Cla97C01G012960 (gene) Watermelon (97103) v2.5

Overview
NameCla97C01G012960
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionrecQ-mediated genome instability protein 2
LocationCla97Chr01: 26739990 .. 26743435 (+)
RNA-Seq ExpressionCla97C01G012960
SyntenyCla97C01G012960
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCGGCTCACAATCATTCGTAGTAGTTAATTCTTAGGATCACGATAATACATAATAATGGTCCCGTAAGACCACAGTCAGACATAGTGTAGTGAACCCGTCTAACTCACAATTATATATAGTAGTGAACTCGTTTGACCCAGAGTGATTCATAGTAAGTGTTAAAATTAGTTTACATAAAAGTTTAGCGGCGTTGCAGCTTAGCGCCAAAACAAGGGAAGTGCAGAGAGAGATATGGATTACAGCTTAGCGGCGTTGAAGCTTCTGTGCCGGCAGCTCAAAGACGCCCGCCAAACTCCGTCCAACAACGCCGCCACTCTCGGCGGCATTCTCTTCCAACGCGCCTGGCTTCAGGTCCTCTCTTTCAAATCCTTCCCTTCTCTCCCTTTCTCACAATCCTTCTATCTAATCAGAGTTCTCCCAGCAGGGGATTTTGGTCTCCGTCGACAAACAAAATGGTAAATTGATTCTCGACGATGGCACCGGCACCGTCGACCTCTCTCTCTCTCGCGACTTCCGTCTCCGCCCTTGGAGCCTCGGTATTTGCCCTAATATTTTCCGTTCTCTTTTTTTTCTGCTGCCTTTTGAGTTGGTTTCTCTCGCTAGTCGCTTTTTCTTTGTTTGTTTTATACAGGGATGTATGTGATGGTTGTTGGCGCTTTTGTCGTCCGGACGAATGAACCGCCCATTATTGCGGTGAGATTCAGATTTCATCCTCTCTTCCTTTTTGTTTCCTCGCCTTTTCTTCCATGATGACCCTCTTGTTCTTGACATATAGAGAAGAATTGATTTCCCCTGATTTTTGTTTTCTTGTAAAGAGAGAATGAAGTAAATAACCTACTAAAATATCATCAGTTTACCAATTTTGTTGTGGTGAGATCACTGACATTCTAATTACTTCGTTTGAGTTGAATGTAGTATTTACTAATTTGGGTTGATCATGTTCGAGCTTTCTTAAATCTTATGGATATTTGGTTTGAACGAAATGCCAGCATCTTCACAGTAAGAGTCGTAATATCAACTATTTTAAAGAACCCACTTCTCTTTTAACGATTACTTGCAGTATATCGTATCCTCCATTTTGTAATTATAGATTATCTACCCTCATTAATCAATGAAGGTGCTGTTTGTAATTAATCTAATTAGAACTTTTGTATTCCACTTCATCATATCAATGAATGAGATCTTTGTTTCCTAACAAATTAGAATGTTTTTGAATGCATAAGAGATTGATGCTTAGTTTTTGGATTATTCAACTGCATTTTCTTGAGACAATGGAACATTGATGATTCCACTACTTTCAAGAAGTCTATTGAACCGGTTCTTTTTAAGATGTATGCATCCCTTTAAAGATTACAGCCTAACTTCTCTTAATACGTGTTGGAGATTTTTTTGTATCAGTCAATGTCATTCAATCAATGAAATCTTTGTTGTCTACTTAGAAGAATGAAGTGTTGCTGTGGTGCTTTATGGTCATTATATGTGGCATCAGCTAGTTTTTGGATGATCGTTGTGCTAGGGAGGGTTGACAACAAAATCTGGAGTCTAGAATATTGACTTAATCTTTTGTCCTTGGTATTTTTTGGTTTCTACCTTTTGTATAGCTCGTTGTAAAGTTTCCTATGTTCTCCATATGCCATATGGTGCGATTTTTCGTGCTCTTTTTCTCTTTTTATGGGTGTAGCAGATAAGCCAACTGCCATAGAAGCATGTTGGTGGATAGTATTTTCTTCTTTTTTTTTTTTTTCTGATAATTATCAATTTCATTGATTGAATGAAATATCTAAAGAGACACAAAAGGACCCCATTTTTATATACCATTTCTCCAATTTGCAATAAGAAAATTTAAACTATGAACTTGATGGGCCGTAGATTTTTACACCAAAATAGAGCTTGGAAAACAGCTAAATCAAGAACATCCTCATATCTTTCTTTGTCTTGAAAAATTCTGTTGTTTCACCCAAATCTTCCATAAAACATCTCTTATCATACTTGACCATATTTGAGCCTTAGTAGCTTTGAAAGGGTGATCTGTGAGCAACATGTTGATCCAATCAAGAGAGGCCAAAGGATTATTCAGTATTTTCAGGTGTTTCTTTTAGTATTCATAATATTTATATTGCTATCTTTGAGATGGTTGACACTTAATTTGAAGCAAGTTTAATGAAAATCAAACTTTCAGCATTTTAGCTGTCTTTCCCTCTTTCCATTCCTTTCTTTCTACTACGCCTTCATTTGCCAATGTCCAACTTGTAGGCTGTAGCTGTGATGCTTTGTTTCATCGGCATTTAGTGTTTGATGTGCTGGTGATTAACTTTCTTAGGAGCTAGGGGCTATATTGTCCCCATAACATGACAACAGCCCAACTATTATAGATAACACTAAATTTCTTTCCATATCTAATACTTAGGAGGAAAGCAAAAGATTGTGTTCATAACTTAAGGTTATTTAATCGCATAGAGTTTTGAAGTTAGTTAATTTTATGATTTTATGTTTGTATTAGGTCCACAAGATTGTTGATCTCTCAAAGTTTCCTGGTCGAGAGGCAATGTGGTACCTTGAAGTCATGGAAGCATACAAAATGTTCTATGAACCTCTGATTGAAGAATTTTCGTAACTTGTTTTGTTGACTCAACAGGTGATGATTATTTTATTTACACGTTGATCCTGTTATGAATAATGCATCAATTTGTTGTAAGCCCACAGAATATATATATATATATTTTAATCTCTTATTACATATTTGTAAACTTCAATTGAAATTCCCACCTCATATATTGTTATGATAATCTTCTGGTCTCGTAAGATGACAACTCTAAGTTAGAGAATCCAAGTATTATCCTTTCCCTTGGTAGGCATAATTGAGAAAACATAAACAGATAAGTATAGGCAGATTAGGAGAGCCAATCTTGTTGCTTTGTGTCTCTGATGATGTCAAAAGAGATTTTTGCCATGTACTGAATTACTATAGTAATTGGGGTAATTCTTGGTTTAATGTTTTAGTTTCTTTGCAGTAATTTTAAGTACATAGTTTGTTCTAAATACCCTATAAATGGAGGTTTCCTATCATGTTATTGATAACTTTGTGATGTAGGACACATCTAATTTCAATGGAAGGCTAGATGTGGAGAAATCCTTTGGATTGGACCAAAAATGTAGAAATTCTTGGTGGGGAAATTTGGGGGCAATTGCACACATCACAAAACTTGTAAAGATTTTCAGATTGTAGATGGTTTTTGGATACCACATACTTATTTTTGGGAATCCTATACCTATCCCTAATAATATTTTGGAAGATTTGTCCATGAATTTTGTTTTGGTCCTCTTCCTAGGAGTCAAAGAGGTAATTGTTATTGGGACGGGTGTCCTAAATCAGTTAGAGTTTTCGTAGTTTGTAATTTTTTTGTACATACAAATTATTTATTCAACAAATAACGAGTTATTTTA

mRNA sequence

GTCGGCTCACAATCATTCGTAGTAGTTAATTCTTAGGATCACGATAATACATAATAATGGTCCCGTAAGACCACAGTCAGACATAGTGTAGTGAACCCGTCTAACTCACAATTATATATAGTAGTGAACTCGTTTGACCCAGAGTGATTCATAGTAAGTGTTAAAATTAGTTTACATAAAAGTTTAGCGGCGTTGCAGCTTAGCGCCAAAACAAGGGAAGTGCAGAGAGAGATATGGATTACAGCTTAGCGGCGTTGAAGCTTCTGTGCCGGCAGCTCAAAGACGCCCGCCAAACTCCGTCCAACAACGCCGCCACTCTCGGCGGCATTCTCTTCCAACGCGCCTGGCTTCAGGGGATTTTGGTCTCCGTCGACAAACAAAATGGTAAATTGATTCTCGACGATGGCACCGGCACCGTCGACCTCTCTCTCTCTCGCGACTTCCGTCTCCGCCCTTGGAGCCTCGGGATGTATGTGATGGTTGTTGGCGCTTTTGTCGTCCGGACGAATGAACCGCCCATTATTGCGTATTTACTAATTTGGGTTGATCATGTTCGAGCTTTCTTAAATCTTATGGATATTTGGTTTGAACGAAATGCCAGCATCTTCACAGTCCACAAGATTGTTGATCTCTCAAAGTTTCCTGGTCGAGAGGCAATGTGGTACCTTGAAGTCATGGAAGCATACAAAATGTTCTATGAACCTCTGATTGAAGAATTTTCGTAACTTGTTTTGTTGACTCAACAGATGTGGAGAAATCCTTTGGATTGGACCAAAAATGTAGAAATTCTTGGTGGGGAAATTTGGGGGCAATTGCACACATCACAAAACTTGTAAAGATTTTCAGATTGTAGATGGTTTTTGGATACCACATACTTATTTTTGGGAATCCTATACCTATCCCTAATAATATTTTGGAAGATTTGTCCATGAATTTTGTTTTGGTCCTCTTCCTAGGAGTCAAAGAGGTAATTGTTATTGGGACGGGTGTCCTAAATCAGTTAGAGTTTTCGTAGTTTGTAATTTTTTTGTACATACAAATTATTTATTCAACAAATAACGAGTTATTTTA

Coding sequence (CDS)

ATGGATTACAGCTTAGCGGCGTTGAAGCTTCTGTGCCGGCAGCTCAAAGACGCCCGCCAAACTCCGTCCAACAACGCCGCCACTCTCGGCGGCATTCTCTTCCAACGCGCCTGGCTTCAGGGGATTTTGGTCTCCGTCGACAAACAAAATGGTAAATTGATTCTCGACGATGGCACCGGCACCGTCGACCTCTCTCTCTCTCGCGACTTCCGTCTCCGCCCTTGGAGCCTCGGGATGTATGTGATGGTTGTTGGCGCTTTTGTCGTCCGGACGAATGAACCGCCCATTATTGCGTATTTACTAATTTGGGTTGATCATGTTCGAGCTTTCTTAAATCTTATGGATATTTGGTTTGAACGAAATGCCAGCATCTTCACAGTCCACAAGATTGTTGATCTCTCAAAGTTTCCTGGTCGAGAGGCAATGTGGTACCTTGAAGTCATGGAAGCATACAAAATGTTCTATGAACCTCTGATTGAAGAATTTTCGTAA

Protein sequence

MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTGTVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAYLLIWVDHVRAFLNLMDIWFERNASIFTVHKIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEFS
Homology
[Close]
BLAST of Cla97C01G012960 vs. NCBI nr
Match: XP_038894076.1 (uncharacterized protein LOC120082820 [Benincasa hispida])

HSP 1 Score: 239.6 bits (610), Expect = 1.9e-59
Identity = 124/163 (76.07%), Postives = 130/163 (79.75%), Query Frame = 0 

Query: 1   MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTG 60
           MDYSLAALKLLCRQLKDARQ+P+NNAATLGGILFQRAWLQG LVSVDK+N KLILDDGTG
Sbjct: 1   MDYSLAALKLLCRQLKDARQSPTNNAATLGGILFQRAWLQGNLVSVDKENAKLILDDGTG 60

Query: 61  TVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAYLLIWVDHVRAFLNLMDIWFER 120
           TV+LSLSRDFRLRPW LGMYVMVVGAFV RTNEPP+IA                      
Sbjct: 61  TVELSLSRDFRLRPWILGMYVMVVGAFVFRTNEPPVIA---------------------- 120

Query: 121 NASIFTVHKIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEFS 164
                 VHKIVDLSKFP REAMWYLEV+EAYKMFYEPLIEEFS
Sbjct: 121 ------VHKIVDLSKFPDREAMWYLEVVEAYKMFYEPLIEEFS 135

[Close]
BLAST of Cla97C01G012960 vs. NCBI nr
Match: XP_022970350.1 (uncharacterized protein LOC111469342 [Cucurbita maxima] >XP_022970351.1 uncharacterized protein LOC111469342 [Cucurbita maxima])

HSP 1 Score: 237.3 bits (604), Expect = 9.5e-59
Identity = 123/163 (75.46%), Postives = 128/163 (78.53%), Query Frame = 0 

Query: 1   MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTG 60
           MDY+LAALKLLCRQL DARQ PSNNAATLGGILFQRAWLQGILV VD+ NGKLILDDGTG
Sbjct: 1   MDYNLAALKLLCRQLNDARQAPSNNAATLGGILFQRAWLQGILVFVDRDNGKLILDDGTG 60

Query: 61  TVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAYLLIWVDHVRAFLNLMDIWFER 120
           TV+LSLS DFR RPWSLGMYVMVVGA+VVRTNEP IIA                      
Sbjct: 61  TVELSLSGDFRQRPWSLGMYVMVVGAYVVRTNEPSIIA---------------------- 120

Query: 121 NASIFTVHKIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEFS 164
                 VHKIVDLSKFPGREAMWYLEVMEAYKMFYEPL+EEFS
Sbjct: 121 ------VHKIVDLSKFPGREAMWYLEVMEAYKMFYEPLVEEFS 135

[Close]
BLAST of Cla97C01G012960 vs. NCBI nr
Match: XP_022964663.1 (uncharacterized protein LOC111464675 isoform X1 [Cucurbita moschata] >XP_023519120.1 uncharacterized protein LOC111782580 isoform X1 [Cucurbita pepo subsp. pepo] >KAG6583596.1 RecQ-mediated genome instability protein 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019296.1 RecQ-mediated genome instability protein 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 236.1 bits (601), Expect = 2.1e-58
Identity = 123/163 (75.46%), Postives = 127/163 (77.91%), Query Frame = 0 

Query: 1   MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTG 60
           MDYSLAALKLLCRQL DARQ PSNNAATLGGILFQRAWLQGILV VD+ NGKLILDDGTG
Sbjct: 1   MDYSLAALKLLCRQLNDARQAPSNNAATLGGILFQRAWLQGILVFVDRDNGKLILDDGTG 60

Query: 61  TVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAYLLIWVDHVRAFLNLMDIWFER 120
           TV+LSLS DFR RPWSLGMYVMVVGA+VVRTNEP IIA                      
Sbjct: 61  TVELSLSGDFRQRPWSLGMYVMVVGAYVVRTNEPSIIA---------------------- 120

Query: 121 NASIFTVHKIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEFS 164
                 VHKIVDLS FPGREAMWYLEVMEAYKMFYEPL+EEFS
Sbjct: 121 ------VHKIVDLSMFPGREAMWYLEVMEAYKMFYEPLVEEFS 135

[Close]
BLAST of Cla97C01G012960 vs. NCBI nr
Match: XP_022152884.1 (recQ-mediated genome instability protein 2 isoform X1 [Momordica charantia] >XP_022152885.1 recQ-mediated genome instability protein 2 isoform X1 [Momordica charantia])

HSP 1 Score: 225.3 bits (573), Expect = 3.7e-55
Identity = 116/162 (71.60%), Postives = 124/162 (76.54%), Query Frame = 0 

Query: 1   MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTG 60
           MDYSLAALK+LC QL  AR TPS +AATLGGILFQRAWLQGILVSVDK N +L+LDDGTG
Sbjct: 1   MDYSLAALKVLCAQLTGARPTPSQHAATLGGILFQRAWLQGILVSVDKHNARLVLDDGTG 60

Query: 61  TVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAYLLIWVDHVRAFLNLMDIWFER 120
           TV+LSLSRDFRLRPW+LGMYVMVVGAFV+R NEPPII                       
Sbjct: 61  TVELSLSRDFRLRPWNLGMYVMVVGAFVIRPNEPPIIG---------------------- 120

Query: 121 NASIFTVHKIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEF 163
                 VHKIVDLS+FP REAMWYLEVMEAYKMFYEPLIEEF
Sbjct: 121 ------VHKIVDLSEFPSREAMWYLEVMEAYKMFYEPLIEEF 134

[Close]
BLAST of Cla97C01G012960 vs. NCBI nr
Match: XP_008462275.1 (PREDICTED: recQ-mediated genome instability protein 2 [Cucumis melo] >KAA0052096.1 recQ-mediated genome instability protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 224.6 bits (571), Expect = 6.4e-55
Identity = 117/162 (72.22%), Postives = 124/162 (76.54%), Query Frame = 0 

Query: 1   MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTG 60
           MDYSLAALKLLCRQLKDAR TPS+  ATL GILFQRAWLQGILVSVDK+NGKLILDDGTG
Sbjct: 1   MDYSLAALKLLCRQLKDARGTPSHATATLSGILFQRAWLQGILVSVDKENGKLILDDGTG 60

Query: 61  TVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAYLLIWVDHVRAFLNLMDIWFER 120
           TV+LSL R+F LRPWSLGMYVMVVGAF+ RTNEPP I                       
Sbjct: 61  TVELSLPRNFLLRPWSLGMYVMVVGAFLFRTNEPPFI----------------------- 120

Query: 121 NASIFTVHKIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEF 163
                +VHKIVDLSK P REAMWYLEVMEAYKMFYEPL+EEF
Sbjct: 121 -----SVHKIVDLSKSPNREAMWYLEVMEAYKMFYEPLVEEF 134

[Close]
BLAST of Cla97C01G012960 vs. ExPASy TrEMBL
Match: A0A6J1I0C8 (uncharacterized protein LOC111469342 OS=Cucurbita maxima OX=3661 GN=LOC111469342 PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 4.6e-59
Identity = 123/163 (75.46%), Postives = 128/163 (78.53%), Query Frame = 0 

Query: 1   MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTG 60
           MDY+LAALKLLCRQL DARQ PSNNAATLGGILFQRAWLQGILV VD+ NGKLILDDGTG
Sbjct: 1   MDYNLAALKLLCRQLNDARQAPSNNAATLGGILFQRAWLQGILVFVDRDNGKLILDDGTG 60

Query: 61  TVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAYLLIWVDHVRAFLNLMDIWFER 120
           TV+LSLS DFR RPWSLGMYVMVVGA+VVRTNEP IIA                      
Sbjct: 61  TVELSLSGDFRQRPWSLGMYVMVVGAYVVRTNEPSIIA---------------------- 120

Query: 121 NASIFTVHKIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEFS 164
                 VHKIVDLSKFPGREAMWYLEVMEAYKMFYEPL+EEFS
Sbjct: 121 ------VHKIVDLSKFPGREAMWYLEVMEAYKMFYEPLVEEFS 135

[Close]
BLAST of Cla97C01G012960 vs. ExPASy TrEMBL
Match: A0A6J1HLJ4 (uncharacterized protein LOC111464675 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464675 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 1.0e-58
Identity = 123/163 (75.46%), Postives = 127/163 (77.91%), Query Frame = 0 

Query: 1   MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTG 60
           MDYSLAALKLLCRQL DARQ PSNNAATLGGILFQRAWLQGILV VD+ NGKLILDDGTG
Sbjct: 1   MDYSLAALKLLCRQLNDARQAPSNNAATLGGILFQRAWLQGILVFVDRDNGKLILDDGTG 60

Query: 61  TVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAYLLIWVDHVRAFLNLMDIWFER 120
           TV+LSLS DFR RPWSLGMYVMVVGA+VVRTNEP IIA                      
Sbjct: 61  TVELSLSGDFRQRPWSLGMYVMVVGAYVVRTNEPSIIA---------------------- 120

Query: 121 NASIFTVHKIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEFS 164
                 VHKIVDLS FPGREAMWYLEVMEAYKMFYEPL+EEFS
Sbjct: 121 ------VHKIVDLSMFPGREAMWYLEVMEAYKMFYEPLVEEFS 135

[Close]
BLAST of Cla97C01G012960 vs. ExPASy TrEMBL
Match: A0A6J1DF83 (recQ-mediated genome instability protein 2 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111020510 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.8e-55
Identity = 116/162 (71.60%), Postives = 124/162 (76.54%), Query Frame = 0 

Query: 1   MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTG 60
           MDYSLAALK+LC QL  AR TPS +AATLGGILFQRAWLQGILVSVDK N +L+LDDGTG
Sbjct: 1   MDYSLAALKVLCAQLTGARPTPSQHAATLGGILFQRAWLQGILVSVDKHNARLVLDDGTG 60

Query: 61  TVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAYLLIWVDHVRAFLNLMDIWFER 120
           TV+LSLSRDFRLRPW+LGMYVMVVGAFV+R NEPPII                       
Sbjct: 61  TVELSLSRDFRLRPWNLGMYVMVVGAFVIRPNEPPIIG---------------------- 120

Query: 121 NASIFTVHKIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEF 163
                 VHKIVDLS+FP REAMWYLEVMEAYKMFYEPLIEEF
Sbjct: 121 ------VHKIVDLSEFPSREAMWYLEVMEAYKMFYEPLIEEF 134

[Close]
BLAST of Cla97C01G012960 vs. ExPASy TrEMBL
Match: A0A5A7UD07 (RecQ-mediated genome instability protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold578G00780 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 3.1e-55
Identity = 117/162 (72.22%), Postives = 124/162 (76.54%), Query Frame = 0 

Query: 1   MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTG 60
           MDYSLAALKLLCRQLKDAR TPS+  ATL GILFQRAWLQGILVSVDK+NGKLILDDGTG
Sbjct: 1   MDYSLAALKLLCRQLKDARGTPSHATATLSGILFQRAWLQGILVSVDKENGKLILDDGTG 60

Query: 61  TVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAYLLIWVDHVRAFLNLMDIWFER 120
           TV+LSL R+F LRPWSLGMYVMVVGAF+ RTNEPP I                       
Sbjct: 61  TVELSLPRNFLLRPWSLGMYVMVVGAFLFRTNEPPFI----------------------- 120

Query: 121 NASIFTVHKIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEF 163
                +VHKIVDLSK P REAMWYLEVMEAYKMFYEPL+EEF
Sbjct: 121 -----SVHKIVDLSKSPNREAMWYLEVMEAYKMFYEPLVEEF 134

[Close]
BLAST of Cla97C01G012960 vs. ExPASy TrEMBL
Match: A0A1S3CGI5 (recQ-mediated genome instability protein 2 OS=Cucumis melo OX=3656 GN=LOC103500657 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 3.1e-55
Identity = 117/162 (72.22%), Postives = 124/162 (76.54%), Query Frame = 0 

Query: 1   MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGKLILDDGTG 60
           MDYSLAALKLLCRQLKDAR TPS+  ATL GILFQRAWLQGILVSVDK+NGKLILDDGTG
Sbjct: 1   MDYSLAALKLLCRQLKDARGTPSHATATLSGILFQRAWLQGILVSVDKENGKLILDDGTG 60

Query: 61  TVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAYLLIWVDHVRAFLNLMDIWFER 120
           TV+LSL R+F LRPWSLGMYVMVVGAF+ RTNEPP I                       
Sbjct: 61  TVELSLPRNFLLRPWSLGMYVMVVGAFLFRTNEPPFI----------------------- 120

Query: 121 NASIFTVHKIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEF 163
                +VHKIVDLSK P REAMWYLEVMEAYKMFYEPL+EEF
Sbjct: 121 -----SVHKIVDLSKSPNREAMWYLEVMEAYKMFYEPLVEEF 134

[Close]
BLAST of Cla97C01G012960 vs. TAIR 10
Match: AT1G08390.1 (unknown protein; Has 62 Blast hits to 62 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 34; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 174.9 bits (442), Expect = 5.4e-44
Identity = 90/165 (54.55%), Postives = 110/165 (66.67%), Query Frame = 0 

Query: 1   MDYSLAALKLLCRQLKDARQTPSNNAATLGGILFQRAWLQGILVSVDKQNGK--LILDDG 60
           MDYSLAA+K+LC QL+DA+ TPS NAA+LGG+LFQRAWLQG+LV      G   L+LDDG
Sbjct: 1   MDYSLAAVKMLCSQLRDAKPTPSQNAASLGGVLFQRAWLQGVLVPFSGGGGDNCLVLDDG 60

Query: 61  TGTVDLSLSRDFRLRPWSLGMYVMVVGAFVVRTNEPPIIAYLLIWVDHVRAFLNLMDIWF 120
           TG ++L L+ DF LR W  GMYVMVVG + VRT + P++                     
Sbjct: 61  TGLLELGLTNDFALRQWKSGMYVMVVGVYQVRTGQIPLL--------------------- 120

Query: 121 ERNASIFTVHKIVDLSKFPGREAMWYLEVMEAYKMFYEPLIEEFS 164
                   VHK+VDLS  P REAMWYLEVM+AY++FYEPLI+EFS
Sbjct: 121 -------KVHKMVDLSVSPDREAMWYLEVMDAYRLFYEPLIQEFS 137

The following BLAST results are available for this feature:
BLAST of Cla97C01G012960 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038894076.11.9e-5976.07uncharacterized protein LOC120082820 [Benincasa hispida][more]
XP_022970350.19.5e-5975.46uncharacterized protein LOC111469342 [Cucurbita maxima] >XP_022970351.1 uncharac... [more]
XP_022964663.12.1e-5875.46uncharacterized protein LOC111464675 isoform X1 [Cucurbita moschata] >XP_0235191... [more]
XP_022152884.13.7e-5571.60recQ-mediated genome instability protein 2 isoform X1 [Momordica charantia] >XP_... [more]
XP_008462275.16.4e-5572.22PREDICTED: recQ-mediated genome instability protein 2 [Cucumis melo] >KAA0052096... [more]
BLAST of Cla97C01G012960 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cla97C01G012960 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1I0C84.6e-5975.46uncharacterized protein LOC111469342 OS=Cucurbita maxima OX=3661 GN=LOC111469342... [more]
A0A6J1HLJ41.0e-5875.46uncharacterized protein LOC111464675 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1DF831.8e-5571.60recQ-mediated genome instability protein 2 isoform X1 OS=Momordica charantia OX=... [more]
A0A5A7UD073.1e-5572.22RecQ-mediated genome instability protein 2 OS=Cucumis melo var. makuwa OX=119469... [more]
A0A1S3CGI53.1e-5572.22recQ-mediated genome instability protein 2 OS=Cucumis melo OX=3656 GN=LOC1035006... [more]
BLAST of Cla97C01G012960 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G08390.15.4e-4454.55unknown protein; Has 62 Blast hits to 62 proteins in 27 species: Archae - 0; Bac... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 4..154
e-value: 3.4E-28
score: 99.9
IPR032245RecQ-mediated genome instability protein 2PFAMPF16100RMI2coord: 6..151
e-value: 6.6E-30
score: 103.7
IPR032245RecQ-mediated genome instability protein 2PANTHERPTHR33962RECQ-MEDIATED GENOME INSTABILITY PROTEIN 2 RMI2coord: 1..162
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 12..106

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C01G012960.2Cla97C01G012960.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043007 maintenance of rDNA
biological_process GO:2000042 negative regulation of double-strand break repair via homologous recombination
biological_process GO:0033045 regulation of sister chromatid segregation
cellular_component GO:0005829 cytosol
cellular_component GO:0016607 nuclear speck