Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGGTTGATATGGTGGCTGGAACCGAATCCATTGTATAAAAACTTCCTAATTTTTGTATTAGGTTTGTCATTGGATTTGGAAGACGAATTGAGAGAAAAAAAATGGCAGGTGAATCGACTTTGTTCAAGTTCTTGAGCCCAGGACGCCGTTTCCAATCTACGGACATCCAAGCCGCTGCCGGCTGGGGTATCGCCGCCGCCACTACTGCTCTGTGGGTCGTTCAGGTTTTCTCCTTTCCTAAACTCATCGATCTATACTATTATTTATGGTTTTCGGAGATTTATACAGTGAATCTTTTGACTCTCTATGTTAGATTAAAGGATGCATCGATCTTCTTGAAACTTGATTCCTGATTCTGCTGTCTTACGTATACCGTCTTTATGATTTCTGTTTCTTGTCTTGGACGATTTACCTTGGCGTATTCGGATTTCTATTTTTACTCCAGCGTTAATATAGTGATTACGGGATTAGCTTTCATTTTCAGTTTGTCATTCGCAATAGAGATCTGAAAGAAATAAATTCCTATGGATTATGGTGTCTATGGATATACGTATTCCTCGTTGATTAGGAGCAGAGAGATTTATTTTTATCTGTTTTCTTCTTTTTGGTATGTCATCGAGCACAAGATGATACTCTTGCCCAGTTTTGTATGATAACTAGTAGAATTGTAGAAATATTAAGAGATGTAGTGCACTAAGATTTTTTACACTCTACATATTTCTAGAACTCAAGGATACAACCTTTTGAACAAAGGTAAGGCTATTTAGACATTGAATCTCACAAGTTTCTAAAAATTTGTAGTAGTTCATTATATATGGCTCCACTTCCTGCCGTCCTCATGATCACACTCTGGTTCCACATTGTAAGTTTGTTTTACTTCCAATTCCAATCCAAGTTCAGTTTCAGTATGGAGCTTTTAGCCCCTCACAGAGACCTAAGGCCTTACCTGAGCGAAAGTTTTGATCCTCTACCCTTTCTGTTTATACAGTCTTTTCCAAATTCCATAATTGTATCACTATAGTTGGCTTCATTTGTTAGTTTTAAACCATTAGTTAACTTTCTACCGGTACCTGCTGCAAAATTTCCATCGACGCCACCAACCAAAAGCCTAATCCTAACTGCCATCAATACTCTCAAACAGTCCTGAGATAATGTCAAAAACTTTGTTGTTTGCACTTTTTACCTGAGGTTCCGTCCATCAGGCTTTCCATCAAAACTCACAACTGATATCTTGGAACTCCTAGGATCTGGCATTCATTTTGCAGTGAAGTATTGTTATGCTCAAAACATATCCTCCTCTCATTGCAACTATTTATGGAAAGACCTCTCACAATAGTCAATGTTTCTTTCTAGTACAAGCCACTCCATAGAGTTACGACCACATTGCAATTCTACTATTACCAAATTCGGATTTGATCTCCGTTCTATCAAACACGTTCTTTGCACTTCCTTCAAGGAATCCCCAAAATTGGAGTGCTCTAATGCACAAGCTAATGGATCCCATGTAATTTTATTTAACAAATTTGATTGATGGTATGGGGTTTTATTAGCTCTATTCCTCTTTCTCTGCTCCTCATGTTCTTTTTCTATATGCTTAGTAAACGTTCTCAACTCCCCCTCCTTAACTAACAATAACTACATCGTTGCCTCTCCTTTTCTACTGATTAGGTTCACTGCTGTTTTTTGTTCCTTTCCCAACTAAACCATAATGGACTTGTTTTCTTTGCTGTGTGTTTTTTCCGATTTATTGCTTGAGAAAAACTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCATCTACAAATTTTTGGGTTCCAGATGGGCTCCATCACCTTTGATAGGGAGAATGCATTATCCTATCTTGGTTGGGTTTTTATTAATTCTTATTTTGTGAAGTTTTCTGTATTGCATTGCAAATAAAGGGATATAGATTTGATTATGTTCATTTTCCCTGATTGTTTCGCGAGGCTGCAAACCAACGTAAATTGGTTTGAGTTTTCAAATATTCATTTCTTTGCCTAAACAGTTTGTTCCAATTAATTTTGTACTATATGTTATTTTCTTGGTTAACTAAACGGTGGCCTTTTGTGTTATACTTGTAGAAAATTAACTCTATACAATCTTTCCTCTTTTTGAGGCTCCTCTGTGGTTCACATTAATTATAATGTTTAAACGAATCTAACCATTCCTTTTTCTCTTGTGAACTCTGTGCAGCCATTTGACTGGATCAAGAAGACGTTCTTCGAGAAGCCAGAAGAGGCATGAATTGTTATTTGTGAAGGCTCACCCCAGTTTTTGTTAATAAGTATCAGTTGATTGCCGCAAATGGGTAAACTGCAGAGTTCATTGGAATAACATGTTTTGTAATAGACTCTGTTTTGATTAAATTGAGTTCTTCAACTCTCTCTAACTTTGGAAATTTTATTGTCGAAATTTAAGGTACGTTTGATAAACATTTGATTTTGTATTTTTGGTTTTTGAAAACTAAACTTATAC
mRNA sequence
CGGTTGATATGGTGGCTGGAACCGAATCCATTGTATAAAAACTTCCTAATTTTTGTATTAGGTTTGTCATTGGATTTGGAAGACGAATTGAGAGAAAAAAAATGGCAGGTGAATCGACTTTGTTCAAGTTCTTGAGCCCAGGACGCCGTTTCCAATCTACGGACATCCAAGCCGCTGCCGGCTGGGGTATCGCCGCCGCCACTACTGCTCTGTGGGTCGTTCAGTTCATTATATATGGCTCCACTTCCTGCCGTCCTCATGATCACACTCTGGTTCCACATTGCTTTCCATCAAAACTCACAACTGATATCTTGGAACTCCTAGGATCTGGCATTCATTTTGCAGTGAACCATTTGACTGGATCAAGAAGACGTTCTTCGAGAAGCCAGAAGAGGCATGAATTGTTATTTGTGAAGGCTCACCCCAGTTTTTGTTAATAAGTATCAGTTGATTGCCGCAAATGGGTAAACTGCAGAGTTCATTGGAATAACATGTTTTGTAATAGACTCTGTTTTGATTAAATTGAGTTCTTCAACTCTCTCTAACTTTGGAAATTTTATTGTCGAAATTTAAGGTACGTTTGATAAACATTTGATTTTGTATTTTTGGTTTTTGAAAACTAAACTTATAC
Coding sequence (CDS)
ATGGCAGGTGAATCGACTTTGTTCAAGTTCTTGAGCCCAGGACGCCGTTTCCAATCTACGGACATCCAAGCCGCTGCCGGCTGGGGTATCGCCGCCGCCACTACTGCTCTGTGGGTCGTTCAGTTCATTATATATGGCTCCACTTCCTGCCGTCCTCATGATCACACTCTGGTTCCACATTGCTTTCCATCAAAACTCACAACTGATATCTTGGAACTCCTAGGATCTGGCATTCATTTTGCAGTGAACCATTTGACTGGATCAAGAAGACGTTCTTCGAGAAGCCAGAAGAGGCATGAATTGTTATTTGTGAAGGCTCACCCCAGTTTTTGTTAA
Protein sequence
MAGESTLFKFLSPGRRFQSTDIQAAAGWGIAAATTALWVVQFIIYGSTSCRPHDHTLVPHCFPSKLTTDILELLGSGIHFAVNHLTGSRRRSSRSQKRHELLFVKAHPSFC
Homology
BLAST of ClCG11G005640 vs. NCBI nr
Match:
KAG7016049.1 (hypothetical protein SDJN02_21153 [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 84.7 bits (208), Expect = 5.4e-13
Identity = 40/41 (97.56%), Postives = 41/41 (100.00%), Query Frame = 0
Query: 1 MAGESTLFKFLSPGRRFQSTDIQAAAGWGIAAATTALWVVQ 42
MAGESTLFKFLSPGRRFQSTDIQAAAGWG+AAATTALWVVQ
Sbjct: 1 MAGESTLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVVQ 41
BLAST of ClCG11G005640 vs. NCBI nr
Match:
KAG6578485.1 (hypothetical protein SDJN03_22933, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 84.7 bits (208), Expect = 5.4e-13
Identity = 40/41 (97.56%), Postives = 41/41 (100.00%), Query Frame = 0
Query: 1 MAGESTLFKFLSPGRRFQSTDIQAAAGWGIAAATTALWVVQ 42
MAGESTLFKFLSPGRRFQSTDIQAAAGWG+AAATTALWVVQ
Sbjct: 117 MAGESTLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVVQ 157
BLAST of ClCG11G005640 vs. NCBI nr
Match:
KGN45840.1 (hypothetical protein Csa_005761 [Cucumis sativus])
HSP 1 Score: 83.6 bits (205), Expect = 1.2e-12
Identity = 38/48 (79.17%), Postives = 43/48 (89.58%), Query Frame = 0
Query: 1 MAGESTLFKFLSPGRRFQSTDIQAAAGWGIAAATTALWVVQFIIYGST 49
MAGES+LFKFLSPGRRFQSTDIQAAAGWG+AAATTALWV+Q + +
Sbjct: 1 MAGESSLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVIQVFTFSKS 48
BLAST of ClCG11G005640 vs. NCBI nr
Match:
KAA0051979.1 (Ubiquinol-cytochrome c reductase complex 6.7 kDa [Cucumis melo var. makuwa] >TYK04578.1 Ubiquinol-cytochrome c reductase complex 6.7 kDa [Cucumis melo var. makuwa])
HSP 1 Score: 82.8 bits (203), Expect = 2.0e-12
Identity = 38/41 (92.68%), Postives = 41/41 (100.00%), Query Frame = 0
Query: 1 MAGESTLFKFLSPGRRFQSTDIQAAAGWGIAAATTALWVVQ 42
MAGES+LFKFLSPGRRFQSTDIQAAAGWG+AAATTALWV+Q
Sbjct: 1 MAGESSLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVIQ 41
BLAST of ClCG11G005640 vs. NCBI nr
Match:
KAF3433259.1 (hypothetical protein FNV43_RR24361 [Rhamnella rubrinervis])
HSP 1 Score: 65.9 bits (159), Expect = 2.6e-07
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 0
Query: 1 MAGESTLFKFLSPGRRFQSTDIQAAAGWGIAAATTALWVVQ 42
MAGE+ LFKFL+P RR QSTDIQAA WG+AA TTALW+VQ
Sbjct: 23 MAGEAGLFKFLNPRRRPQSTDIQAAGMWGVAATTTALWIVQ 63
BLAST of ClCG11G005640 vs. ExPASy Swiss-Prot
Match:
P48505 (Ubiquinol-cytochrome c reductase complex 6.7 kDa protein OS=Solanum tuberosum OX=4113 PE=1 SV=2)
HSP 1 Score: 57.8 bits (138), Expect = 9.2e-08
Identity = 28/40 (70.00%), Postives = 31/40 (77.50%), Query Frame = 0
Query: 2 AGESTLFKFLSPGRRFQSTDIQAAAGWGIAAATTALWVVQ 42
A + LFKFL P R QSTDIQAAAGWG+AA T ALWV+Q
Sbjct: 6 AAGNGLFKFLRPKLRPQSTDIQAAAGWGVAAVTGALWVIQ 45
BLAST of ClCG11G005640 vs. ExPASy Swiss-Prot
Match:
Q94K78 (Cytochrome b-c1 complex subunit 10, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=UCRY PE=1 SV=1)
HSP 1 Score: 48.5 bits (114), Expect = 5.6e-05
Identity = 25/41 (60.98%), Postives = 29/41 (70.73%), Query Frame = 0
Query: 1 MAGESTLFKFLSPGRRFQSTDIQAAAGWGIAAATTALWVVQ 42
MAG S L + P + Q+ DIQAAAGWGIAAA A+WVVQ
Sbjct: 1 MAGTSGLLNAVKP--KIQTIDIQAAAGWGIAAAAGAIWVVQ 39
BLAST of ClCG11G005640 vs. ExPASy TrEMBL
Match:
A0A0A0K7V0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014600 PE=4 SV=1)
HSP 1 Score: 83.6 bits (205), Expect = 5.8e-13
Identity = 38/48 (79.17%), Postives = 43/48 (89.58%), Query Frame = 0
Query: 1 MAGESTLFKFLSPGRRFQSTDIQAAAGWGIAAATTALWVVQFIIYGST 49
MAGES+LFKFLSPGRRFQSTDIQAAAGWG+AAATTALWV+Q + +
Sbjct: 1 MAGESSLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVIQVFTFSKS 48
BLAST of ClCG11G005640 vs. ExPASy TrEMBL
Match:
A0A5D3BZX3 (Ubiquinol-cytochrome c reductase complex 6.7 kDa OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G002150 PE=4 SV=1)
HSP 1 Score: 82.8 bits (203), Expect = 9.9e-13
Identity = 38/41 (92.68%), Postives = 41/41 (100.00%), Query Frame = 0
Query: 1 MAGESTLFKFLSPGRRFQSTDIQAAAGWGIAAATTALWVVQ 42
MAGES+LFKFLSPGRRFQSTDIQAAAGWG+AAATTALWV+Q
Sbjct: 1 MAGESSLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVIQ 41
BLAST of ClCG11G005640 vs. ExPASy TrEMBL
Match:
A9PAG4 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_019G059500 PE=2 SV=1)
HSP 1 Score: 65.1 bits (157), Expect = 2.1e-07
Identity = 30/41 (73.17%), Postives = 34/41 (82.93%), Query Frame = 0
Query: 1 MAGESTLFKFLSPGRRFQSTDIQAAAGWGIAAATTALWVVQ 42
MAGE+ +FKFLSP R QSTDIQ AA WG+AA TTALW+VQ
Sbjct: 1 MAGENAMFKFLSPRLRLQSTDIQTAAFWGVAAGTTALWLVQ 41
BLAST of ClCG11G005640 vs. ExPASy TrEMBL
Match:
A0A3Q7FPE4 (Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1)
HSP 1 Score: 62.4 bits (150), Expect = 1.4e-06
Identity = 30/40 (75.00%), Postives = 33/40 (82.50%), Query Frame = 0
Query: 2 AGESTLFKFLSPGRRFQSTDIQAAAGWGIAAATTALWVVQ 42
A + LFKFLSP RR QSTDIQAAAGWG+AA T ALWV+Q
Sbjct: 19 AAGNGLFKFLSPKRRPQSTDIQAAAGWGVAAVTGALWVIQ 58
BLAST of ClCG11G005640 vs. ExPASy TrEMBL
Match:
A0A2P2J2E2 (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)
HSP 1 Score: 62.4 bits (150), Expect = 1.4e-06
Identity = 30/41 (73.17%), Postives = 34/41 (82.93%), Query Frame = 0
Query: 1 MAGESTLFKFLSPGRRFQSTDIQAAAGWGIAAATTALWVVQ 42
MAGE+ L KFLSP R QSTDIQAAA WG+AA TTALW++Q
Sbjct: 1 MAGEAALSKFLSPRLRPQSTDIQAAAFWGVAATTTALWLIQ 41
BLAST of ClCG11G005640 vs. TAIR 10
Match:
AT2G40765.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, mitochondrial respiratory chain complex III; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 32 Blast hits to 32 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 48.5 bits (114), Expect = 4.0e-06
Identity = 25/41 (60.98%), Postives = 29/41 (70.73%), Query Frame = 0
Query: 1 MAGESTLFKFLSPGRRFQSTDIQAAAGWGIAAATTALWVVQ 42
MAG S L + P + Q+ DIQAAAGWGIAAA A+WVVQ
Sbjct: 1 MAGTSGLLNAVKP--KIQTIDIQAAAGWGIAAAAGAIWVVQ 39
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAG7016049.1 | 5.4e-13 | 97.56 | hypothetical protein SDJN02_21153 [Cucurbita argyrosperma subsp. argyrosperma] | [more] |
| KAG6578485.1 | 5.4e-13 | 97.56 | hypothetical protein SDJN03_22933, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KGN45840.1 | 1.2e-12 | 79.17 | hypothetical protein Csa_005761 [Cucumis sativus] | [more] |
| KAA0051979.1 | 2.0e-12 | 92.68 | Ubiquinol-cytochrome c reductase complex 6.7 kDa [Cucumis melo var. makuwa] >TYK... | [more] |
| KAF3433259.1 | 2.6e-07 | 75.61 | hypothetical protein FNV43_RR24361 [Rhamnella rubrinervis] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| P48505 | 9.2e-08 | 70.00 | Ubiquinol-cytochrome c reductase complex 6.7 kDa protein OS=Solanum tuberosum OX... | [more] |
| Q94K78 | 5.6e-05 | 60.98 | Cytochrome b-c1 complex subunit 10, mitochondrial OS=Arabidopsis thaliana OX=370... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0K7V0 | 5.8e-13 | 79.17 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014600 PE=4 SV=1 | [more] |
| A0A5D3BZX3 | 9.9e-13 | 92.68 | Ubiquinol-cytochrome c reductase complex 6.7 kDa OS=Cucumis melo var. makuwa OX=... | [more] |
| A9PAG4 | 2.1e-07 | 73.17 | Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_019G059500 PE=2 ... | [more] |
| A0A3Q7FPE4 | 1.4e-06 | 75.00 | Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1 | [more] |
| A0A2P2J2E2 | 1.4e-06 | 73.17 | Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT2G40765.1 | 4.0e-06 | 60.98 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... | [more] |
