ClCG10G015920 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG10G015920
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionProtein Rev like
LocationCG_Chr10: 30457148 .. 30458227 (+)
RNA-Seq ExpressionClCG10G015920
SyntenyClCG10G015920
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAAAAAGTAAAGTGTGACACCATTTTTGTTTAATATAAATAATGTGTCTCACATGGATATTTGTTGCCAAAGCCTTAGTACCATCTTCCCCTTCCCCTTCCCCTTCCCCCTTTGTGGAGATCTATTGTGTTTGTTTCCCAAGAAAACATGGGTCTCAAAATTTTGCTCTCCTTCAAGTTGTTGCTTCTCTTTCTGGCTTTCTCCTTTCTCCTTTCTCCTTCTTCTGCTGTTCCCACCACAAGTAACCCCTTTCATTTCTCTCTTTCATAATTATTTCAATCTCTTTCTACTAATTTTCTCTAATCAATTTTCTTGCCCACCAGGAATCCTCAAATCAACTGCCCAAGATTTGGTTTTTCAGGTCTCTTTCTCTATTTTTCTCAAGATTTTTTTTTTTCTTTTTTTCCTTTTTTTGTGAAAGTTTCTTAGGAACCAAACATGTGTGATGTGGAAATTGAAGTGTGTTTTCATATATAATTCTTTTTTTTTTTTTTTTTTTTTTGTAGGATGTAAGAGATTTGGAGATAAATGATGTAGATTCACTGGAAAGATTGTTTGAAGGAAGATTGATTTTGGAGAACAATGATTATCCCGGGACAGGAGCAAACAATCACCATGATCCAAAGTCTCCTGCAAGACCATAATTTAGCAAGCCCAGATTACCATTCGATTATTAACGATTTTATTTTTACTTCTTTGTGTTTAAATGTTATATATATGTGTGTGTATGTATTTTTGAATCTTAACCAAATTTTAGAAATAAAGGGGTTAGTTTTCAAAATTTATTCTTTTTATTTCTATAAACTTTGGTTAAGATTTCAAACAAAGAATTGTTATGGGATGCCTTTGTAGAGATAAAAATAGGTAAGAAGTTTATTAGAAAATTGAAGGAATGGAAAAGAAAAGAAAAGGGAAAGGGCAATTCTGTCTTTTTACTTACTTTGTTTTAGTCTCCTAATAAATGAGTGGAATGGTTTACTTTTGTGCAGAAAAAAATAGTATTTGTTTGGACTCTTTTCCTTTGTAATTTATATACAACTTTATTGGCTTAATTAATATTGTTTATCTTATTCAATTCA

mRNA sequence

GAAAAAAGTAAAGTGTGACACCATTTTTGTTTAATATAAATAATGTGTCTCACATGGATATTTGTTGCCAAAGCCTTAGTACCATCTTCCCCTTCCCCTTCCCCTTCCCCCTTTGTGGAGATCTATTGTGTTTGTTTCCCAAGAAAACATGGGTCTCAAAATTTTGCTCTCCTTCAAGTTGTTGCTTCTCTTTCTGGCTTTCTCCTTTCTCCTTTCTCCTTCTTCTGCTGTTCCCACCACAAGTAACCCCTTTCATTTCTCTCTTTCATAATTATTTCAATCTCTTTCTACTAATTTTCTCTAATCAATTTTCTTGCCCACCAGGAATCCTCAAATCAACTGCCCAAGATTTGGTTTTTCAGGATGTAAGAGATTTGGAGATAAATGATGTAGATTCACTGGAAAGATTGTTTGAAGGAAGATTGATTTTGGAGAACAATGATTATCCCGGGACAGGAGCAAACAATCACCATGATCCAAAGTCTCCTGCAAGACCATAATTTAGCAAGCCCAGATTACCATTCGATTATTAACGATTTTATTTTTACTTCTTTGTGTTTAAATGTTATATATATGTGTGTGTATGTATTTTTGAATCTTAACCAAATTTTAGAAATAAAGGGGTTAGTTTTCAAAATTTATTCTTTTTATTTCTATAAACTTTGGTTAAGATTTCAAACAAAGAATTGTTATGGGATGCCTTTGTAGAGATAAAAATAGGTAAGAAGTTTATTAGAAAATTGAAGGAATGGAAAAGAAAAGAAAAGGGAAAGGGCAATTCTGTCTTTTTACTTACTTTGTTTTAGTCTCCTAATAAATGAGTGGAATGGTTTACTTTTGTGCAGAAAAAAATAGTATTTGTTTGGACTCTTTTCCTTTGTAATTTATATACAACTTTATTGGCTTAATTAATATTGTTTATCTTATTCAATTCA

Coding sequence (CDS)

ATGGATATTTGTTGCCAAAGCCTTAGTACCATCTTCCCCTTCCCCTTCCCCTTCCCCCTTTGTGGAGATCTATTGTGTTTGTTTCCCAAGAAAACATGGGTCTCAAAATTTTGCTCTCCTTCAAGTTGTTGCTTCTCTTTCTGGCTTTCTCCTTTCTCCTTTCTCCTTCTTCTGCTGTTCCCACCACAAGTAACCCCTTTCATTTCTCTCTTTCATAATTATTTCAATCTCTTTCTACTAATTTTCTCTAATCAATTTTCTTGCCCACCAGGAATCCTCAAATCAACTGCCCAAGATTTGGTTTTTCAGGATGTAAGAGATTTGGAGATAAATGATGTAGATTCACTGGAAAGATTGTTTGAAGGAAGATTGATTTTGGAGAACAATGATTATCCCGGGACAGGAGCAAACAATCACCATGATCCAAAGTCTCCTGCAAGACCATAA

Protein sequence

MDICCQSLSTIFPFPFPFPLCGDLLCLFPKKTWVSKFCSPSSCCFSFWLSPFSFLLLLLFPPQVTPFISLFHNYFNLFLLIFSNQFSCPPGILKSTAQDLVFQDVRDLEINDVDSLERLFEGRLILENNDYPGTGANNHHDPKSPARP
Homology
BLAST of ClCG10G015920 vs. NCBI nr
Match: KAA0053852.1 (hypothetical protein E6C27_scaffold135G002430 [Cucumis melo var. makuwa])

HSP 1 Score: 100.1 bits (248), Expect = 1.6e-17
Identity = 56/78 (71.79%), Postives = 59/78 (75.64%), Query Frame = 0

Query: 78  FLLIFSNQFSCP-PGILKST------AQDLVFQDVRDLEINDVDSLERLFEGRLILENND 137
           FLL  S+ F+ P   ILKST       Q LV +DVRDLEI D DS ERLFEGRLILENND
Sbjct: 17  FLLSSSSSFAVPTTRILKSTFERHPSYQALVHEDVRDLEIIDGDSFERLFEGRLILENND 76

Query: 138 YPGTGANNHHDPKSPARP 149
           YPGTGANNHHDPKSPARP
Sbjct: 77  YPGTGANNHHDPKSPARP 94

BLAST of ClCG10G015920 vs. NCBI nr
Match: KGN59481.1 (hypothetical protein Csa_001422 [Cucumis sativus])

HSP 1 Score: 95.9 bits (237), Expect = 3.1e-16
Identity = 57/86 (66.28%), Postives = 61/86 (70.93%), Query Frame = 0

Query: 74  YFNLFL----LIFSNQFSCPP--GILKST-----AQDLVFQDVRDLEINDVDSLERLFEG 133
           +F LFL    L+ SN     P   ILKST      Q LV QDVRD+EI D DS ERLFEG
Sbjct: 8   FFLLFLAFSFLLSSNSSLAVPTTRILKSTFDHPSYQALVHQDVRDMEIIDGDSFERLFEG 67

Query: 134 RLILENNDYPGTGANNHHDPKSPARP 149
           RLILENNDYPGTGANNHHDPKSPA+P
Sbjct: 68  RLILENNDYPGTGANNHHDPKSPAKP 93

BLAST of ClCG10G015920 vs. NCBI nr
Match: KAG7017658.1 (hypothetical protein SDJN02_19524 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 79.0 bits (193), Expect = 3.9e-11
Identity = 43/68 (63.24%), Postives = 48/68 (70.59%), Query Frame = 0

Query: 81  IFSNQFSCPPGILKSTAQDLVFQDVRDLEINDVDSLERLFEGRLILENNDYPGTGANNHH 140
           IF + F  P      +AQD VFQDVRDLE N  D    LF GRL+LENNDYPGTGANNHH
Sbjct: 33  IFKSTFDQP------SAQDFVFQDVRDLEFNGGD----LF-GRLVLENNDYPGTGANNHH 89

Query: 141 DPKSPARP 149
           DP +PA+P
Sbjct: 93  DPNTPAKP 89

BLAST of ClCG10G015920 vs. NCBI nr
Match: KAG6596972.1 (hypothetical protein SDJN03_10152, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028446.1 hypothetical protein SDJN02_09627 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 77.8 bits (190), Expect = 8.8e-11
Identity = 52/102 (50.98%), Postives = 60/102 (58.82%), Query Frame = 0

Query: 49  LSPFSFLLLLLFPPQVTPFISLFHNYFNLFLLIFSNQFSCPPGILKSTAQDLVFQDVRDL 108
           L P +FLLL L       F  L  +       +  + F  P      +AQ  VFQD RDL
Sbjct: 6   LLPLTFLLLFL------AFAFLISSTAVPTTRVLQSNFDDP------SAQPSVFQDWRDL 65

Query: 109 EINDVDSL----ERLFEGRLILENNDYPGTGANNHHDPKSPA 147
           EI+  DSL    ERL EGR++LENNDYPGTGANNHHDPKSPA
Sbjct: 66  EISGEDSLEFVDERLSEGRVVLENNDYPGTGANNHHDPKSPA 95

BLAST of ClCG10G015920 vs. NCBI nr
Match: KAG6580910.1 (hypothetical protein SDJN03_20912, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.4 bits (189), Expect = 1.1e-10
Identity = 42/68 (61.76%), Postives = 47/68 (69.12%), Query Frame = 0

Query: 81  IFSNQFSCPPGILKSTAQDLVFQDVRDLEINDVDSLERLFEGRLILENNDYPGTGANNHH 140
           IF + F  P      +AQD VFQDVRDLE N  D    LF GR +LENNDYPGTGANNHH
Sbjct: 33  IFKSTFDQP------SAQDFVFQDVRDLEFNGGD----LF-GRFVLENNDYPGTGANNHH 89

Query: 141 DPKSPARP 149
           DP +PA+P
Sbjct: 93  DPNTPAKP 89

BLAST of ClCG10G015920 vs. ExPASy TrEMBL
Match: A0A5A7UDI6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold135G002430 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 8.0e-18
Identity = 56/78 (71.79%), Postives = 59/78 (75.64%), Query Frame = 0

Query: 78  FLLIFSNQFSCP-PGILKST------AQDLVFQDVRDLEINDVDSLERLFEGRLILENND 137
           FLL  S+ F+ P   ILKST       Q LV +DVRDLEI D DS ERLFEGRLILENND
Sbjct: 17  FLLSSSSSFAVPTTRILKSTFERHPSYQALVHEDVRDLEIIDGDSFERLFEGRLILENND 76

Query: 138 YPGTGANNHHDPKSPARP 149
           YPGTGANNHHDPKSPARP
Sbjct: 77  YPGTGANNHHDPKSPARP 94

BLAST of ClCG10G015920 vs. ExPASy TrEMBL
Match: A0A0A0LHJ0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822320 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.5e-16
Identity = 57/86 (66.28%), Postives = 61/86 (70.93%), Query Frame = 0

Query: 74  YFNLFL----LIFSNQFSCPP--GILKST-----AQDLVFQDVRDLEINDVDSLERLFEG 133
           +F LFL    L+ SN     P   ILKST      Q LV QDVRD+EI D DS ERLFEG
Sbjct: 8   FFLLFLAFSFLLSSNSSLAVPTTRILKSTFDHPSYQALVHQDVRDMEIIDGDSFERLFEG 67

Query: 134 RLILENNDYPGTGANNHHDPKSPARP 149
           RLILENNDYPGTGANNHHDPKSPA+P
Sbjct: 68  RLILENNDYPGTGANNHHDPKSPAKP 93

BLAST of ClCG10G015920 vs. ExPASy TrEMBL
Match: A0A5B6ZB32 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_010781 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 9.8e-08
Identity = 31/52 (59.62%), Postives = 37/52 (71.15%), Query Frame = 0

Query: 96  TAQDLVFQDVRDLEINDVDSLERLFEGRLILENNDYPGTGANNHHDPKSPAR 148
           TAQDL  Q V D+  +     ER  EGR+ +E+NDYPGTGANNHHDPK+P R
Sbjct: 76  TAQDLFAQSVMDMRTDGELLEERFIEGRMDIESNDYPGTGANNHHDPKTPGR 127

BLAST of ClCG10G015920 vs. ExPASy TrEMBL
Match: A0A5J4ZL62 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_015769 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 9.8e-08
Identity = 34/53 (64.15%), Postives = 41/53 (77.36%), Query Frame = 0

Query: 96  TAQDLVFQDVRDLEINDVDSLERLF-EGRLILENNDYPGTGANNHHDPKSPAR 148
           TAQD + Q V D++  D + LER F EGR+ LE+NDYPGTGANNHHDPK+P R
Sbjct: 39  TAQDFLAQGVMDMK-TDGELLERQFIEGRMDLESNDYPGTGANNHHDPKTPGR 90

BLAST of ClCG10G015920 vs. ExPASy TrEMBL
Match: A0A2P2KYL1 (Uncharacterized protein MANES_09G136400 OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.4e-06
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 0

Query: 95  STAQDLVFQDVRDLEINDVDSL----ERLFEGRLILENNDYPGTGANNHHDPKSPAR 148
           S+AQD + QD  DL  ND D L    E + EGR+ +E+ DYPGTGANNHHDP++P R
Sbjct: 39  SSAQDFLVQDAPDL--NDGDELTDVGEGISEGRMDMESTDYPGTGANNHHDPRTPGR 93

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0053852.11.6e-1771.79hypothetical protein E6C27_scaffold135G002430 [Cucumis melo var. makuwa][more]
KGN59481.13.1e-1666.28hypothetical protein Csa_001422 [Cucumis sativus][more]
KAG7017658.13.9e-1163.24hypothetical protein SDJN02_19524 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6596972.18.8e-1150.98hypothetical protein SDJN03_10152, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6580910.11.1e-1061.76hypothetical protein SDJN03_20912, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UDI68.0e-1871.79Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A0A0LHJ01.5e-1666.28Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822320 PE=4 SV=1[more]
A0A5B6ZB329.8e-0859.62Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_010781... [more]
A0A5J4ZL629.8e-0864.15Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_015769 PE=4 SV=1[more]
A0A2P2KYL11.4e-0656.14Uncharacterized protein MANES_09G136400 OS=Rhizophora mucronata OX=61149 PE=4 SV... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33474TRANSMEMBRANE PROTEINcoord: 99..147
NoneNo IPR availablePANTHERPTHR33474:SF28PROTEIN, PUTATIVE-RELATEDcoord: 99..147

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG10G015920.2ClCG10G015920.2mRNA