Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGGCCGTTGTTCGTTTTGGGGAGTGGCGGTGGTGGCGATGATGTTAACAACCATCCTGTGTTCCAGCCATTGCTGCAGAGGTTCGGTTCTGACCAAGGCTAACGCCACCTACGGCGAGGTGACGGCGGAGTTGCTGATCCAGAGTGATATAACTCGGTATCTCATGTTTAATGAAGCCGAAGTCAAGACAGGTAATACCCCGAACCCAAACGTCAAAGCTTGTGACAACGGCGCCGGAAACCCGATGGGCGCCTGCGGTGGCAGCGCCAATAATAAAAAGCATTGCAACGCATACGACGGCGCCGCCGCTTGCAAATAA
mRNA sequence
ATGGGTGGCCGTTGTTCGTTTTGGGGAGTGGCGGTGGTGGCGATGATGTTAACAACCATCCTGTGTTCCAGCCATTGCTGCAGAGGTTCGGTTCTGACCAAGGCTAACGCCACCTACGGCGAGGTGACGGCGGAGTTGCTGATCCAGAGTGATATAACTCGGTATCTCATGTTTAATGAAGCCGAAGTCAAGACAGGTAATACCCCGAACCCAAACGTCAAAGCTTGTGACAACGGCGCCGGAAACCCGATGGGCGCCTGCGGTGGCAGCGCCAATAATAAAAAGCATTGCAACGCATACGACGGCGCCGCCGCTTGCAAATAA
Coding sequence (CDS)
ATGGGTGGCCGTTGTTCGTTTTGGGGAGTGGCGGTGGTGGCGATGATGTTAACAACCATCCTGTGTTCCAGCCATTGCTGCAGAGGTTCGGTTCTGACCAAGGCTAACGCCACCTACGGCGAGGTGACGGCGGAGTTGCTGATCCAGAGTGATATAACTCGGTATCTCATGTTTAATGAAGCCGAAGTCAAGACAGGTAATACCCCGAACCCAAACGTCAAAGCTTGTGACAACGGCGCCGGAAACCCGATGGGCGCCTGCGGTGGCAGCGCCAATAATAAAAAGCATTGCAACGCATACGACGGCGCCGCCGCTTGCAAATAA
Protein sequence
MGGRCSFWGVAVVAMMLTTILCSSHCCRGSVLTKANATYGEVTAELLIQSDITRYLMFNEAEVKTGNTPNPNVKACDNGAGNPMGACGGSANNKKHCNAYDGAAACK
Homology
BLAST of ClCG11G004860 vs. NCBI nr
Match:
KAG6578548.1 (hypothetical protein SDJN03_22996, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 136.3 bits (342), Expect = 1.5e-28
Identity = 67/106 (63.21%), Postives = 79/106 (74.53%), Query Frame = 0
Query: 1 MGGRCSFWGVAVVAMMLTTILCSSHCCRGSVLTKANATYGEVTAELLIQSDITRYLMFNE 60
MGGRCSFWGVAV A+M+T ILCSS+ R S L +ANATYGEV ELL++ +I R+L F
Sbjct: 1 MGGRCSFWGVAVAALMVTIILCSSNSSRASSLGRANATYGEVEVELLVRREIARFLNFKN 60
Query: 61 AEVKTGNTPNPNVKACDNGAGNPMGACGGSANNKKHCNAYDGAAAC 107
+V T T NP VK+C NG GNPMG C GS NKKHCN+Y GA+AC
Sbjct: 61 MKVYTDKTQNPFVKSCGNGPGNPMGDCSGSPTNKKHCNSYAGASAC 106
BLAST of ClCG11G004860 vs. NCBI nr
Match:
KAA0039430.1 (hypothetical protein E6C27_scaffold64G002370 [Cucumis melo var. makuwa] >TYK00619.1 hypothetical protein E5676_scaffold169G002390 [Cucumis melo var. makuwa])
HSP 1 Score: 122.5 bits (306), Expect = 2.2e-24
Identity = 69/108 (63.89%), Postives = 73/108 (67.59%), Query Frame = 0
Query: 1 MGGRCSFWGVA-VVAMMLTTILCSSHCCRGSVLTKANATYGEV-TAELLIQSDITRYLMF 60
MG R SF G+ VV MML TI CSSH CRGSVL KANATY V T ELLI DI RYLMF
Sbjct: 1 MGSRSSFSGLTMVVVMMLITIFCSSHSCRGSVLIKANATYDVVMTEELLIYPDINRYLMF 60
Query: 61 NEAEVKTGNTPNPNVKACDNGAGNPMGACGGSANNKKHCNAYDGAAAC 107
N + KTG T + NV AC NGAGN C GS +NKK CNAY G AC
Sbjct: 61 NGVDAKTGKTNDKNVVACGNGAGNSFAGCSGSTSNKKKCNAYKGPKAC 108
BLAST of ClCG11G004860 vs. NCBI nr
Match:
KGN52519.1 (hypothetical protein Csa_008872 [Cucumis sativus])
HSP 1 Score: 114.4 bits (285), Expect = 6.1e-22
Identity = 63/109 (57.80%), Postives = 74/109 (67.89%), Query Frame = 0
Query: 1 MGGRCSFWG--VAVVAMMLTTILCSSHCCRGSVLTKANATYGEV-TAELLIQSDITRYLM 60
MGGR SF G + VV +M TIL SS+ CRGS+L KANAT G V T EL+I+ DITRYL+
Sbjct: 1 MGGRSSFCGLTMVVVVVMSITILSSSYSCRGSILMKANATLGSVMTTELIIKHDITRYLI 60
Query: 61 FNEAEVKTGNTPNPNVKACDNGAGNPMGACGGSANNKKHCNAYDGAAAC 107
F A TG T +PN+ C NGAGN CGG+ANN + CNAY G AC
Sbjct: 61 FKGATAVTGATADPNIVTCGNGAGNTFSGCGGNANNTQQCNAYQGPNAC 109
BLAST of ClCG11G004860 vs. NCBI nr
Match:
KGN52518.1 (hypothetical protein Csa_007870 [Cucumis sativus])
HSP 1 Score: 111.7 bits (278), Expect = 4.0e-21
Identity = 60/98 (61.22%), Postives = 68/98 (69.39%), Query Frame = 0
Query: 10 VAVVAMMLTTILCSSHCCRGSVLTKANATYGEV-TAELLIQSDITRYLMFNEAEVKTGNT 69
+ VV MML TIL SSH CR SVL KANATYG V TAELLI D+TRYLM++ A+ KTG T
Sbjct: 16 MVVVVMMLITILYSSHTCRASVLIKANATYGGVMTAELLIYPDVTRYLMYDHADSKTGKT 75
Query: 70 PNPNVKACDNGAGNPMGACGGSANNKKHCNAYDGAAAC 107
+ V CDNG GN CGGS++NKK CNAY C
Sbjct: 76 KDKEVVVCDNGKGNSFSGCGGSSSNKKQCNAYGDPKDC 113
BLAST of ClCG11G004860 vs. NCBI nr
Match:
KAA0039429.1 (hypothetical protein E6C27_scaffold64G002360 [Cucumis melo var. makuwa] >TYK00618.1 hypothetical protein E5676_scaffold169G002380 [Cucumis melo var. makuwa])
HSP 1 Score: 109.4 bits (272), Expect = 2.0e-20
Identity = 61/109 (55.96%), Postives = 74/109 (67.89%), Query Frame = 0
Query: 1 MGGRCSFWG--VAVVAMMLTTILCSSHCCRGSVLTKANATYGEV-TAELLIQSDITRYLM 60
MGGR SF G + VV +M TIL SS+ CRGSVL KANATYG V T E++I DITR+LM
Sbjct: 1 MGGRSSFCGLTMVVVVVMSITILSSSYSCRGSVLMKANATYGGVSTTEMIIYHDITRFLM 60
Query: 61 FNEAEVKTGNTPNPNVKACDNGAGNPMGACGGSANNKKHCNAYDGAAAC 107
++ TGNT PN+ C+NG GN G CGG+ANN++ CN YD C
Sbjct: 61 PPGSKPVTGNTGEPNIVPCNNGPGNQFGQCGGNANNQQQCNRYDTTKPC 109
BLAST of ClCG11G004860 vs. ExPASy TrEMBL
Match:
A0A5D3BR80 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G002390 PE=4 SV=1)
HSP 1 Score: 122.5 bits (306), Expect = 1.1e-24
Identity = 69/108 (63.89%), Postives = 73/108 (67.59%), Query Frame = 0
Query: 1 MGGRCSFWGVA-VVAMMLTTILCSSHCCRGSVLTKANATYGEV-TAELLIQSDITRYLMF 60
MG R SF G+ VV MML TI CSSH CRGSVL KANATY V T ELLI DI RYLMF
Sbjct: 1 MGSRSSFSGLTMVVVMMLITIFCSSHSCRGSVLIKANATYDVVMTEELLIYPDINRYLMF 60
Query: 61 NEAEVKTGNTPNPNVKACDNGAGNPMGACGGSANNKKHCNAYDGAAAC 107
N + KTG T + NV AC NGAGN C GS +NKK CNAY G AC
Sbjct: 61 NGVDAKTGKTNDKNVVACGNGAGNSFAGCSGSTSNKKKCNAYKGPKAC 108
BLAST of ClCG11G004860 vs. ExPASy TrEMBL
Match:
A0A0A0KUG7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G640530 PE=4 SV=1)
HSP 1 Score: 114.4 bits (285), Expect = 3.0e-22
Identity = 63/109 (57.80%), Postives = 74/109 (67.89%), Query Frame = 0
Query: 1 MGGRCSFWG--VAVVAMMLTTILCSSHCCRGSVLTKANATYGEV-TAELLIQSDITRYLM 60
MGGR SF G + VV +M TIL SS+ CRGS+L KANAT G V T EL+I+ DITRYL+
Sbjct: 1 MGGRSSFCGLTMVVVVVMSITILSSSYSCRGSILMKANATLGSVMTTELIIKHDITRYLI 60
Query: 61 FNEAEVKTGNTPNPNVKACDNGAGNPMGACGGSANNKKHCNAYDGAAAC 107
F A TG T +PN+ C NGAGN CGG+ANN + CNAY G AC
Sbjct: 61 FKGATAVTGATADPNIVTCGNGAGNTFSGCGGNANNTQQCNAYQGPNAC 109
BLAST of ClCG11G004860 vs. ExPASy TrEMBL
Match:
A0A0A0KSJ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G640520 PE=4 SV=1)
HSP 1 Score: 111.7 bits (278), Expect = 1.9e-21
Identity = 60/98 (61.22%), Postives = 68/98 (69.39%), Query Frame = 0
Query: 10 VAVVAMMLTTILCSSHCCRGSVLTKANATYGEV-TAELLIQSDITRYLMFNEAEVKTGNT 69
+ VV MML TIL SSH CR SVL KANATYG V TAELLI D+TRYLM++ A+ KTG T
Sbjct: 16 MVVVVMMLITILYSSHTCRASVLIKANATYGGVMTAELLIYPDVTRYLMYDHADSKTGKT 75
Query: 70 PNPNVKACDNGAGNPMGACGGSANNKKHCNAYDGAAAC 107
+ V CDNG GN CGGS++NKK CNAY C
Sbjct: 76 KDKEVVVCDNGKGNSFSGCGGSSSNKKQCNAYGDPKDC 113
BLAST of ClCG11G004860 vs. ExPASy TrEMBL
Match:
A0A5D3BNE4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G002380 PE=4 SV=1)
HSP 1 Score: 109.4 bits (272), Expect = 9.5e-21
Identity = 61/109 (55.96%), Postives = 74/109 (67.89%), Query Frame = 0
Query: 1 MGGRCSFWG--VAVVAMMLTTILCSSHCCRGSVLTKANATYGEV-TAELLIQSDITRYLM 60
MGGR SF G + VV +M TIL SS+ CRGSVL KANATYG V T E++I DITR+LM
Sbjct: 1 MGGRSSFCGLTMVVVVVMSITILSSSYSCRGSVLMKANATYGGVSTTEMIIYHDITRFLM 60
Query: 61 FNEAEVKTGNTPNPNVKACDNGAGNPMGACGGSANNKKHCNAYDGAAAC 107
++ TGNT PN+ C+NG GN G CGG+ANN++ CN YD C
Sbjct: 61 PPGSKPVTGNTGEPNIVPCNNGPGNQFGQCGGNANNQQQCNRYDTTKPC 109
BLAST of ClCG11G004860 vs. ExPASy TrEMBL
Match:
A0A0A0KVT8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G640510 PE=4 SV=1)
HSP 1 Score: 105.1 bits (261), Expect = 1.8e-19
Identity = 62/108 (57.41%), Postives = 72/108 (66.67%), Query Frame = 0
Query: 1 MGGRCSFWGVA-VVAMMLTTILCSSHCCRGSVLTKANATYGEV-TAELLIQSDITRYLMF 60
MG R SF G+ VV +ML TIL SSH CRGSVL KANATY V T EL+I DI R+LM
Sbjct: 1 MGSRSSFSGLTMVVVVMLITILFSSHSCRGSVLIKANATYDVVMTEELMIYGDINRHLMP 60
Query: 61 NEAEVKTGNTPNPNVKACDNGAGNPMGACGGSANNKKHCNAYDGAAAC 107
+ ++ KTG T NV AC NGAGN CGGS +N+ C+AY G AC
Sbjct: 61 SGSKAKTGKTHERNVVACGNGAGNTYAVCGGSISNENKCDAYKGPNAC 108
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAG6578548.1 | 1.5e-28 | 63.21 | hypothetical protein SDJN03_22996, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KAA0039430.1 | 2.2e-24 | 63.89 | hypothetical protein E6C27_scaffold64G002370 [Cucumis melo var. makuwa] >TYK0061... | [more] |
| KGN52519.1 | 6.1e-22 | 57.80 | hypothetical protein Csa_008872 [Cucumis sativus] | [more] |
| KGN52518.1 | 4.0e-21 | 61.22 | hypothetical protein Csa_007870 [Cucumis sativus] | [more] |
| KAA0039429.1 | 2.0e-20 | 55.96 | hypothetical protein E6C27_scaffold64G002360 [Cucumis melo var. makuwa] >TYK0061... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3BR80 | 1.1e-24 | 63.89 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A0A0KUG7 | 3.0e-22 | 57.80 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G640530 PE=4 SV=1 | [more] |
| A0A0A0KSJ4 | 1.9e-21 | 61.22 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G640520 PE=4 SV=1 | [more] |
| A0A5D3BNE4 | 9.5e-21 | 55.96 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A0A0KVT8 | 1.8e-19 | 57.41 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G640510 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
