ClCG10G000110 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG10G000110
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr10: 214249 .. 214599 (+)
RNA-Seq Expression	ClCG10G000110
Synteny	ClCG10G000110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCCTCATCCTATTACGTATGAGAGGATTAGGCGGCGGCGGCGGCGGGGCTCCTGCAGAGGCTTCCGCCTGAGCTCCAGAAGACTGTCCGTGTGGAAGCTGCGGGCGAAGTTGGGGTGGGTGTTGCGGCGGATCTTAAACTCGTGGCGGCGTTCCATTGTTGAGATTAAGAAGGGCGGGAGATCAAAGGGTTGTTCTTCTTCGGCGGCGGCGCAACCGAGATGCGAGTGCAGGCTCAGCTCCTTCCGCCGCTCCAACTCCTTCTACGCCGAAGCCATTGCCGATTGCTTGGATTTCATCAAGACCTCCTCCTCCTCCTCCTCCACTTCCACTTCCACTTCCCTCTGA

mRNA sequence

ATGGATCCTCATCCTATTACGTATGAGAGGATTAGGCGGCGGCGGCGGCGGGGCTCCTGCAGAGGCTTCCGCCTGAGCTCCAGAAGACTGTCCGTGTGGAAGCTGCGGGCGAAGTTGGGGTGGGTGTTGCGGCGGATCTTAAACTCGTGGCGGCGTTCCATTGTTGAGATTAAGAAGGGCGGGAGATCAAAGGGTTGTTCTTCTTCGGCGGCGGCGCAACCGAGATGCGAGTGCAGGCTCAGCTCCTTCCGCCGCTCCAACTCCTTCTACGCCGAAGCCATTGCCGATTGCTTGGATTTCATCAAGACCTCCTCCTCCTCCTCCTCCACTTCCACTTCCACTTCCCTCTGA

Coding sequence (CDS)

ATGGATCCTCATCCTATTACGTATGAGAGGATTAGGCGGCGGCGGCGGCGGGGCTCCTGCAGAGGCTTCCGCCTGAGCTCCAGAAGACTGTCCGTGTGGAAGCTGCGGGCGAAGTTGGGGTGGGTGTTGCGGCGGATCTTAAACTCGTGGCGGCGTTCCATTGTTGAGATTAAGAAGGGCGGGAGATCAAAGGGTTGTTCTTCTTCGGCGGCGGCGCAACCGAGATGCGAGTGCAGGCTCAGCTCCTTCCGCCGCTCCAACTCCTTCTACGCCGAAGCCATTGCCGATTGCTTGGATTTCATCAAGACCTCCTCCTCCTCCTCCTCCACTTCCACTTCCACTTCCCTCTGA

Protein sequence

MDPHPITYERIRRRRRRGSCRGFRLSSRRLSVWKLRAKLGWVLRRILNSWRRSIVEIKKGGRSKGCSSSAAAQPRCECRLSSFRRSNSFYAEAIADCLDFIKTSSSSSSTSTSTSL

Homology

[Close]

BLAST of ClCG10G000110 vs. NCBI nr
Match: KAA0052904.1 (hypothetical protein E6C27_scaffold344G00100 [Cucumis melo var. makuwa] >TYK11358.1 hypothetical protein E5676_scaffold139G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 132.5 bits (332), Expect = 2.4e-27
Identity = 83/110 (75.45%), Postives = 90/110 (81.82%), Query Frame = 0


Query: 5   PITYERIRRRRRRGSCRGFRLSSRRLSVWKLRAKLGWVLRRILNSWRRSIVEIKKGGRSK 64
           PITYERIRRR RR SCRGFRL+SRRLSV KL++K GW+L RILN WRRSIV+IKK GRS 
Sbjct: 3   PITYERIRRRPRR-SCRGFRLTSRRLSVSKLQSKFGWLL-RILNWWRRSIVDIKKRGRSS 62

Query: 65  GCSSSAAAQPRCECRLSSFRRSNSFYAEAIADCLDFIKTSSSSSSTSTST 115
             SS++ AQ     RL SFRRSNSFYAEAIADCLDFIKTSSSS ST  ST
Sbjct: 63  KGSSNSGAQ---ATRLRSFRRSNSFYAEAIADCLDFIKTSSSSFSTPPST 107

[Close]

BLAST of ClCG10G000110 vs. NCBI nr
Match: KAE8637405.1 (hypothetical protein CSA_023382 [Cucumis sativus] >KGN55589.1 hypothetical protein Csa_011775 [Cucumis sativus])

HSP 1 Score: 129.4 bits (324), Expect = 2.0e-26
Identity = 78/105 (74.29%), Postives = 87/105 (82.86%), Query Frame = 0


Query: 5   PITYERIRRRRRRGSCRGFRLSSRRLSVWKLRAKLGWVLRRILNSWRRSIVEIKKGGRSK 64
           PITYERI RR+RR SCRGFRL+SRRLSV KLR+K GW+L RILN WRRSIVEIKK G S 
Sbjct: 3   PITYERITRRQRR-SCRGFRLTSRRLSVSKLRSKFGWLL-RILNRWRRSIVEIKKSGTSS 62

Query: 65  GCSSSAAAQPRCECRLSSFRRSNSFYAEAIADCLDFIKTSSSSSS 110
             SS++AAQ     +L SFRRSNSFYAEAIADCLDFIKT+SS S+
Sbjct: 63  KGSSNSAAQ---AAKLRSFRRSNSFYAEAIADCLDFIKTTSSFST 102

[Close]

BLAST of ClCG10G000110 vs. NCBI nr
Match: KAG6596289.1 (hypothetical protein SDJN03_09469, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 116.3 bits (290), Expect = 1.7e-22
Identity = 74/120 (61.67%), Postives = 85/120 (70.83%), Query Frame = 0


Query: 5   PITYERIRRRRRR-GSCRGFRLSSRRLSVWKLRAKLGWVLRRILNSWRRS------IVEI 64
           PITY+RIRRR      CRGF L SRR SV KLRAK  W+L RILN WRRS      I + 
Sbjct: 78  PITYQRIRRRSHGFARCRGFHLHSRRFSVSKLRAKFDWLL-RILNRWRRSYSWSIKINKA 137

Query: 65  KKGGRSKGCSSSAAAQPRC----ECRLSSFRRSNSFYAEAIADCLDFIKTSSSSSSTSTS 114
           ++GGRSK  ++++A  PRC    ECRL SFRRSNSFYAEAIADCLDFIK SS SS  ++S
Sbjct: 138 RRGGRSKASATASAEFPRCVDRGECRLRSFRRSNSFYAEAIADCLDFIKRSSVSSDRASS 196

[Close]

BLAST of ClCG10G000110 vs. NCBI nr
Match: KAG7027838.1 (hypothetical protein SDJN02_09015, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 116.3 bits (290), Expect = 1.7e-22
Identity = 74/120 (61.67%), Postives = 85/120 (70.83%), Query Frame = 0


Query: 5   PITYERIRRRRRR-GSCRGFRLSSRRLSVWKLRAKLGWVLRRILNSWRRS------IVEI 64
           PITY+RIRRR      CRGF L SRR SV KLRAK  W+L RILN WRRS      I + 
Sbjct: 3   PITYQRIRRRSHGFARCRGFHLHSRRFSVSKLRAKFDWLL-RILNRWRRSYSWSIKINKA 62

Query: 65  KKGGRSKGCSSSAAAQPRC----ECRLSSFRRSNSFYAEAIADCLDFIKTSSSSSSTSTS 114
           ++GGRSK  ++++A  PRC    ECRL SFRRSNSFYAEAIADCLDFIK SS SS  ++S
Sbjct: 63  RRGGRSKASATASAEFPRCVDRGECRLRSFRRSNSFYAEAIADCLDFIKRSSVSSDRASS 121

[Close]

BLAST of ClCG10G000110 vs. NCBI nr
Match: XP_022158286.1 (uncharacterized protein LOC111024807 [Momordica charantia])

HSP 1 Score: 97.1 bits (240), Expect = 1.1e-16
Identity = 68/107 (63.55%), Postives = 75/107 (70.09%), Query Frame = 0


Query: 5   PITYERI---RRRRRRGSCRGFRLSSRRLSVWKLRAKLGWVLRRILNSWRRSIVEIKKGG 64
           PI+YERI     RRR  S RGFRL+SRR SV +LRAK    L RILN WRRS   IKK  
Sbjct: 80  PISYERIIGKGSRRRSQSARGFRLNSRRFSVSRLRAKF-MCLLRILNKWRRS---IKKMR 139

Query: 65  RSKGCSSSAAAQPRCECRLSSFRRSNSFYAEAIADCLDFIKTSSSSS 109
           RSK   +  A  P C  RL SFRRSNSFYAEA+ADCLDFIKT++SSS
Sbjct: 140 RSK---AEVAEFPWCTDRLRSFRRSNSFYAEAMADCLDFIKTNTSSS 179

[Close]

BLAST of ClCG10G000110 vs. ExPASy TrEMBL
Match: A0A5A7UC85 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00100 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.1e-27
Identity = 83/110 (75.45%), Postives = 90/110 (81.82%), Query Frame = 0


Query: 5   PITYERIRRRRRRGSCRGFRLSSRRLSVWKLRAKLGWVLRRILNSWRRSIVEIKKGGRSK 64
           PITYERIRRR RR SCRGFRL+SRRLSV KL++K GW+L RILN WRRSIV+IKK GRS 
Sbjct: 3   PITYERIRRRPRR-SCRGFRLTSRRLSVSKLQSKFGWLL-RILNWWRRSIVDIKKRGRSS 62

Query: 65  GCSSSAAAQPRCECRLSSFRRSNSFYAEAIADCLDFIKTSSSSSSTSTST 115
             SS++ AQ     RL SFRRSNSFYAEAIADCLDFIKTSSSS ST  ST
Sbjct: 63  KGSSNSGAQ---ATRLRSFRRSNSFYAEAIADCLDFIKTSSSSFSTPPST 107

[Close]

BLAST of ClCG10G000110 vs. ExPASy TrEMBL
Match: A0A0A0L3I7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G000130 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 9.6e-27
Identity = 78/105 (74.29%), Postives = 87/105 (82.86%), Query Frame = 0


Query: 5   PITYERIRRRRRRGSCRGFRLSSRRLSVWKLRAKLGWVLRRILNSWRRSIVEIKKGGRSK 64
           PITYERI RR+RR SCRGFRL+SRRLSV KLR+K GW+L RILN WRRSIVEIKK G S 
Sbjct: 3   PITYERITRRQRR-SCRGFRLTSRRLSVSKLRSKFGWLL-RILNRWRRSIVEIKKSGTSS 62

Query: 65  GCSSSAAAQPRCECRLSSFRRSNSFYAEAIADCLDFIKTSSSSSS 110
             SS++AAQ     +L SFRRSNSFYAEAIADCLDFIKT+SS S+
Sbjct: 63  KGSSNSAAQ---AAKLRSFRRSNSFYAEAIADCLDFIKTTSSFST 102

[Close]

BLAST of ClCG10G000110 vs. ExPASy TrEMBL
Match: A0A6J1E0I4 (uncharacterized protein LOC111024807 OS=Momordica charantia OX=3673 GN=LOC111024807 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 5.3e-17
Identity = 68/107 (63.55%), Postives = 75/107 (70.09%), Query Frame = 0


Query: 5   PITYERI---RRRRRRGSCRGFRLSSRRLSVWKLRAKLGWVLRRILNSWRRSIVEIKKGG 64
           PI+YERI     RRR  S RGFRL+SRR SV +LRAK    L RILN WRRS   IKK  
Sbjct: 80  PISYERIIGKGSRRRSQSARGFRLNSRRFSVSRLRAKF-MCLLRILNKWRRS---IKKMR 139

Query: 65  RSKGCSSSAAAQPRCECRLSSFRRSNSFYAEAIADCLDFIKTSSSSS 109
           RSK   +  A  P C  RL SFRRSNSFYAEA+ADCLDFIKT++SSS
Sbjct: 140 RSK---AEVAEFPWCTDRLRSFRRSNSFYAEAMADCLDFIKTNTSSS 179

[Close]

BLAST of ClCG10G000110 vs. ExPASy TrEMBL
Match: A0A165XTS4 (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014121 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.7e-10
Identity = 53/115 (46.09%), Postives = 70/115 (60.87%), Query Frame = 0


Query: 6   ITYERIRRRRR--RGSCRGFRLSSRRLSVWKLRAKLGWVLRRILNSWR------RSIVEI 65
           + Y R+R  RR   G CRGFRL++RR SV++LRAK  ++ + +   WR      R+I   
Sbjct: 5   LKYNRVRDHRRSFHGPCRGFRLNARRFSVYRLRAKFYYLFKILSGRWRSWYKHARNICHS 64

Query: 66  KKGGRSKGCSSSAAAQPRCECRLSSFRRSNSFYAEAIADCLDFIKTSSSSSSTST 113
            +   S+    S  A PR + RL SF RSNSFY+EAIADCL+FIK SS S   +T
Sbjct: 65  HRKKESRE-FVSRNAYPRVQNRLRSFGRSNSFYSEAIADCLEFIKRSSVSVDENT 118

[Close]

BLAST of ClCG10G000110 vs. ExPASy TrEMBL
Match: A0A2G3D6M2 (Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_04959 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.0e-08
Identity = 52/123 (42.28%), Postives = 65/123 (52.85%), Query Frame = 0


Query: 6   ITYERIRRRRRRGSCRGFRLSSRRLSVWKLRAKLGWVLRRILNSWRRSIVEIKK------ 65
           ++Y R+ RR   G+ RGF+L+SRR SV +LRAK  ++ R    SWR S    ++      
Sbjct: 4   MSYNRVGRRSCCGTTRGFKLNSRRFSVQRLRAKFMYLYRLFCRSWRSSYKYTRRLLKFSD 63

Query: 66  ----------GGRSKGCSSSAAAQ-----PRCECRLSSFRRSNSFYAEAIADCLDFIKTS 108
                     GG  K    S  A         E RL S+ RSNSFYAEAIADCLDFIK +
Sbjct: 64  KKVSSHDQSYGGNCKKNLVSEYADCGMYGNNYEYRLKSYGRSNSFYAEAIADCLDFIKRN 123

The following BLAST results are available for this feature:

BLAST of ClCG10G000110 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052904.1	2.4e-27	75.45	hypothetical protein E6C27_scaffold344G00100 [Cucumis melo var. makuwa] >TYK1135...	[more]
KAE8637405.1	2.0e-26	74.29	hypothetical protein CSA_023382 [Cucumis sativus] >KGN55589.1 hypothetical prote...	[more]
KAG6596289.1	1.7e-22	61.67	hypothetical protein SDJN03_09469, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7027838.1	1.7e-22	61.67	hypothetical protein SDJN02_09015, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022158286.1	1.1e-16	63.55	uncharacterized protein LOC111024807 [Momordica charantia]	[more]

BLAST of ClCG10G000110 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG10G000110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UC85	1.1e-27	75.45	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0L3I7	9.6e-27	74.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G000130 PE=4 SV=1	[more]
A0A6J1E0I4	5.3e-17	63.55	uncharacterized protein LOC111024807 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A165XTS4	1.7e-10	46.09	Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014121 ...	[more]
A0A2G3D6M2	2.0e-08	42.28	Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_04959 PE=4 SV=1	[more]

BLAST of ClCG10G000110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34996	OS06G0327400 PROTEIN	coord: 4..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G000110.1	ClCG10G000110.1	mRNA