-58	75.46	uncharacterized protein LOC111464675 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1DF83	1.8e-55	71.60	recQ-mediated genome instability protein 2 isoform X1 OS=Momordica charantia OX=...	[more]
A0A5A7UD07	3.1e-55	72.22	RecQ-mediated genome instability protein 2 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A1S3CGI5	3.1e-55	72.22	recQ-mediated genome instability protein 2 OS=Cucumis melo OX=3656 GN=LOC1035006...	[more]

BLAST of Cla97C01G012960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08390.1	5.4e-44	54.55	unknown protein; Has 62 Blast hits to 62 proteins in 27 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 4..154 e-value: 3.4E-28 score: 99.9
IPR032245	RecQ-mediated genome instability protein 2	PFAM	PF16100	RMI2	coord: 6..151 e-value: 6.6E-30 score: 103.7
IPR032245	RecQ-mediated genome instability protein 2	PANTHER	PTHR33962	RECQ-MEDIATED GENOME INSTABILITY PROTEIN 2 RMI2	coord: 1..162
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 12..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C01G012960.2	Cla97C01G012960.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043007	maintenance of rDNA
biological_process	GO:2000042	negative regulation of double-strand break repair via homologous recombination
biological_process	GO:0033045	regulation of sister chromatid segregation
cellular_component	GO:0005829	cytosol
cellular_component	GO:0016607	nuclear speck