Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGACCGATTTCACAGAAGAACTGAGCGAAAACTCTCTTCCAGGACCAAAACCAACCCTTCAGCTAGATTTAGAATTCGCAGCCGCTTGTAATGACCAACTAGATCAACACCGAAATCGCCGTTTCTCCGCTACAAAGGAAGGCGCTGAATGTCAACGTCCCGCCGTGGGGAGAATACCGGAGTATCATGCTTCTTTCTTTGATATTTTCAAGAAGATCCGTCGTGCGGAGCGGTTCGGGATTCCCGTACATTTATCGGAGGCGGAAAAGAGATTCTCTCGAGCTGAGAGGTGATTTTGCGGTTTTATGGCATTGTTTGTATTTTCTTATGAATTTGTTGTGTGTTCGTATGTCTAGGCTTCGAGGAATGGGAGGAGCGTAGAATTTTGTTGTTGGATTTGATGCCGTTTCATGGATCGATAGTGAATTTTCAACTGATTAATGCATTTATTCAAGAACAAGATATTCTATATTCTCGTTTTTCAAAGTGGATGCAGAAGATAGTTCTGAACTTCTTGTTATTTGATATTCTTTTCTTTATTTTCTTTTGTTGTGTCTTTGTACAATTTTAGAGCTGCCATTTCGTTTGTGAAAATTTTGCAGGTTCGGCACTGATTCAGTGTGTGGACCAGATGAAATAGCTAAAGCAGAGGAACTGAAGAGAAAGGCAAGAGCAGACAGGTTTTTCTCTCTGCTTTATAGTATCGTGTTGGAGAAATTTTTATAATTCATCTTTCCTCAGTTCGACTATATTTTCTGTTTTTCAGATTTGAGCTCTTAATGGCTACTGACGAGGAGGCAAAGAAGAAAGCTCGGCTTGCCAGATTTGCCTCATTTTTATAG
mRNA sequence
ATGGCGACCGATTTCACAGAAGAACTGAGCGAAAACTCTCTTCCAGGACCAAAACCAACCCTTCAGCTAGATTTAGAATTCGCAGCCGCTTGTAATGACCAACTAGATCAACACCGAAATCGCCGTTTCTCCGCTACAAAGGAAGGCGCTGAATGTCAACGTCCCGCCGTGGGGAGAATACCGGAGTATCATGCTTCTTTCTTTGATATTTTCAAGAAGATCCGTCGTGCGGAGCGGTTCGGGATTCCCGTACATTTATCGGAGGCGGAAAAGAGATTCTCTCGAGCTGAGAGGTTCGGCACTGATTCAGTGTGTGGACCAGATGAAATAGCTAAAGCAGAGGAACTGAAGAGAAAGGCAAGAGCAGACAGATTTGAGCTCTTAATGGCTACTGACGAGGAGGCAAAGAAGAAAGCTCGGCTTGCCAGATTTGCCTCATTTTTATAG
Coding sequence (CDS)
ATGGCGACCGATTTCACAGAAGAACTGAGCGAAAACTCTCTTCCAGGACCAAAACCAACCCTTCAGCTAGATTTAGAATTCGCAGCCGCTTGTAATGACCAACTAGATCAACACCGAAATCGCCGTTTCTCCGCTACAAAGGAAGGCGCTGAATGTCAACGTCCCGCCGTGGGGAGAATACCGGAGTATCATGCTTCTTTCTTTGATATTTTCAAGAAGATCCGTCGTGCGGAGCGGTTCGGGATTCCCGTACATTTATCGGAGGCGGAAAAGAGATTCTCTCGAGCTGAGAGGTTCGGCACTGATTCAGTGTGTGGACCAGATGAAATAGCTAAAGCAGAGGAACTGAAGAGAAAGGCAAGAGCAGACAGATTTGAGCTCTTAATGGCTACTGACGAGGAGGCAAAGAAGAAAGCTCGGCTTGCCAGATTTGCCTCATTTTTATAG
Protein sequence
MATDFTEELSENSLPGPKPTLQLDLEFAAACNDQLDQHRNRRFSATKEGAECQRPAVGRIPEYHASFFDIFKKIRRAERFGIPVHLSEAEKRFSRAERFGTDSVCGPDEIAKAEELKRKARADRFELLMATDEEAKKKARLARFASFL
Homology
BLAST of ClCG10G020700 vs. NCBI nr
Match:
XP_008442609.1 (PREDICTED: protein MODIFIER OF SNC1 11-like isoform X1 [Cucumis melo] >KAA0044051.1 protein MODIFIER OF SNC1 11-like isoform X1 [Cucumis melo var. makuwa] >TYK25084.1 protein MODIFIER OF SNC1 11-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 226.1 bits (575), Expect = 2.0e-55
Identity = 121/151 (80.13%), Postives = 127/151 (84.11%), Query Frame = 0
Query: 1 MATDFTEELSENSLPGPKPTLQLDLEFAAACNDQLDQHRNRRFSATKEGAECQRPAVGRI 60
MATDF EELSEN+LPGPK TL LD AA N +DQH+NR SATKEG E Q AVGRI
Sbjct: 1 MATDFKEELSENTLPGPKQTLPLDFGITAAGNGHVDQHQNRHSSATKEGIESQSSAVGRI 60
Query: 61 PEYHASFFDIFKKIRRAERFGIPVHLSEAEKRFSRAERFGTDSVCGPDEIAKAEELKRKA 120
PE HAS FDIFKKIRRAERFGIPV LSEAEKRFSRAERFG DSVCGPDE+AKAEELKRKA
Sbjct: 61 PESHASVFDIFKKIRRAERFGIPVRLSEAEKRFSRAERFGIDSVCGPDEMAKAEELKRKA 120
Query: 121 RADRFELL---MATDEEAKKKARLARFASFL 149
RA+RFELL MATDEEAKKKARLARFA +L
Sbjct: 121 RAERFELLTLSMATDEEAKKKARLARFAPYL 151
BLAST of ClCG10G020700 vs. NCBI nr
Match:
XP_038904188.1 (protein MODIFIER OF SNC1 11-like [Benincasa hispida])
HSP 1 Score: 224.6 bits (571), Expect = 5.8e-55
Identity = 123/153 (80.39%), Postives = 130/153 (84.97%), Query Frame = 0
Query: 1 MATDFTEELSENSLPGPKPTLQLDLEFAAACNDQLDQHRNRRFSA--TKEGAECQRPAVG 60
MAT+FTEELSEN+LPGPK TL L+L FAAA N Q+DQH+NRR SA TKE E Q AVG
Sbjct: 1 MATNFTEELSENTLPGPKQTLPLNLGFAAAGNGQVDQHQNRRSSATITKEVIESQHAAVG 60
Query: 61 RIPEYHASFFDIFKKIRRAERFGIPVHLSEAEKRFSRAERFGTDSVCGPDEIAKAEELKR 120
RIPEYH S FDIFKKIRRAERFGIPV LSEAEKRFSRAERFG DSVCGPDE+ KAEELKR
Sbjct: 61 RIPEYHVSVFDIFKKIRRAERFGIPVRLSEAEKRFSRAERFGIDSVCGPDEMVKAEELKR 120
Query: 121 KARADRFELL---MATDEEAKKKARLARFASFL 149
KARA+RFELL MAT EEAKKKARLARFA FL
Sbjct: 121 KARAERFELLTLSMATGEEAKKKARLARFAPFL 153
BLAST of ClCG10G020700 vs. NCBI nr
Match:
XP_011651924.1 (protein MODIFIER OF SNC1 11 isoform X1 [Cucumis sativus] >KGN58917.1 hypothetical protein Csa_000994 [Cucumis sativus])
HSP 1 Score: 218.8 bits (556), Expect = 3.2e-53
Identity = 118/151 (78.15%), Postives = 126/151 (83.44%), Query Frame = 0
Query: 1 MATDFTEELSENSLPGPKPTLQLDLEFAAACNDQLDQHRNRRFSATKEGAECQRPAVGRI 60
MATDFT+ELS+N+LPGPK TL L AAA N +DQH+NRR TKEG E Q AVGRI
Sbjct: 1 MATDFTKELSKNTLPGPKQTLPLAFGIAAAGNGHVDQHQNRRSCGTKEGIESQSSAVGRI 60
Query: 61 PEYHASFFDIFKKIRRAERFGIPVHLSEAEKRFSRAERFGTDSVCGPDEIAKAEELKRKA 120
PE HAS FDIFKKIRRAERFGIPV LSEAEKRFSRAERFG DSVCGPDE+AKAEELKRKA
Sbjct: 61 PESHASVFDIFKKIRRAERFGIPVRLSEAEKRFSRAERFGIDSVCGPDEMAKAEELKRKA 120
Query: 121 RADRFELL---MATDEEAKKKARLARFASFL 149
RA+RFELL +ATDEEAKKKARLARFA L
Sbjct: 121 RAERFELLTLSVATDEEAKKKARLARFAPCL 151
BLAST of ClCG10G020700 vs. NCBI nr
Match:
XP_023527279.1 (protein MODIFIER OF SNC1 11-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 213.8 bits (543), Expect = 1.0e-51
Identity = 118/162 (72.84%), Postives = 129/162 (79.63%), Query Frame = 0
Query: 1 MATDFTEELSENSLPGPKPTLQLDLEFAAACNDQLDQHRNRRF-----------SATKEG 60
MATDF+EELSEN+LPGPK L L+L AAA N Q+DQH+NRR +ATKEG
Sbjct: 1 MATDFSEELSENNLPGPKSALPLNLGSAAAGNGQVDQHQNRRSFAVGPSHSVTPTATKEG 60
Query: 61 AECQRPAVGRIPEYHASFFDIFKKIRRAERFGIPVHLSEAEKRFSRAERFGTDSVCGPDE 120
E QR A+GR E+HAS FDIFKKIRRAERFGIPV LSEAEKRFSRAERFG DSVCGPDE
Sbjct: 61 TESQRAALGRTSEHHASVFDIFKKIRRAERFGIPVRLSEAEKRFSRAERFGIDSVCGPDE 120
Query: 121 IAKAEELKRKARADRFELL---MATDEEAKKKARLARFASFL 149
+ KAEELKRKARA+RFELL MATDEEAKKKARL RF+ FL
Sbjct: 121 MFKAEELKRKARAERFELLTLSMATDEEAKKKARLVRFSPFL 162
BLAST of ClCG10G020700 vs. NCBI nr
Match:
KAG7017329.1 (Protein MODIFIER OF SNC1 11 [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 213.8 bits (543), Expect = 1.0e-51
Identity = 118/162 (72.84%), Postives = 128/162 (79.01%), Query Frame = 0
Query: 1 MATDFTEELSENSLPGPKPTLQLDLEFAAACNDQLDQHRNRRF-----------SATKEG 60
MATDFTEELSEN+LPGPK L L+L AAA N Q+DQH+NRR +ATKEG
Sbjct: 1 MATDFTEELSENNLPGPKSALPLNLGSAAAGNGQVDQHQNRRSFAVGPSHSVTPTATKEG 60
Query: 61 AECQRPAVGRIPEYHASFFDIFKKIRRAERFGIPVHLSEAEKRFSRAERFGTDSVCGPDE 120
E QR +GR E+HAS FDIFKKIRRAERFGIPV LSEAEKRFSRAERFG DSVCGPDE
Sbjct: 61 TESQRAVLGRTSEHHASVFDIFKKIRRAERFGIPVRLSEAEKRFSRAERFGIDSVCGPDE 120
Query: 121 IAKAEELKRKARADRFELL---MATDEEAKKKARLARFASFL 149
+ KAEELKRKARA+RFELL MATDEEAKKKARL RF+ FL
Sbjct: 121 MFKAEELKRKARAERFELLTLSMATDEEAKKKARLVRFSPFL 162
BLAST of ClCG10G020700 vs. ExPASy Swiss-Prot
Match:
Q9LZ08 (Protein MODIFIER OF SNC1 11 OS=Arabidopsis thaliana OX=3702 GN=MOS11 PE=1 SV=1)
HSP 1 Score: 87.8 bits (216), Expect = 1.1e-16
Identity = 56/85 (65.88%), Postives = 62/85 (72.94%), Query Frame = 0
Query: 69 DIFKKIRRAERFGIPVHLSEAEKRFSRAERFGTDS---VCGPDEIAKAEELKRKARADRF 128
DI KKIRRAERFG+ V L+E EKR SRAERFGT + V G + KAEELKRKARADRF
Sbjct: 80 DIQKKIRRAERFGVSVKLTEEEKRNSRAERFGTVAAAVVNGSEGTKKAEELKRKARADRF 139
Query: 129 ELLMA------TDEEAKKKARLARF 145
+ A T+EEAKKKARLARF
Sbjct: 140 GVPSATSTTDKTEEEAKKKARLARF 164
BLAST of ClCG10G020700 vs. ExPASy TrEMBL
Match:
A0A5D3DNB7 (Protein MODIFIER OF SNC1 11-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G002070 PE=4 SV=1)
HSP 1 Score: 226.1 bits (575), Expect = 9.7e-56
Identity = 121/151 (80.13%), Postives = 127/151 (84.11%), Query Frame = 0
Query: 1 MATDFTEELSENSLPGPKPTLQLDLEFAAACNDQLDQHRNRRFSATKEGAECQRPAVGRI 60
MATDF EELSEN+LPGPK TL LD AA N +DQH+NR SATKEG E Q AVGRI
Sbjct: 1 MATDFKEELSENTLPGPKQTLPLDFGITAAGNGHVDQHQNRHSSATKEGIESQSSAVGRI 60
Query: 61 PEYHASFFDIFKKIRRAERFGIPVHLSEAEKRFSRAERFGTDSVCGPDEIAKAEELKRKA 120
PE HAS FDIFKKIRRAERFGIPV LSEAEKRFSRAERFG DSVCGPDE+AKAEELKRKA
Sbjct: 61 PESHASVFDIFKKIRRAERFGIPVRLSEAEKRFSRAERFGIDSVCGPDEMAKAEELKRKA 120
Query: 121 RADRFELL---MATDEEAKKKARLARFASFL 149
RA+RFELL MATDEEAKKKARLARFA +L
Sbjct: 121 RAERFELLTLSMATDEEAKKKARLARFAPYL 151
BLAST of ClCG10G020700 vs. ExPASy TrEMBL
Match:
A0A1S3B640 (protein MODIFIER OF SNC1 11-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486433 PE=4 SV=1)
HSP 1 Score: 226.1 bits (575), Expect = 9.7e-56
Identity = 121/151 (80.13%), Postives = 127/151 (84.11%), Query Frame = 0
Query: 1 MATDFTEELSENSLPGPKPTLQLDLEFAAACNDQLDQHRNRRFSATKEGAECQRPAVGRI 60
MATDF EELSEN+LPGPK TL LD AA N +DQH+NR SATKEG E Q AVGRI
Sbjct: 1 MATDFKEELSENTLPGPKQTLPLDFGITAAGNGHVDQHQNRHSSATKEGIESQSSAVGRI 60
Query: 61 PEYHASFFDIFKKIRRAERFGIPVHLSEAEKRFSRAERFGTDSVCGPDEIAKAEELKRKA 120
PE HAS FDIFKKIRRAERFGIPV LSEAEKRFSRAERFG DSVCGPDE+AKAEELKRKA
Sbjct: 61 PESHASVFDIFKKIRRAERFGIPVRLSEAEKRFSRAERFGIDSVCGPDEMAKAEELKRKA 120
Query: 121 RADRFELL---MATDEEAKKKARLARFASFL 149
RA+RFELL MATDEEAKKKARLARFA +L
Sbjct: 121 RAERFELLTLSMATDEEAKKKARLARFAPYL 151
BLAST of ClCG10G020700 vs. ExPASy TrEMBL
Match:
A0A0A0LDV0 (Tho1_MOS11_C domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G736650 PE=4 SV=1)
HSP 1 Score: 218.8 bits (556), Expect = 1.5e-53
Identity = 118/151 (78.15%), Postives = 126/151 (83.44%), Query Frame = 0
Query: 1 MATDFTEELSENSLPGPKPTLQLDLEFAAACNDQLDQHRNRRFSATKEGAECQRPAVGRI 60
MATDFT+ELS+N+LPGPK TL L AAA N +DQH+NRR TKEG E Q AVGRI
Sbjct: 1 MATDFTKELSKNTLPGPKQTLPLAFGIAAAGNGHVDQHQNRRSCGTKEGIESQSSAVGRI 60
Query: 61 PEYHASFFDIFKKIRRAERFGIPVHLSEAEKRFSRAERFGTDSVCGPDEIAKAEELKRKA 120
PE HAS FDIFKKIRRAERFGIPV LSEAEKRFSRAERFG DSVCGPDE+AKAEELKRKA
Sbjct: 61 PESHASVFDIFKKIRRAERFGIPVRLSEAEKRFSRAERFGIDSVCGPDEMAKAEELKRKA 120
Query: 121 RADRFELL---MATDEEAKKKARLARFASFL 149
RA+RFELL +ATDEEAKKKARLARFA L
Sbjct: 121 RAERFELLTLSVATDEEAKKKARLARFAPCL 151
BLAST of ClCG10G020700 vs. ExPASy TrEMBL
Match:
A0A6J1J7D8 (protein MODIFIER OF SNC1 11-like OS=Cucurbita maxima OX=3661 GN=LOC111482427 PE=4 SV=1)
HSP 1 Score: 212.2 bits (539), Expect = 1.4e-51
Identity = 117/162 (72.22%), Postives = 128/162 (79.01%), Query Frame = 0
Query: 1 MATDFTEELSENSLPGPKPTLQLDLEFAAACNDQLDQHRNRRF-----------SATKEG 60
MATDFTEELSEN+LPGPK L L+L AAA N Q+DQH+NRR +ATKEG
Sbjct: 1 MATDFTEELSENNLPGPKSALPLNLGSAAAGNGQVDQHQNRRAFAVGPSHSVTPTATKEG 60
Query: 61 AECQRPAVGRIPEYHASFFDIFKKIRRAERFGIPVHLSEAEKRFSRAERFGTDSVCGPDE 120
E +R +GR E+HAS FDIFKKIRRAERFGIPV LSEAEKRFSRAERFG DSVCGPDE
Sbjct: 61 TESRRATLGRTSEHHASVFDIFKKIRRAERFGIPVRLSEAEKRFSRAERFGIDSVCGPDE 120
Query: 121 IAKAEELKRKARADRFELL---MATDEEAKKKARLARFASFL 149
+ KAEELKRKARA+RFELL MATDEEAKKKARL RF+ FL
Sbjct: 121 MFKAEELKRKARAERFELLTLSMATDEEAKKKARLVRFSPFL 162
BLAST of ClCG10G020700 vs. ExPASy TrEMBL
Match:
A0A6J1F8Q7 (protein MODIFIER OF SNC1 11-like OS=Cucurbita moschata OX=3662 GN=LOC111441859 PE=4 SV=1)
HSP 1 Score: 212.2 bits (539), Expect = 1.4e-51
Identity = 117/162 (72.22%), Postives = 128/162 (79.01%), Query Frame = 0
Query: 1 MATDFTEELSENSLPGPKPTLQLDLEFAAACNDQLDQHRNRRF-----------SATKEG 60
MATDFTEELSEN+LPGPK L L+L AAA N Q+DQH+NRR +ATKEG
Sbjct: 1 MATDFTEELSENNLPGPKSALPLNLGSAAAGNGQVDQHQNRRSFAVGPSHSVTPTATKEG 60
Query: 61 AECQRPAVGRIPEYHASFFDIFKKIRRAERFGIPVHLSEAEKRFSRAERFGTDSVCGPDE 120
E QR +GR E+HAS FDIFKKIRRAERFGIPV LSEAEKRFSRAERFG DSVCGPDE
Sbjct: 61 TESQRAVLGRTSEHHASVFDIFKKIRRAERFGIPVRLSEAEKRFSRAERFGIDSVCGPDE 120
Query: 121 IAKAEELKRKARADRFELL---MATDEEAKKKARLARFASFL 149
+ KAEELKRKARA+RFELL +ATDEEAKKKARL RF+ FL
Sbjct: 121 MFKAEELKRKARAERFELLTLSIATDEEAKKKARLVRFSPFL 162
BLAST of ClCG10G020700 vs. TAIR 10
Match:
AT5G02770.1 (unknown protein; Has 469 Blast hits to 336 proteins in 126 species: Archae - 0; Bacteria - 54; Metazoa - 249; Fungi - 22; Plants - 47; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink). )
HSP 1 Score: 87.8 bits (216), Expect = 7.9e-18
Identity = 56/85 (65.88%), Postives = 62/85 (72.94%), Query Frame = 0
Query: 69 DIFKKIRRAERFGIPVHLSEAEKRFSRAERFGTDS---VCGPDEIAKAEELKRKARADRF 128
DI KKIRRAERFG+ V L+E EKR SRAERFGT + V G + KAEELKRKARADRF
Sbjct: 80 DIQKKIRRAERFGVSVKLTEEEKRNSRAERFGTVAAAVVNGSEGTKKAEELKRKARADRF 139
Query: 129 ELLMA------TDEEAKKKARLARF 145
+ A T+EEAKKKARLARF
Sbjct: 140 GVPSATSTTDKTEEEAKKKARLARF 164
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_008442609.1 | 2.0e-55 | 80.13 | PREDICTED: protein MODIFIER OF SNC1 11-like isoform X1 [Cucumis melo] >KAA004405... | [more] |
| XP_038904188.1 | 5.8e-55 | 80.39 | protein MODIFIER OF SNC1 11-like [Benincasa hispida] | [more] |
| XP_011651924.1 | 3.2e-53 | 78.15 | protein MODIFIER OF SNC1 11 isoform X1 [Cucumis sativus] >KGN58917.1 hypothetica... | [more] |
| XP_023527279.1 | 1.0e-51 | 72.84 | protein MODIFIER OF SNC1 11-like [Cucurbita pepo subsp. pepo] | [more] |
| KAG7017329.1 | 1.0e-51 | 72.84 | Protein MODIFIER OF SNC1 11 [Cucurbita argyrosperma subsp. argyrosperma] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Q9LZ08 | 1.1e-16 | 65.88 | Protein MODIFIER OF SNC1 11 OS=Arabidopsis thaliana OX=3702 GN=MOS11 PE=1 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3DNB7 | 9.7e-56 | 80.13 | Protein MODIFIER OF SNC1 11-like isoform X1 OS=Cucumis melo var. makuwa OX=11946... | [more] |
| A0A1S3B640 | 9.7e-56 | 80.13 | protein MODIFIER OF SNC1 11-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486... | [more] |
| A0A0A0LDV0 | 1.5e-53 | 78.15 | Tho1_MOS11_C domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G73665... | [more] |
| A0A6J1J7D8 | 1.4e-51 | 72.22 | protein MODIFIER OF SNC1 11-like OS=Cucurbita maxima OX=3661 GN=LOC111482427 PE=... | [more] |
| A0A6J1F8Q7 | 1.4e-51 | 72.22 | protein MODIFIER OF SNC1 11-like OS=Cucurbita moschata OX=3662 GN=LOC111441859 P... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT5G02770.1 | 7.9e-18 | 65.88 | unknown protein; Has 469 Blast hits to 336 proteins in 126 species: Archae - 0; ... | [more] |
