ClCG11G010650 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG11G010650
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr11: 20666868 .. 20669606 (+)
RNA-Seq Expression	ClCG11G010650
Synteny	ClCG11G010650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGTCATTTTTTTTTAAAAGGTTCATGGACATAAAATCTTGTCTAATACTGAAAGTGTTAGATTAGGTTTGGAAAATGAATAAAGGCAATATAGGAGAGGAGCTTAGACATAAAACCTTGTTTTCGACCCTAGACATACGGCGTAACCTATAAAATCAAAGAGTTGTGGTTTGAATCACCTAAACTACATTAGCCATAGAAATATAGGTTTATCCTATAGATACTTCATAAAAGATCAAATATGTGTAGAATCCAATTTACCTTTGCATTATATATGAATCCAATTTATAATTTCATATTAGGCTATAACTCCTTAAAAGTAGACATGATCTTATTTAAATCTCCTATTTCTCATAATTGAAGTTTAGTAATTATTTTCATCTTTTAATTTTTTTTTCACAATTTCAAAATTATCAAAACAAATTTTTAGTTACTTGGTTATAAAACGATGAAATCTTGAGGAAAATTTTGGTTGCTAATTAGAATTTTTGTTCAAAAACCATTCCTTTGGGAGACAACTTAGAATACTTCCAATCTTTTTACTACTTGTCGACAGTGTGCACTTGCATTAGACTGGAGACTTTTCTTCAAAACGTTTTCAATTTTAGTCAAAGCGTTTTCAGTTGACCAAGTTTTTGGCGTGATTGTTGAGGAACGACATTCTTAACAAAATTCTATTTTTGCAACAAGGATTTGGATCAGATTGCAACCACAACTTCCCCTCTTTCAGAAAATCTTTTATGTTTGCTTATCTTTTTCAGGTTAAGGTTTAGTGCACGTGATAATCCACAAGATGGAAGCAAATGCCTTTTCAACAATGATCCCACACTATCCATCAATGCTCAATATGTCTATATGGGACATAACATTTCCATTTCTCCTTTCCATCAAAATTCCAACATCTTTTGTGATTATTTTGGCGAGAATCACTTGTCTGAAAATTGTTCATCTAATATAGTGAATCATTTATTTCAAGATTGTCCTTGTAACCCTATTTCTATATGATATTTAGGGCCACAAGGTAGTCAAAGTTTTTGAATCCTGATGCGCACTTTCTGTGTTAATCGCAAGTGTACGGGTCAAGTTATAATATAAGACGGTTAAGTCCGAATATCGTTCCATTAAAAATCAATTTGTGAAGGTTTAAGCTACTTAGCTATTCTAGAATTGAATCAATTTTATTTGAGGATTGGAATTTAAGTTGTGATTTTGGAAATAAAACTAAAAAAGGAAAGCAAGTAAATAAGAAACACAAGAGTCAAAGAGAGTTCTAGGGTAATGAATCCTTGTTTACTTCATGATGCAATATTCTAGAGTTCATAAATTTTATTGCAATTATTATGCTTAAGTTTAGAAACATAAATCCAAATTATTTTCTCCCAAAAACAACATTTTCTCATGCAACTCAATTGATTACTTATTTCTTGAAATCGATACAAATTACATGGCATTAAGAGTAGACTTTAGCAACTTTTATTGTTCACCTAACTATTTTCATGATAGATTAACAACAATTCTTTGTTATAGATCTAGCTAGACATACAATTATCTCAACCATACATTTAACCTTACATTCAAACATGGTCATTCAACGAGAATTTAAGCACGATAACAAAGAAAAGCATAATCATTACAACAAAACCATGAATAGTCTACATTATCAACATAACTTCATAAAAAATTCATCAAAACCTCAAAACTAAAGAGTTTAGCCACTCATAGCTTTAAGCAACATGATCATAACAATATAAACAAAGAAAGAGTGTAAAAAAAGGGAAACTATACTGAAAAGAGACTCTTGATTGAGGAAGCATCGGCAAGATATCCTTGGTCTTCATGTCGAAACTCGAATGGCACCACGACTCTCTCTCGAACTCATTTCTTTCTTCCTTGCAGCTAACTCACTTTTTGGACTCTCTAATGAACTTCCTCTCAATATTAGGGTTGCTGGAAACCCTCCAATTTATAGAGTTGGCCGCCCAAAATTCTTTCCAAAATATAGATTTTTCAAAATAGTAAAGATGGTGCCACGACGCTGTGGAATAGCGTTGCTGTGTTGACCGTCATTGAAGGATGGCGTTGCAGCGCTGTGCGTCATAATTTCCTACCCTCGGCACCATGATGTAGCGCCGCGTCAGAGCTGTTGCGCTGAAGTTGGAGGTCGCTCTCCGAAAAAAGTGCCACGACAGCGCTGTCCTGGCGCCGCGGTGCTGCCCTATTTTTGGCAGATTTGTGTTTTTCTTCTCTTTTTTTCACTAGATTTCGGCTTGGTTTTGATCATTTGGCTTTCAATTCTAGTTTTCTTTATTTTGATCTGAAAACCACTAGCAAACATGTGAAATCTAAAATAAACTTCCTTAATTTGAGAGAATAGAAAGCACTTTTCAAGCGCTTTTCAAATCCTTGTCAATATGGCCATGAAGAAGTGGAACTAGAAATGACTCAAAGAAGTGTCAGTCCAAAACATCAGCATCGAAGAACTTTTATAGGAATATATGGCAAAGAATGATGTTGTGATGCAAAGTCAAGCGACAATTCTTCGAAATTTGGAGATCCAAATTGGACAAATTGCAAATAAAATTAGAAATAACCTACAAGAAATCATGCTTAACAACACAGAGACTTTGGAACGAGTAGAAGAAGAGTAATGTGATGCAGGTACATTTGAAAATGGATTTGAATGCAAAGGGCTTCAACTCCCAAAAGAAGAAGCACTCCACCAATTGGAAGCACTGA

mRNA sequence

ATGACGTTAAGGTTTAGTGCACGTGATAATCCACAAGATGGAAGCAAATGCCTTTTCAACAATGATCCCACACTATCCATCAATGCTCAATATGAATATATGGCAAAGAATGATGTTGTGATGCAAAGTCAAGCGACAATTCTTCGAAATTTGGAGATCCAAATTGGACAAATTGCAAATAAAATTAGAAATAACCTACAAGAAATCATGCTTAACAACACAGAGACTTTGGAACGAGTACATTTGAAAATGGATTTGAATGCAAAGGGCTTCAACTCCCAAAAGAAGAAGCACTCCACCAATTGGAAGCACTGA

Coding sequence (CDS)

ATGACGTTAAGGTTTAGTGCACGTGATAATCCACAAGATGGAAGCAAATGCCTTTTCAACAATGATCCCACACTATCCATCAATGCTCAATATGAATATATGGCAAAGAATGATGTTGTGATGCAAAGTCAAGCGACAATTCTTCGAAATTTGGAGATCCAAATTGGACAAATTGCAAATAAAATTAGAAATAACCTACAAGAAATCATGCTTAACAACACAGAGACTTTGGAACGAGTACATTTGAAAATGGATTTGAATGCAAAGGGCTTCAACTCCCAAAAGAAGAAGCACTCCACCAATTGGAAGCACTGA

Protein sequence

MTLRFSARDNPQDGSKCLFNNDPTLSINAQYEYMAKNDVVMQSQATILRNLEIQIGQIANKIRNNLQEIMLNNTETLERVHLKMDLNAKGFNSQKKKHSTNWKH

Homology

[Close]

BLAST of ClCG11G010650 vs. NCBI nr
Match: XP_030502440.1 (uncharacterized protein LOC115717596 [Cannabis sativa])

HSP 1 Score: 57.4 bits (137), Expect = 8.6e-05
Identity = 34/77 (44.16%), Postives = 48/77 (62.34%), Query Frame = 0


Query: 3   LRFSARDNPQDGSKCLFNNDPTLSINAQYEYMAKNDVVMQSQATILRNLEIQIGQIANKI 62
           L FS +  PQ   +   +   +L  +   +YMAKNDVV+QSQA  LRNLEIQ+GQ+AN +
Sbjct: 292 LEFSQQPRPQQPHQPQGSQTSSLE-SLMRDYMAKNDVVIQSQAASLRNLEIQLGQLANDL 351

Query: 63  RNNLQEIMLNNTETLER 80
           +N  Q  + ++TE   R
Sbjct: 352 KNRPQGTLPSDTENPRR 367

[Close]

BLAST of ClCG11G010650 vs. NCBI nr
Match: XP_030478190.1 (uncharacterized protein LOC115695250 [Cannabis sativa])

HSP 1 Score: 57.4 bits (137), Expect = 8.6e-05
Identity = 30/58 (51.72%), Postives = 42/58 (72.41%), Query Frame = 0


Query: 23  PTLSI-NAQYEYMAKNDVVMQSQATILRNLEIQIGQIANKIRNNLQEIMLNNTETLER 80
           PT S+ N   +YMAKND ++QSQA  LRNLEIQ+GQ+AN ++N LQ  + ++T+   R
Sbjct: 317 PTSSLENLMRDYMAKNDAIIQSQAASLRNLEIQLGQLANDLKNRLQGTLPSDTKNPRR 374

[Close]

BLAST of ClCG11G010650 vs. NCBI nr
Match: XP_030490806.1 (uncharacterized protein LOC115707099 [Cannabis sativa])

HSP 1 Score: 55.8 bits (133), Expect = 2.5e-04
Identity = 33/75 (44.00%), Postives = 47/75 (62.67%), Query Frame = 0


Query: 5   FSARDNPQDGSKCLFNNDPTLSINAQYEYMAKNDVVMQSQATILRNLEIQIGQIANKIRN 64
           FS +  PQ   +   +   +L  +   +YMAKNDVV+QSQA  LRNLEIQ+GQ+AN ++N
Sbjct: 313 FSQQPRPQQPHQPQGSQTSSLE-SLMRDYMAKNDVVIQSQAASLRNLEIQLGQLANDLKN 372

Query: 65  NLQEIMLNNTETLER 80
             Q  + ++TE   R
Sbjct: 373 RPQGTLPSDTENPRR 386

[Close]

BLAST of ClCG11G010650 vs. NCBI nr
Match: XP_030498047.1 (uncharacterized protein LOC115713707 [Cannabis sativa])

HSP 1 Score: 55.1 bits (131), Expect = 4.3e-04
Identity = 31/75 (41.33%), Postives = 46/75 (61.33%), Query Frame = 0


Query: 5   FSARDNPQDGSKCLFNNDPTLSINAQYEYMAKNDVVMQSQATILRNLEIQIGQIANKIRN 64
           FS +  PQ   +   +   +L  +   +YMAKND V+QSQA  LRNLE+Q+GQ+AN ++N
Sbjct: 209 FSQQPRPQQSHQPQGSQTSSLE-SLMRDYMAKNDAVIQSQAASLRNLEVQLGQLANNLKN 268

Query: 65  NLQEIMLNNTETLER 80
             Q  + ++TE   R
Sbjct: 269 RPQGTLPSDTENPRR 282

[Close]

BLAST of ClCG11G010650 vs. NCBI nr
Match: XP_030509259.1 (uncharacterized protein LOC115723937 [Cannabis sativa])

HSP 1 Score: 53.9 bits (128), Expect = 9.5e-04
Identity = 31/75 (41.33%), Postives = 46/75 (61.33%), Query Frame = 0


Query: 5   FSARDNPQDGSKCLFNNDPTLSINAQYEYMAKNDVVMQSQATILRNLEIQIGQIANKIRN 64
           FS +  PQ   +   +   +L  +   +YMAKND V+QSQA  LRNLE+Q+GQ+AN ++N
Sbjct: 370 FSQQPRPQQPHQPQGSQTSSLE-SLMRDYMAKNDAVIQSQAASLRNLEVQLGQLANDLKN 429

Query: 65  NLQEIMLNNTETLER 80
             Q  + ++TE   R
Sbjct: 430 RPQGTLPSDTENPRR 443

The following BLAST results are available for this feature:

BLAST of ClCG11G010650 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_030502440.1	8.6e-05	44.16	uncharacterized protein LOC115717596 [Cannabis sativa]	[more]
XP_030478190.1	8.6e-05	51.72	uncharacterized protein LOC115695250 [Cannabis sativa]	[more]
XP_030490806.1	2.5e-04	44.00	uncharacterized protein LOC115707099 [Cannabis sativa]	[more]
XP_030498047.1	4.3e-04	41.33	uncharacterized protein LOC115713707 [Cannabis sativa]	[more]
XP_030509259.1	9.5e-04	41.33	uncharacterized protein LOC115723937 [Cannabis sativa]	[more]

BLAST of ClCG11G010650 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG11G010650 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG11G010650 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 48..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG11G010650.2	ClCG11G010650.2	mRNA