Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCCTCATCCTATTACGTATGAGAGGATTAGGCGGCGGCGGCGGCGGGGCTCCTGCAGAGGCTTCCGCCTGAGCTCCAGAAGACTGTCCGTGTGGAAGCTGCGGGCGAAGTTGGGGTGGGTGTTGCGGCGGATCTTAAACTCGTGGCGGCGTTCCATTGTTGAGATTAAGAAGGGCGGGAGATCAAAGGGTTGTTCTTCTTCGGCGGCGGCGCAACCGAGATGCGAGTGCAGGCTCAGCTCCTTCCGCCGCTCCAACTCCTTCTACGCCGAAGCCATTGCCGATTGCTTGGATTTCATCAAGACCTCCTCCTCCTCCTCCTCCACTTCCACTTCCACTTCCCTCTGA
mRNA sequence
ATGGATCCTCATCCTATTACGTATGAGAGGATTAGGCGGCGGCGGCGGCGGGGCTCCTGCAGAGGCTTCCGCCTGAGCTCCAGAAGACTGTCCGTGTGGAAGCTGCGGGCGAAGTTGGGGTGGGTGTTGCGGCGGATCTTAAACTCGTGGCGGCGTTCCATTGTTGAGATTAAGAAGGGCGGGAGATCAAAGGGTTGTTCTTCTTCGGCGGCGGCGCAACCGAGATGCGAGTGCAGGCTCAGCTCCTTCCGCCGCTCCAACTCCTTCTACGCCGAAGCCATTGCCGATTGCTTGGATTTCATCAAGACCTCCTCCTCCTCCTCCTCCACTTCCACTTCCACTTCCCTCTGA
Coding sequence (CDS)
ATGGATCCTCATCCTATTACGTATGAGAGGATTAGGCGGCGGCGGCGGCGGGGCTCCTGCAGAGGCTTCCGCCTGAGCTCCAGAAGACTGTCCGTGTGGAAGCTGCGGGCGAAGTTGGGGTGGGTGTTGCGGCGGATCTTAAACTCGTGGCGGCGTTCCATTGTTGAGATTAAGAAGGGCGGGAGATCAAAGGGTTGTTCTTCTTCGGCGGCGGCGCAACCGAGATGCGAGTGCAGGCTCAGCTCCTTCCGCCGCTCCAACTCCTTCTACGCCGAAGCCATTGCCGATTGCTTGGATTTCATCAAGACCTCCTCCTCCTCCTCCTCCACTTCCACTTCCACTTCCCTCTGA
Protein sequence
MDPHPITYERIRRRRRRGSCRGFRLSSRRLSVWKLRAKLGWVLRRILNSWRRSIVEIKKGGRSKGCSSSAAAQPRCECRLSSFRRSNSFYAEAIADCLDFIKTSSSSSSTSTSTSL
Homology
BLAST of ClCG10G000110 vs. NCBI nr
Match:
KAA0052904.1 (hypothetical protein E6C27_scaffold344G00100 [Cucumis melo var. makuwa] >TYK11358.1 hypothetical protein E5676_scaffold139G00100 [Cucumis melo var. makuwa])
HSP 1 Score: 132.5 bits (332), Expect = 2.4e-27
Identity = 83/110 (75.45%), Postives = 90/110 (81.82%), Query Frame = 0
Query: 5 PITYERIRRRRRRGSCRGFRLSSRRLSVWKLRAKLGWVLRRILNSWRRSIVEIKKGGRSK 64
PITYERIRRR RR SCRGFRL+SRRLSV KL++K GW+L RILN WRRSIV+IKK GRS
Sbjct: 3 PITYERIRRRPRR-SCRGFRLTSRRLSVSKLQSKFGWLL-RILNWWRRSIVDIKKRGRSS 62
Query: 65 GCSSSAAAQPRCECRLSSFRRSNSFYAEAIADCLDFIKTSSSSSSTSTST 115
SS++ AQ RL SFRRSNSFYAEAIADCLDFIKTSSSS ST ST
Sbjct: 63 KGSSNSGAQ---ATRLRSFRRSNSFYAEAIADCLDFIKTSSSSFSTPPST 107
BLAST of ClCG10G000110 vs. NCBI nr
Match:
KAE8637405.1 (hypothetical protein CSA_023382 [Cucumis sativus] >KGN55589.1 hypothetical protein Csa_011775 [Cucumis sativus])
HSP 1 Score: 129.4 bits (324), Expect = 2.0e-26
Identity = 78/105 (74.29%), Postives = 87/105 (82.86%), Query Frame = 0
Query: 5 PITYERIRRRRRRGSCRGFRLSSRRLSVWKLRAKLGWVLRRILNSWRRSIVEIKKGGRSK 64
PITYERI RR+RR SCRGFRL+SRRLSV KLR+K GW+L RILN WRRSIVEIKK G S
Sbjct: 3 PITYERITRRQRR-SCRGFRLTSRRLSVSKLRSKFGWLL-RILNRWRRSIVEIKKSGTSS 62
Query: 65 GCSSSAAAQPRCECRLSSFRRSNSFYAEAIADCLDFIKTSSSSSS 110
SS++AAQ +L SFRRSNSFYAEAIADCLDFIKT+SS S+
Sbjct: 63 KGSSNSAAQ---AAKLRSFRRSNSFYAEAIADCLDFIKTTSSFST 102
BLAST of ClCG10G000110 vs. NCBI nr
Match:
KAG6596289.1 (hypothetical protein SDJN03_09469, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 116.3 bits (290), Expect = 1.7e-22
Identity = 74/120 (61.67%), Postives = 85/120 (70.83%), Query Frame = 0
Query: 5 PITYERIRRRRRR-GSCRGFRLSSRRLSVWKLRAKLGWVLRRILNSWRRS------IVEI 64
PITY+RIRRR CRGF L SRR SV KLRAK W+L RILN WRRS I +
Sbjct: 78 PITYQRIRRRSHGFARCRGFHLHSRRFSVSKLRAKFDWLL-RILNRWRRSYSWSIKINKA 137
Query: 65 KKGGRSKGCSSSAAAQPRC----ECRLSSFRRSNSFYAEAIADCLDFIKTSSSSSSTSTS 114
++GGRSK ++++A PRC ECRL SFRRSNSFYAEAIADCLDFIK SS SS ++S
Sbjct: 138 RRGGRSKASATASAEFPRCVDRGECRLRSFRRSNSFYAEAIADCLDFIKRSSVSSDRASS 196
BLAST of ClCG10G000110 vs. NCBI nr
Match:
KAG7027838.1 (hypothetical protein SDJN02_09015, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 116.3 bits (290), Expect = 1.7e-22
Identity = 74/120 (61.67%), Postives = 85/120 (70.83%), Query Frame = 0
Query: 5 PITYERIRRRRRR-GSCRGFRLSSRRLSVWKLRAKLGWVLRRILNSWRRS------IVEI 64
PITY+RIRRR CRGF L SRR SV KLRAK W+L RILN WRRS I +
Sbjct: 3 PITYQRIRRRSHGFARCRGFHLHSRRFSVSKLRAKFDWLL-RILNRWRRSYSWSIKINKA 62
Query: 65 KKGGRSKGCSSSAAAQPRC----ECRLSSFRRSNSFYAEAIADCLDFIKTSSSSSSTSTS 114
++GGRSK ++++A PRC ECRL SFRRSNSFYAEAIADCLDFIK SS SS ++S
Sbjct: 63 RRGGRSKASATASAEFPRCVDRGECRLRSFRRSNSFYAEAIADCLDFIKRSSVSSDRASS 121
BLAST of ClCG10G000110 vs. NCBI nr
Match:
XP_022158286.1 (uncharacterized protein LOC111024807 [Momordica charantia])
HSP 1 Score: 97.1 bits (240), Expect = 1.1e-16
Identity = 68/107 (63.55%), Postives = 75/107 (70.09%), Query Frame = 0
Query: 5 PITYERI---RRRRRRGSCRGFRLSSRRLSVWKLRAKLGWVLRRILNSWRRSIVEIKKGG 64
PI+YERI RRR S RGFRL+SRR SV +LRAK L RILN WRRS IKK
Sbjct: 80 PISYERIIGKGSRRRSQSARGFRLNSRRFSVSRLRAKF-MCLLRILNKWRRS---IKKMR 139
Query: 65 RSKGCSSSAAAQPRCECRLSSFRRSNSFYAEAIADCLDFIKTSSSSS 109
RSK + A P C RL SFRRSNSFYAEA+ADCLDFIKT++SSS
Sbjct: 140 RSK---AEVAEFPWCTDRLRSFRRSNSFYAEAMADCLDFIKTNTSSS 179
BLAST of ClCG10G000110 vs. ExPASy TrEMBL
Match:
A0A5A7UC85 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00100 PE=4 SV=1)
HSP 1 Score: 132.5 bits (332), Expect = 1.1e-27
Identity = 83/110 (75.45%), Postives = 90/110 (81.82%), Query Frame = 0
Query: 5 PITYERIRRRRRRGSCRGFRLSSRRLSVWKLRAKLGWVLRRILNSWRRSIVEIKKGGRSK 64
PITYERIRRR RR SCRGFRL+SRRLSV KL++K GW+L RILN WRRSIV+IKK GRS
Sbjct: 3 PITYERIRRRPRR-SCRGFRLTSRRLSVSKLQSKFGWLL-RILNWWRRSIVDIKKRGRSS 62
Query: 65 GCSSSAAAQPRCECRLSSFRRSNSFYAEAIADCLDFIKTSSSSSSTSTST 115
SS++ AQ RL SFRRSNSFYAEAIADCLDFIKTSSSS ST ST
Sbjct: 63 KGSSNSGAQ---ATRLRSFRRSNSFYAEAIADCLDFIKTSSSSFSTPPST 107
BLAST of ClCG10G000110 vs. ExPASy TrEMBL
Match:
A0A0A0L3I7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G000130 PE=4 SV=1)
HSP 1 Score: 129.4 bits (324), Expect = 9.6e-27
Identity = 78/105 (74.29%), Postives = 87/105 (82.86%), Query Frame = 0
Query: 5 PITYERIRRRRRRGSCRGFRLSSRRLSVWKLRAKLGWVLRRILNSWRRSIVEIKKGGRSK 64
PITYERI RR+RR SCRGFRL+SRRLSV KLR+K GW+L RILN WRRSIVEIKK G S
Sbjct: 3 PITYERITRRQRR-SCRGFRLTSRRLSVSKLRSKFGWLL-RILNRWRRSIVEIKKSGTSS 62
Query: 65 GCSSSAAAQPRCECRLSSFRRSNSFYAEAIADCLDFIKTSSSSSS 110
SS++AAQ +L SFRRSNSFYAEAIADCLDFIKT+SS S+
Sbjct: 63 KGSSNSAAQ---AAKLRSFRRSNSFYAEAIADCLDFIKTTSSFST 102
BLAST of ClCG10G000110 vs. ExPASy TrEMBL
Match:
A0A6J1E0I4 (uncharacterized protein LOC111024807 OS=Momordica charantia OX=3673 GN=LOC111024807 PE=4 SV=1)
HSP 1 Score: 97.1 bits (240), Expect = 5.3e-17
Identity = 68/107 (63.55%), Postives = 75/107 (70.09%), Query Frame = 0
Query: 5 PITYERI---RRRRRRGSCRGFRLSSRRLSVWKLRAKLGWVLRRILNSWRRSIVEIKKGG 64
PI+YERI RRR S RGFRL+SRR SV +LRAK L RILN WRRS IKK
Sbjct: 80 PISYERIIGKGSRRRSQSARGFRLNSRRFSVSRLRAKF-MCLLRILNKWRRS---IKKMR 139
Query: 65 RSKGCSSSAAAQPRCECRLSSFRRSNSFYAEAIADCLDFIKTSSSSS 109
RSK + A P C RL SFRRSNSFYAEA+ADCLDFIKT++SSS
Sbjct: 140 RSK---AEVAEFPWCTDRLRSFRRSNSFYAEAMADCLDFIKTNTSSS 179
BLAST of ClCG10G000110 vs. ExPASy TrEMBL
Match:
A0A165XTS4 (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014121 PE=4 SV=1)
HSP 1 Score: 75.5 bits (184), Expect = 1.7e-10
Identity = 53/115 (46.09%), Postives = 70/115 (60.87%), Query Frame = 0
Query: 6 ITYERIRRRRR--RGSCRGFRLSSRRLSVWKLRAKLGWVLRRILNSWR------RSIVEI 65
+ Y R+R RR G CRGFRL++RR SV++LRAK ++ + + WR R+I
Sbjct: 5 LKYNRVRDHRRSFHGPCRGFRLNARRFSVYRLRAKFYYLFKILSGRWRSWYKHARNICHS 64
Query: 66 KKGGRSKGCSSSAAAQPRCECRLSSFRRSNSFYAEAIADCLDFIKTSSSSSSTST 113
+ S+ S A PR + RL SF RSNSFY+EAIADCL+FIK SS S +T
Sbjct: 65 HRKKESRE-FVSRNAYPRVQNRLRSFGRSNSFYSEAIADCLEFIKRSSVSVDENT 118
BLAST of ClCG10G000110 vs. ExPASy TrEMBL
Match:
A0A2G3D6M2 (Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_04959 PE=4 SV=1)
HSP 1 Score: 68.6 bits (166), Expect = 2.0e-08
Identity = 52/123 (42.28%), Postives = 65/123 (52.85%), Query Frame = 0
Query: 6 ITYERIRRRRRRGSCRGFRLSSRRLSVWKLRAKLGWVLRRILNSWRRSIVEIKK------ 65
++Y R+ RR G+ RGF+L+SRR SV +LRAK ++ R SWR S ++
Sbjct: 4 MSYNRVGRRSCCGTTRGFKLNSRRFSVQRLRAKFMYLYRLFCRSWRSSYKYTRRLLKFSD 63
Query: 66 ----------GGRSKGCSSSAAAQ-----PRCECRLSSFRRSNSFYAEAIADCLDFIKTS 108
GG K S A E RL S+ RSNSFYAEAIADCLDFIK +
Sbjct: 64 KKVSSHDQSYGGNCKKNLVSEYADCGMYGNNYEYRLKSYGRSNSFYAEAIADCLDFIKRN 123
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAA0052904.1 | 2.4e-27 | 75.45 | hypothetical protein E6C27_scaffold344G00100 [Cucumis melo var. makuwa] >TYK1135... | [more] |
| KAE8637405.1 | 2.0e-26 | 74.29 | hypothetical protein CSA_023382 [Cucumis sativus] >KGN55589.1 hypothetical prote... | [more] |
| KAG6596289.1 | 1.7e-22 | 61.67 | hypothetical protein SDJN03_09469, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KAG7027838.1 | 1.7e-22 | 61.67 | hypothetical protein SDJN02_09015, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
| XP_022158286.1 | 1.1e-16 | 63.55 | uncharacterized protein LOC111024807 [Momordica charantia] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7UC85 | 1.1e-27 | 75.45 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A0A0L3I7 | 9.6e-27 | 74.29 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G000130 PE=4 SV=1 | [more] |
| A0A6J1E0I4 | 5.3e-17 | 63.55 | uncharacterized protein LOC111024807 OS=Momordica charantia OX=3673 GN=LOC111024... | [more] |
| A0A165XTS4 | 1.7e-10 | 46.09 | Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014121 ... | [more] |
| A0A2G3D6M2 | 2.0e-08 | 42.28 | Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_04959 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
