ClCG09G001530 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG09G001530
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionCytochrome c oxidase subunit 1
LocationCG_Chr09: 1438102 .. 1439418 (+)
RNA-Seq ExpressionClCG09G001530
SyntenyClCG09G001530
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGAAAAAAACGAGTATCTAGGCATGGTTTATGCCATGATCAGTATAGGTGTTCTTAGATTTCTTGTTTGGGCTCATCATATGTTTACTATGGGCTTAGACGTTGATACCCGTGCCTACTTCACCGTTGCTACCATGATCATAGCAGTCCTCACTAGAAACAAAATCTTTAGTTGGATCGCTACCATGGGGGAGGGGGTGTTCGATACAATACAAAACTCCCATCTTATTTGTTGTAGGGTCATCTTTTTGTTCACCATAGGAGGACTCATTGGAATAGTCCCGGCAATTCAAGGCTAGACATTGTTCTACATAATACTTATTATGTGGTTGCACATTTCCATTATGTACTTTCTATGGGAGCCATTTTTGCTTTATTTGCAAGTGGGTAAAATCTTTGGTCGGACATACCCTGAAACTTTAAGTCAAATCCATTTTTGGATCACTTTTTTCGGGGTTAATGCGAAAAAACTTCTAAAACTATAAGGACTAACTTGAAATTAAGCCATTGAAACATTTTGGACCTATAAGATTTTTTCGTTTTTGAGTAGATTCAAGCCTTTTAACTTTTTGGCCGAAGTCATATGCCTTTAATCGTTTGTGTATGTTATAGATGGCTCGAAACATAGAGACACAGAGACCAAATTCAGTACTTTACCCAATATTTATGTCTGTTGAATCAACATGGAATCCACACACAAAAGAGAGAGTGAATAATAATTATTAGATGATTAGATCCATTATGGTCAGTGGTAGAATAAAGAATCTCTATGTTGTATTTGTTTATAGGTGATAATGGAATTGAAATGTTATTACAATGACTAGTAAAGTTTGTTTACTTTGATTTCAATTTTAGTTTCTATATTTTCAACAAATCTTAAATTATTGTATATTAGCATTTTATTGTTGTTCCAAAAACTTTTTTTTTCGTTATATATTAGCATTTTTACAATAAATCTTGAAAACCTACTTGCATATTATGTTTTGTTTCATAAAAATTATTATTATTCTTTAAATAATTTTCATAAATGTTAATTTTAGTGGACTCCAATAAGATCTCTTGACCATTAAAATTTGAGTACCAAAATTGAACAAACCCATACTTTGGGAATCAAAATAATATTTGAACAAATCATGTTGGTTGTAGATTATGCCTTATGGGGACACTGAACAACTAAGCATCTGAAGTTCCCGCCCCACCGCCTGCCGACAGCTTCAGAACCGCCGATCACTGCATTTTCCGGCAGCGATCGGAATCGGAAACCGAAAATTAGGGCATTTATCGAGGACGAGGATGAATCTTTGGTCAACTAA

mRNA sequence

ATGAAGGAAAAAAACGAGTATCTAGGCATGGTTTATGCCATGATCAGTATAGGTGTTCTTAGATTTCTTGTTTGGGCTCATCATATGTTTACTATGGGCTTAGACGTTGATACCCGTGCCTACTTCACCGTTGCTACCATGATCATAGCAGTCCTCACTAGAAACAAAATCTTTAGTTGGATCGCTACCATGGGGGAGGGGATGGCTCGAAACATAGAGACACAGAGACCAAATTCACATCTGAAGTTCCCGCCCCACCGCCTGCCGACAGCTTCAGAACCGCCGATCACTGCATTTTCCGGCAGCGATCGGAATCGGAAACCGAAAATTAGGGCATTTATCGAGGACGAGGATGAATCTTTGGTCAACTAA

Coding sequence (CDS)

ATGAAGGAAAAAAACGAGTATCTAGGCATGGTTTATGCCATGATCAGTATAGGTGTTCTTAGATTTCTTGTTTGGGCTCATCATATGTTTACTATGGGCTTAGACGTTGATACCCGTGCCTACTTCACCGTTGCTACCATGATCATAGCAGTCCTCACTAGAAACAAAATCTTTAGTTGGATCGCTACCATGGGGGAGGGGATGGCTCGAAACATAGAGACACAGAGACCAAATTCACATCTGAAGTTCCCGCCCCACCGCCTGCCGACAGCTTCAGAACCGCCGATCACTGCATTTTCCGGCAGCGATCGGAATCGGAAACCGAAAATTAGGGCATTTATCGAGGACGAGGATGAATCTTTGGTCAACTAA

Protein sequence

MKEKNEYLGMVYAMISIGVLRFLVWAHHMFTMGLDVDTRAYFTVATMIIAVLTRNKIFSWIATMGEGMARNIETQRPNSHLKFPPHRLPTASEPPITAFSGSDRNRKPKIRAFIEDEDESLVN
Homology
BLAST of ClCG09G001530 vs. NCBI nr
Match: ABN50285.1 (cytochrome oxidase subunit I, partial [Ephedra fragilis])

HSP 1 Score: 105.5 bits (262), Expect = 3.3e-19
Identity = 53/66 (80.30%), Postives = 57/66 (86.36%), Query Frame = 0

Query: 7   YLGMVYAMISIGVLRFLVWAHHMFTMGLDVDTRAYFTVATMIIAVLTRNKIFSWIATMGE 66
           YLGM+YAMISIGVL F+VWAHHMFT+GLDVDTRAYFT ATMIIAV T  KIFSWIATM  
Sbjct: 233 YLGMIYAMISIGVLEFMVWAHHMFTVGLDVDTRAYFTAATMIIAVPTGIKIFSWIATMWG 292

Query: 67  GMARNI 73
           G  R+I
Sbjct: 293 GSIRSI 298

BLAST of ClCG09G001530 vs. NCBI nr
Match: CAE46638.2 (cytochrome oxidase, subunit I [Solanum commersonii])

HSP 1 Score: 105.5 bits (262), Expect = 3.3e-19
Identity = 54/61 (88.52%), Postives = 55/61 (90.16%), Query Frame = 0

Query: 7   YLGMVYAMISIGVLRFLVWAHHMFTMGLDVDTRAYFTVATMIIAVLTRNKIFSWIATMGE 66
           YLGMVYAMISIGVL FLVWAHHMFT+GLDVDTRAYFT ATMIIAV T  KIFSWIATM E
Sbjct: 272 YLGMVYAMISIGVLGFLVWAHHMFTVGLDVDTRAYFTAATMIIAVPTGIKIFSWIATMWE 331

Query: 67  G 68
           G
Sbjct: 332 G 332

BLAST of ClCG09G001530 vs. NCBI nr
Match: ABN50276.1 (cytochrome oxidase subunit I, partial [Ephedra intermedia])

HSP 1 Score: 105.1 bits (261), Expect = 4.3e-19
Identity = 54/66 (81.82%), Postives = 57/66 (86.36%), Query Frame = 0

Query: 7   YLGMVYAMISIGVLRFLVWAHHMFTMGLDVDTRAYFTVATMIIAVLTRNKIFSWIATMGE 66
           YLGMVYAMISIGVL F+VWAHHMFT+GLDVDTRAYFT ATMIIAV T  KIFSWIATM  
Sbjct: 232 YLGMVYAMISIGVLGFMVWAHHMFTVGLDVDTRAYFTAATMIIAVPTGIKIFSWIATMWG 291

Query: 67  GMARNI 73
           G  R+I
Sbjct: 292 GSIRSI 297

BLAST of ClCG09G001530 vs. NCBI nr
Match: ABN50284.1 (cytochrome oxidase subunit I, partial [Ephedra tweediana])

HSP 1 Score: 105.1 bits (261), Expect = 4.3e-19
Identity = 54/66 (81.82%), Postives = 57/66 (86.36%), Query Frame = 0

Query: 7   YLGMVYAMISIGVLRFLVWAHHMFTMGLDVDTRAYFTVATMIIAVLTRNKIFSWIATMGE 66
           YLGMVYAMISIGVL F+VWAHHMFT+GLDVDTRAYFT ATMIIAV T  KIFSWIATM  
Sbjct: 232 YLGMVYAMISIGVLGFMVWAHHMFTVGLDVDTRAYFTAATMIIAVPTGIKIFSWIATMWG 291

Query: 67  GMARNI 73
           G  R+I
Sbjct: 292 GSIRSI 297

BLAST of ClCG09G001530 vs. NCBI nr
Match: AAD01679.1 (cytochrome c oxidase, partial [Ephedra distachya])

HSP 1 Score: 105.1 bits (261), Expect = 4.3e-19
Identity = 54/66 (81.82%), Postives = 57/66 (86.36%), Query Frame = 0

Query: 7   YLGMVYAMISIGVLRFLVWAHHMFTMGLDVDTRAYFTVATMIIAVLTRNKIFSWIATMGE 66
           YLGMVYAMISIGVL F+VWAHHMFT+GLDVDTRAYFT ATMIIAV T  KIFSWIATM  
Sbjct: 237 YLGMVYAMISIGVLGFMVWAHHMFTVGLDVDTRAYFTAATMIIAVPTGIKIFSWIATMWG 296

Query: 67  GMARNI 73
           G  R+I
Sbjct: 297 GSIRSI 302

BLAST of ClCG09G001530 vs. ExPASy Swiss-Prot
Match: Q33439 (Cytochrome c oxidase subunit 1 (Fragment) OS=Ephedra equisetifolia OX=49760 GN=COX1 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 5.6e-22
Identity = 54/66 (81.82%), Postives = 57/66 (86.36%), Query Frame = 0

Query: 7   YLGMVYAMISIGVLRFLVWAHHMFTMGLDVDTRAYFTVATMIIAVLTRNKIFSWIATMGE 66
           YLGMVYAMISIGVL F+VWAHHMFT+GLDVDTRAYFT ATMIIAV T  KIFSWIATM  
Sbjct: 66  YLGMVYAMISIGVLGFMVWAHHMFTVGLDVDTRAYFTAATMIIAVPTGIKIFSWIATMWG 125

Query: 67  GMARNI 73
           G  R+I
Sbjct: 126 GSIRSI 131

BLAST of ClCG09G001530 vs. ExPASy Swiss-Prot
Match: P68540 (Cytochrome c oxidase subunit 1 OS=Aegilops columnaris OX=4493 GN=COX1 PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.8e-21
Identity = 53/61 (86.89%), Postives = 54/61 (88.52%), Query Frame = 0

Query: 7   YLGMVYAMISIGVLRFLVWAHHMFTMGLDVDTRAYFTVATMIIAVLTRNKIFSWIATMGE 66
           YLGMVYAMISIGVL FLVWAHHMFT+GLDVDTRAYFT ATMIIAV T  KIFSWIATM  
Sbjct: 272 YLGMVYAMISIGVLGFLVWAHHMFTVGLDVDTRAYFTAATMIIAVPTGIKIFSWIATMWG 331

Query: 67  G 68
           G
Sbjct: 332 G 332

BLAST of ClCG09G001530 vs. ExPASy Swiss-Prot
Match: P60620 (Cytochrome c oxidase subunit 1 OS=Arabidopsis thaliana OX=3702 GN=COX1 PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.8e-21
Identity = 53/61 (86.89%), Postives = 54/61 (88.52%), Query Frame = 0

Query: 7   YLGMVYAMISIGVLRFLVWAHHMFTMGLDVDTRAYFTVATMIIAVLTRNKIFSWIATMGE 66
           YLGMVYAMISIGVL FLVWAHHMFT+GLDVDTRAYFT ATMIIAV T  KIFSWIATM  
Sbjct: 272 YLGMVYAMISIGVLGFLVWAHHMFTVGLDVDTRAYFTAATMIIAVPTGIKIFSWIATMWG 331

Query: 67  G 68
           G
Sbjct: 332 G 332

BLAST of ClCG09G001530 vs. ExPASy Swiss-Prot
Match: P24794 (Cytochrome c oxidase subunit 1 OS=Beta vulgaris OX=161934 GN=COX1 PE=3 SV=2)

HSP 1 Score: 102.8 bits (255), Expect = 2.8e-21
Identity = 53/61 (86.89%), Postives = 54/61 (88.52%), Query Frame = 0

Query: 7   YLGMVYAMISIGVLRFLVWAHHMFTMGLDVDTRAYFTVATMIIAVLTRNKIFSWIATMGE 66
           YLGMVYAMISIGVL FLVWAHHMFT+GLDVDTRAYFT ATMIIAV T  KIFSWIATM  
Sbjct: 272 YLGMVYAMISIGVLGFLVWAHHMFTVGLDVDTRAYFTAATMIIAVPTGIKIFSWIATMWG 331

Query: 67  G 68
           G
Sbjct: 332 G 332

BLAST of ClCG09G001530 vs. ExPASy Swiss-Prot
Match: P08742 (Cytochrome c oxidase subunit 1 OS=Zea mays OX=4577 GN=COX1 PE=3 SV=2)

HSP 1 Score: 102.8 bits (255), Expect = 2.8e-21
Identity = 53/61 (86.89%), Postives = 54/61 (88.52%), Query Frame = 0

Query: 7   YLGMVYAMISIGVLRFLVWAHHMFTMGLDVDTRAYFTVATMIIAVLTRNKIFSWIATMGE 66
           YLGMVYAMISIGVL FLVWAHHMFT+GLDVDTRAYFT ATMIIAV T  KIFSWIATM  
Sbjct: 272 YLGMVYAMISIGVLGFLVWAHHMFTVGLDVDTRAYFTAATMIIAVPTGIKIFSWIATMWG 331

Query: 67  G 68
           G
Sbjct: 332 G 332

BLAST of ClCG09G001530 vs. ExPASy TrEMBL
Match: A0A452YPM1 (Cytochrome c oxidase subunit 1 OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 5.4e-20
Identity = 55/61 (90.16%), Postives = 55/61 (90.16%), Query Frame = 0

Query: 7   YLGMVYAMISIGVLRFLVWAHHMFTMGLDVDTRAYFTVATMIIAVLTRNKIFSWIATMGE 66
           YLGMVYAMISIGVL FLVWAHHMFTMGLDVDTRAYFT ATMIIAV TR KIFSWIATM  
Sbjct: 331 YLGMVYAMISIGVLGFLVWAHHMFTMGLDVDTRAYFTAATMIIAVPTRIKIFSWIATMWG 390

Query: 67  G 68
           G
Sbjct: 391 G 391

BLAST of ClCG09G001530 vs. ExPASy TrEMBL
Match: B6RAP6 (Cytochrome c oxidase subunit 1 (Fragment) OS=Ephedra fragilis OX=50295 GN=coxI PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.6e-19
Identity = 53/66 (80.30%), Postives = 57/66 (86.36%), Query Frame = 0

Query: 7   YLGMVYAMISIGVLRFLVWAHHMFTMGLDVDTRAYFTVATMIIAVLTRNKIFSWIATMGE 66
           YLGM+YAMISIGVL F+VWAHHMFT+GLDVDTRAYFT ATMIIAV T  KIFSWIATM  
Sbjct: 233 YLGMIYAMISIGVLEFMVWAHHMFTVGLDVDTRAYFTAATMIIAVPTGIKIFSWIATMWG 292

Query: 67  GMARNI 73
           G  R+I
Sbjct: 293 GSIRSI 298

BLAST of ClCG09G001530 vs. ExPASy TrEMBL
Match: Q70G81 (Cytochrome c oxidase subunit 1 OS=Solanum commersonii OX=4109 GN=cox1 PE=3 SV=2)

HSP 1 Score: 105.5 bits (262), Expect = 1.6e-19
Identity = 54/61 (88.52%), Postives = 55/61 (90.16%), Query Frame = 0

Query: 7   YLGMVYAMISIGVLRFLVWAHHMFTMGLDVDTRAYFTVATMIIAVLTRNKIFSWIATMGE 66
           YLGMVYAMISIGVL FLVWAHHMFT+GLDVDTRAYFT ATMIIAV T  KIFSWIATM E
Sbjct: 272 YLGMVYAMISIGVLGFLVWAHHMFTVGLDVDTRAYFTAATMIIAVPTGIKIFSWIATMWE 331

Query: 67  G 68
           G
Sbjct: 332 G 332

BLAST of ClCG09G001530 vs. ExPASy TrEMBL
Match: D0PPP4 (Cytochrome c oxidase subunit 1 (Fragment) OS=Asplenium wrightii OX=78456 GN=coxI PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 2.1e-19
Identity = 54/66 (81.82%), Postives = 57/66 (86.36%), Query Frame = 0

Query: 7   YLGMVYAMISIGVLRFLVWAHHMFTMGLDVDTRAYFTVATMIIAVLTRNKIFSWIATMGE 66
           YLGMVYAMISIGVL F+VWAHHMFT+GLDVDTRAYFT ATMIIAV T  KIFSWIATM  
Sbjct: 238 YLGMVYAMISIGVLGFMVWAHHMFTVGLDVDTRAYFTAATMIIAVPTGIKIFSWIATMWG 297

Query: 67  GMARNI 73
           G  R+I
Sbjct: 298 GSIRSI 303

BLAST of ClCG09G001530 vs. ExPASy TrEMBL
Match: B6RAP8 (Cytochrome c oxidase subunit 1 (Fragment) OS=Ephedra trifurca OX=39583 GN=coxI PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 2.1e-19
Identity = 54/66 (81.82%), Postives = 57/66 (86.36%), Query Frame = 0

Query: 7   YLGMVYAMISIGVLRFLVWAHHMFTMGLDVDTRAYFTVATMIIAVLTRNKIFSWIATMGE 66
           YLGMVYAMISIGVL F+VWAHHMFT+GLDVDTRAYFT ATMIIAV T  KIFSWIATM  
Sbjct: 231 YLGMVYAMISIGVLGFMVWAHHMFTVGLDVDTRAYFTAATMIIAVPTGIKIFSWIATMWG 290

Query: 67  GMARNI 73
           G  R+I
Sbjct: 291 GSIRSI 296

BLAST of ClCG09G001530 vs. TAIR 10
Match: ATMG01360.1 (cytochrome oxidase )

HSP 1 Score: 102.8 bits (255), Expect = 2.0e-22
Identity = 53/61 (86.89%), Postives = 54/61 (88.52%), Query Frame = 0

Query: 7   YLGMVYAMISIGVLRFLVWAHHMFTMGLDVDTRAYFTVATMIIAVLTRNKIFSWIATMGE 66
           YLGMVYAMISIGVL FLVWAHHMFT+GLDVDTRAYFT ATMIIAV T  KIFSWIATM  
Sbjct: 272 YLGMVYAMISIGVLGFLVWAHHMFTVGLDVDTRAYFTAATMIIAVPTGIKIFSWIATMWG 331

Query: 67  G 68
           G
Sbjct: 332 G 332

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
ABN50285.13.3e-1980.30cytochrome oxidase subunit I, partial [Ephedra fragilis][more]
CAE46638.23.3e-1988.52cytochrome oxidase, subunit I [Solanum commersonii][more]
ABN50276.14.3e-1981.82cytochrome oxidase subunit I, partial [Ephedra intermedia][more]
ABN50284.14.3e-1981.82cytochrome oxidase subunit I, partial [Ephedra tweediana][more]
AAD01679.14.3e-1981.82cytochrome c oxidase, partial [Ephedra distachya][more]
Match NameE-valueIdentityDescription
Q334395.6e-2281.82Cytochrome c oxidase subunit 1 (Fragment) OS=Ephedra equisetifolia OX=49760 GN=C... [more]
P685402.8e-2186.89Cytochrome c oxidase subunit 1 OS=Aegilops columnaris OX=4493 GN=COX1 PE=3 SV=1[more]
P606202.8e-2186.89Cytochrome c oxidase subunit 1 OS=Arabidopsis thaliana OX=3702 GN=COX1 PE=3 SV=1[more]
P247942.8e-2186.89Cytochrome c oxidase subunit 1 OS=Beta vulgaris OX=161934 GN=COX1 PE=3 SV=2[more]
P087422.8e-2186.89Cytochrome c oxidase subunit 1 OS=Zea mays OX=4577 GN=COX1 PE=3 SV=2[more]
Match NameE-valueIdentityDescription
A0A452YPM15.4e-2090.16Cytochrome c oxidase subunit 1 OS=Aegilops tauschii subsp. strangulata OX=200361... [more]
B6RAP61.6e-1980.30Cytochrome c oxidase subunit 1 (Fragment) OS=Ephedra fragilis OX=50295 GN=coxI P... [more]
Q70G811.6e-1988.52Cytochrome c oxidase subunit 1 OS=Solanum commersonii OX=4109 GN=cox1 PE=3 SV=2[more]
D0PPP42.1e-1981.82Cytochrome c oxidase subunit 1 (Fragment) OS=Asplenium wrightii OX=78456 GN=coxI... [more]
B6RAP82.1e-1981.82Cytochrome c oxidase subunit 1 (Fragment) OS=Ephedra trifurca OX=39583 GN=coxI P... [more]
Match NameE-valueIdentityDescription
ATMG01360.12.0e-2286.89cytochrome oxidase [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000883Cytochrome c oxidase subunit IPRINTSPR01165CYCOXIDASEIcoord: 18..33
score: 71.93
coord: 42..63
score: 67.7
IPR000883Cytochrome c oxidase subunit IPFAMPF00115COX1coord: 7..68
e-value: 3.9E-16
score: 58.9
IPR000883Cytochrome c oxidase subunit IPANTHERPTHR10422CYTOCHROME C OXIDASE SUBUNIT 1coord: 5..71
IPR036927Cytochrome c oxidase-like, subunit I superfamilyGENE3D1.20.210.10coord: 2..99
e-value: 1.3E-24
score: 88.5
IPR036927Cytochrome c oxidase-like, subunit I superfamilySUPERFAMILY81442Cytochrome c oxidase subunit I-likecoord: 3..68
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..108
IPR023616Cytochrome c oxidase-like, subunit I domainPROSITEPS50855COX1coord: 1..77
score: 15.142069

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG09G001530.2ClCG09G001530.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0022900 electron transport chain
biological_process GO:0015990 electron transport coupled proton transport
biological_process GO:0006119 oxidative phosphorylation
biological_process GO:0009060 aerobic respiration
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0045277 respiratory chain complex IV
molecular_function GO:0004129 cytochrome-c oxidase activity
molecular_function GO:0020037 heme binding
molecular_function GO:0046872 metal ion binding