ClCG10G004220 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG10G004220
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr10: 5409866 .. 5411436 (-)
RNA-Seq Expression	ClCG10G004220
Synteny	ClCG10G004220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTTGAAATGGATTCTCAATTCTGCCTTTACTCAAGTTCTCGGCCTCACGGAGAAGCAACACAATCAGAAGGAGGTAGCAGAAGGAATCAAGAACGTGGAGCAAGTGAAGGAGGCGGAAGATTGTTTTTATAGAAGTTTGAATTTCGAAAGTGGGTTTCAAATGCCACTCCATTATCCCAGGTACACGAAGGGGGACTATGAGAAAATGGAGGAAGGTAAGTTGGATTTGCTTCTCAAACAATATGGACTCTGTTTTGATGGTACCCTTGAGGAGAAAAGGGCATTTGCTATTGGGACCTTCTTGTGGCCTGACCAACTTTGAATCCACCCACCAACTGTTTGATGAAATTCCTCTATGAAAAAAATGGCTCAGTTTTTTTTAAGCTTGGTGTTTGTATAGCTAGGTTCTGATGTGATGTTAGTTTAAGATGCAGAGATATTAGTAGCTGTGTCGTTTTTTTGACAAAGCTTTTGTTCGACTGTATCTGCTGATCTTGATGGGGTTTTAGTGAGTTTTGTAAAAACCTCGTCACATATAATGGTATATTAAACACCCTTTCTAATGACTCCATTACTTTCCCCTTTTCTTGGCTTTTTCATCTATCCTTTTACTTTCTTTCTTGCTTTAAATAATTTTGCTTCACAAAAAAAAAGGTACAATCTAGTAAAAGCAACAAGGAGAAACTATTGCATTCATATATTGATTGATCATTCATAGTCTCTACATATAATCTTATTGAAAACTCTCACATAACCGTACAGCATCTCTGATTGTTATTATCTTGGTTGGCCTCAAAGGGATTATCCTGATGCGGCGGCCATCCCGGCCATATCACAGGCCATGGGACAGGTTGGGGCTGCGGTTGTGGCAGCATTAATTGCCAAGGATATGGCTGCGGCCGCGGCAGGTTGGGGTAAGTTCTGTCAAACCAATGAGATTGTTCAGGGAAGCTCTGGTAAGAATGTGGATATGAAAGTTGATTAGTGGGATCATCTCCATAAGGGTAATATCTTCTATCTCCAGCTTCACCATCAAATCTTATACTTTTCACCTCTGCATGTTTGCCTGACTTTTCAATCACTTTTAAGAATGTTCTTGGATTCACTCTTCCACAGATTCTGACTGATCCATCCTCTGAATCCATTGTGATTGTGTAAATACCTAATCAAAAAAACAAGAGGGGAATAAGAAACAGAGGGAAATAGAAGAAATAGAGAAGGAGAGAAAATATATAAACCATAGATGTTTTGTAGAATTTCTTGGACTTTTGCTTTGCATGCTTCACATTGAACACTTGCATTAAGAACACAACTCTGCAACAAAGTGAAAATGTTTAGTTAGCTTTAAAAGAAAAGAAAAAGGGAAAGAAAAGGAAAAAGTGTCTGCTTTTGGAGTGAAACCATTTCTGCAACAGAGTAATCCATTGATTTCATCTATGTAGATCGTTGAAATGGCTGGTTGAGTTTGAGGTTCTTTCTGGGAGAAGAAATGGGAAGAAATGGGGTTCTTCTAATTCTGTTTCGCAGCTCTTTGATGAAGAAGAGAGCAATCAAGGGGGGAAATAA

mRNA sequence

ATGGGGTTGAAATGGATTCTCAATTCTGCCTTTACTCAAGTTCTCGGCCTCACGGAGAAGCAACACAATCAGAAGGAGGTAGCAGAAGGAATCAAGAACGTGGAGCAAGTGAAGGAGGCGGAAGATTGTTTTTATAGAAGTTTGAATTTCGAAAGTGGGTTTCAAATGCCACTCCATTATCCCAGCATCTCTGATTGTTATTATCTTGGTTGGCCTCAAAGGGATTATCCTGATGCGGCGGCCATCCCGGCCATATCACAGGCCATGGGACAGGTTGGGGCTGCGGTTGTGGCAGCATTAATTGCCAAGGATATGGCTGCGGCCGCGGCAGGTTGGGCTTCACCATCAAATCTTATACTTTTCACCTCTGCATGTTTGCCTGACTTTTCAATCACTTTTAAGAATGTTCTTGGATTCACTCTTCCACAGATTCTGACTGATCCATCCTCTGAATCCATTGTGATTGTATCGTTGAAATGGCTGGTTGAGTTTGAGGTTCTTTCTGGGAGAAGAAATGGGAAGAAATGGGGTTCTTCTAATTCTGTTTCGCAGCTCTTTGATGAAGAAGAGAGCAATCAAGGGGGGAAATAA

Coding sequence (CDS)

ATGGGGTTGAAATGGATTCTCAATTCTGCCTTTACTCAAGTTCTCGGCCTCACGGAGAAGCAACACAATCAGAAGGAGGTAGCAGAAGGAATCAAGAACGTGGAGCAAGTGAAGGAGGCGGAAGATTGTTTTTATAGAAGTTTGAATTTCGAAAGTGGGTTTCAAATGCCACTCCATTATCCCAGCATCTCTGATTGTTATTATCTTGGTTGGCCTCAAAGGGATTATCCTGATGCGGCGGCCATCCCGGCCATATCACAGGCCATGGGACAGGTTGGGGCTGCGGTTGTGGCAGCATTAATTGCCAAGGATATGGCTGCGGCCGCGGCAGGTTGGGCTTCACCATCAAATCTTATACTTTTCACCTCTGCATGTTTGCCTGACTTTTCAATCACTTTTAAGAATGTTCTTGGATTCACTCTTCCACAGATTCTGACTGATCCATCCTCTGAATCCATTGTGATTGTATCGTTGAAATGGCTGGTTGAGTTTGAGGTTCTTTCTGGGAGAAGAAATGGGAAGAAATGGGGTTCTTCTAATTCTGTTTCGCAGCTCTTTGATGAAGAAGAGAGCAATCAAGGGGGGAAATAA

Protein sequence

MGLKWILNSAFTQVLGLTEKQHNQKEVAEGIKNVEQVKEAEDCFYRSLNFESGFQMPLHYPSISDCYYLGWPQRDYPDAAAIPAISQAMGQVGAAVVAALIAKDMAAAAAGWASPSNLILFTSACLPDFSITFKNVLGFTLPQILTDPSSESIVIVSLKWLVEFEVLSGRRNGKKWGSSNSVSQLFDEEESNQGGK

Homology

[Close]

BLAST of ClCG10G004220 vs. NCBI nr
Match: KAG7015590.1 (hypothetical protein SDJN02_23226, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 124.8 bits (312), Expect = 8.3e-25
Identity = 83/161 (51.55%), Postives = 94/161 (58.39%), Query Frame = 0


Query: 1   MGLKWILNSAFTQVLGLTEK-QHNQKEVAEGIKNVEQVKEAEDCFYRSLNFESGFQMPLH 60
           MGLKWILNSAFTQVLGLTEK QHNQ E  EGIKNVEQVKE+EDCFY  LNFESGFQMPLH
Sbjct: 1   MGLKWILNSAFTQVLGLTEKQQHNQNEAGEGIKNVEQVKESEDCFYGGLNFESGFQMPLH 60

Query: 61  YPSISDCYYLGWPQRDYPDAAAIPAISQAMGQVGAAVVAALIAKDMAAAAAGWASPSNLI 120
           YP         + + DY +      +   + Q G     A +         G  +     
Sbjct: 61  YPR--------YTKADY-EKMEDGKLDLLLKQYGLRFEGAGLPGGPPGPIIGHGTGCGCG 120

Query: 121 LFTSAC----LPDFSITFKNVLGFTLPQILTDPSSESIVIV 157
             +  C           + NVLGFTLPQILTDPSSESIV+V
Sbjct: 121 CGSMNCQGYGCGGSGGCWGNVLGFTLPQILTDPSSESIVMV 152

[Close]

BLAST of ClCG10G004220 vs. NCBI nr
Match: KAG6577527.1 (hypothetical protein SDJN03_25101, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 117.1 bits (292), Expect = 1.7e-22
Identity = 59/77 (76.62%), Postives = 61/77 (79.22%), Query Frame = 0


Query: 1  MGLKWILNSAFTQVLGLTEK-QHNQKEVAEGIKNVEQVKEAEDCFYRSLNFESGFQMPLH 60
          MGLKWILNSAFTQVLGLTEK QHNQ E  EGIKNVEQVKE+EDCFY  LNFESGFQMPLH
Sbjct: 1  MGLKWILNSAFTQVLGLTEKQQHNQNEAGEGIKNVEQVKESEDCFYGGLNFESGFQMPLH 60

Query: 61 YPSISDCYYLGWPQRDY 77
          YP     +   WP R Y
Sbjct: 61 YPR---GWITRWPARPY 74

[Close]

BLAST of ClCG10G004220 vs. NCBI nr
Match: XP_022965232.1 (uncharacterized protein LOC111465146 [Cucurbita maxima])

HSP 1 Score: 116.3 bits (290), Expect = 2.9e-22
Identity = 57/69 (82.61%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 1  MGLKWILNSAFTQVLGLTEKQH-NQKEVAEGIKNVEQVKEAEDCFYRSLNFESGFQMPLH 60
          MGLKWILNSAFTQVLGLTEKQH NQ E  EGIKNVEQVKEAEDCFY  LNFESGFQMPLH
Sbjct: 1  MGLKWILNSAFTQVLGLTEKQHRNQNEAGEGIKNVEQVKEAEDCFYGGLNFESGFQMPLH 60

Query: 61 YPSISDCYY 69
          YP  +   Y
Sbjct: 61 YPRYTKADY 69

[Close]

BLAST of ClCG10G004220 vs. NCBI nr
Match: XP_022932392.1 (uncharacterized protein LOC111438758 [Cucurbita moschata])

HSP 1 Score: 113.2 bits (282), Expect = 2.5e-21
Identity = 55/69 (79.71%), Postives = 57/69 (82.61%), Query Frame = 0


Query: 1  MGLKWILNSAFTQVLGLTEK-QHNQKEVAEGIKNVEQVKEAEDCFYRSLNFESGFQMPLH 60
          MGLKWILNSAFTQVLGLTEK QHNQ E  EG KNVEQVKE+EDCFY  LNFESGFQMPLH
Sbjct: 1  MGLKWILNSAFTQVLGLTEKQQHNQNEAGEGTKNVEQVKESEDCFYGGLNFESGFQMPLH 60

Query: 61 YPSISDCYY 69
          YP  +   Y
Sbjct: 61 YPRYTKADY 69

[Close]

BLAST of ClCG10G004220 vs. NCBI nr
Match: XP_038904207.1 (uncharacterized protein LOC120090553 [Benincasa hispida])

HSP 1 Score: 113.2 bits (282), Expect = 2.5e-21
Identity = 54/62 (87.10%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 1  MGLKWILNSAFTQVLGLTEK-QHNQKEVAEGIKNVEQVKEAEDCFYRSLNFESGFQMPLH 60
          MGLKWILNSAFTQVLGLT+K QHNQKE  EGI+NVEQVKEA+DCFY  LNFESGFQMPLH
Sbjct: 1  MGLKWILNSAFTQVLGLTDKQQHNQKEAGEGIENVEQVKEAQDCFYGGLNFESGFQMPLH 60

Query: 61 YP 62
          YP
Sbjct: 61 YP 62

[Close]

BLAST of ClCG10G004220 vs. ExPASy TrEMBL
Match: A0A6J1HJS9 (uncharacterized protein LOC111465146 OS=Cucurbita maxima OX=3661 GN=LOC111465146 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.4e-22
Identity = 57/69 (82.61%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 1  MGLKWILNSAFTQVLGLTEKQH-NQKEVAEGIKNVEQVKEAEDCFYRSLNFESGFQMPLH 60
          MGLKWILNSAFTQVLGLTEKQH NQ E  EGIKNVEQVKEAEDCFY  LNFESGFQMPLH
Sbjct: 1  MGLKWILNSAFTQVLGLTEKQHRNQNEAGEGIKNVEQVKEAEDCFYGGLNFESGFQMPLH 60

Query: 61 YPSISDCYY 69
          YP  +   Y
Sbjct: 61 YPRYTKADY 69

[Close]

BLAST of ClCG10G004220 vs. ExPASy TrEMBL
Match: A0A6J1EWJ7 (uncharacterized protein LOC111438758 OS=Cucurbita moschata OX=3662 GN=LOC111438758 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.2e-21
Identity = 55/69 (79.71%), Postives = 57/69 (82.61%), Query Frame = 0


Query: 1  MGLKWILNSAFTQVLGLTEK-QHNQKEVAEGIKNVEQVKEAEDCFYRSLNFESGFQMPLH 60
          MGLKWILNSAFTQVLGLTEK QHNQ E  EG KNVEQVKE+EDCFY  LNFESGFQMPLH
Sbjct: 1  MGLKWILNSAFTQVLGLTEKQQHNQNEAGEGTKNVEQVKESEDCFYGGLNFESGFQMPLH 60

Query: 61 YPSISDCYY 69
          YP  +   Y
Sbjct: 61 YPRYTKADY 69

[Close]

BLAST of ClCG10G004220 vs. ExPASy TrEMBL
Match: A0A5D3CPN0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00090 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 2.8e-18
Identity = 57/81 (70.37%), Postives = 60/81 (74.07%), Query Frame = 0


Query: 1  MGLKWILNSAFTQVLGLTEK-QHNQKEV-AEGIKNVEQVKEAEDCFY-RSLNFESGFQMP 60
          MGLKWILNSAFTQVLGLTEK Q NQKE   EGIKNVEQVKE  DCFY   LNFESGFQMP
Sbjct: 1  MGLKWILNSAFTQVLGLTEKQQQNQKEAGGEGIKNVEQVKEGRDCFYGGGLNFESGFQMP 60

Query: 61 LHYPSISDCYYLGWPQRDYPD 79
          LHYP         + +RDY +
Sbjct: 61 LHYPR--------YTKRDYEE 73

[Close]

BLAST of ClCG10G004220 vs. ExPASy TrEMBL
Match: A0A1S3BM13 (uncharacterized protein LOC103491021 OS=Cucumis melo OX=3656 GN=LOC103491021 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 2.8e-18
Identity = 57/81 (70.37%), Postives = 60/81 (74.07%), Query Frame = 0


Query: 1  MGLKWILNSAFTQVLGLTEK-QHNQKEV-AEGIKNVEQVKEAEDCFY-RSLNFESGFQMP 60
          MGLKWILNSAFTQVLGLTEK Q NQKE   EGIKNVEQVKE  DCFY   LNFESGFQMP
Sbjct: 1  MGLKWILNSAFTQVLGLTEKLQQNQKEAGGEGIKNVEQVKEGRDCFYGGGLNFESGFQMP 60

Query: 61 LHYPSISDCYYLGWPQRDYPD 79
          LHYP         + +RDY +
Sbjct: 61 LHYPR--------YTKRDYEE 73

[Close]

BLAST of ClCG10G004220 vs. ExPASy TrEMBL
Match: A0A0A0L4U1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G047750 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 6.2e-18
Identity = 56/81 (69.14%), Postives = 60/81 (74.07%), Query Frame = 0


Query: 1  MGLKWILNSAFTQVLGLTEK-QHNQKEV-AEGIKNVEQVKEAEDCFY-RSLNFESGFQMP 60
          MGLKWILNSAFTQVLGLTEK Q NQKE   EGIKNVEQVKE  DCFY   LNF+SGFQMP
Sbjct: 1  MGLKWILNSAFTQVLGLTEKQQQNQKEAGGEGIKNVEQVKEGRDCFYGGDLNFQSGFQMP 60

Query: 61 LHYPSISDCYYLGWPQRDYPD 79
          LHYP         + +RDY +
Sbjct: 61 LHYPR--------YTKRDYEE 73

The following BLAST results are available for this feature:

BLAST of ClCG10G004220 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7015590.1	8.3e-25	51.55	hypothetical protein SDJN02_23226, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6577527.1	1.7e-22	76.62	hypothetical protein SDJN03_25101, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022965232.1	2.9e-22	82.61	uncharacterized protein LOC111465146 [Cucurbita maxima]	[more]
XP_022932392.1	2.5e-21	79.71	uncharacterized protein LOC111438758 [Cucurbita moschata]	[more]
XP_038904207.1	2.5e-21	87.10	uncharacterized protein LOC120090553 [Benincasa hispida]	[more]

BLAST of ClCG10G004220 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG10G004220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HJS9	1.4e-22	82.61	uncharacterized protein LOC111465146 OS=Cucurbita maxima OX=3661 GN=LOC111465146...	[more]
A0A6J1EWJ7	1.2e-21	79.71	uncharacterized protein LOC111438758 OS=Cucurbita moschata OX=3662 GN=LOC1114387...	[more]
A0A5D3CPN0	2.8e-18	70.37	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BM13	2.8e-18	70.37	uncharacterized protein LOC103491021 OS=Cucumis melo OX=3656 GN=LOC103491021 PE=...	[more]
A0A0A0L4U1	6.2e-18	69.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G047750 PE=4 SV=1	[more]

BLAST of ClCG10G004220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 174..196

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G004220.2	ClCG10G004220.2	mRNA