ClCG08G001980 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG08G001980
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr08: 4121654 .. 4123462 (-)
RNA-Seq Expression	ClCG08G001980
Synteny	ClCG08G001980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTACATCTAGTAAGTTTGTAGCCACCAAAGTAAGCAAGAATGCAATACCACGAATCCTAAAATGGACCGTCAAGTTCCATCCTTTAAGTTGTTGGATAGGAATTTATTCCAACTGAAAAAGGTAATGAATCGTTTAGAGTTACCTATACGATCGTTTAGATTAACCTACACAATTGTTGAGAGTCATCTTCACGATTGTTTAGAGTAATCTACATGATCGCCTAGTTAATAGTAAGCAATCGTTTAGATTTAAACGATCACCTAGTTTCTCTAAATGATCATGTAGTAAAATCTAAACGATTACCTACTCAAGATAAGTGATCGTTTATAGTAATCTAAGCGATCACTTAGTTAAGAATAATAGATTGTTTAGAATAATCTACACGATCGCTTAGTAGTCGGTTGTTTTCAATATGTATTGACTTGTTCTCACCGTTTACATTACAAACAATTATTATGGTGAGACCTATGTCTACACTAGAGGAAATAAAGTACAAGGAGGATAGAATAAGAAGGATTGAGTTGATGCTAGGTGTCAACACCACATTAAGAGATCAGCCTTAAGTTGACACTGAGACCAAACATCACGAGTCCTCTCACAAAGAACAAGTCGAGCAGCCTATGACAAAGCATCATATTAATGACAGTGAACCCCATCGGGCACACGAAGAACAAGTGAACACCCTACCACTGAGACAGAAACATGCATACCGGGTTTGACTAGTGGTCAAAGGGGTAAAAAAGGTGCGCTAAGTCTTCAAAGAAGCACTCAGGCCAAGTCCTCGAGAAGGCACAAGCACTCAAAGTCTTATAAGGTGCTGAGAGAGGAAATATTTGAAGTTCGTAAGGTTTTGGTGAACTTGAAGACGACGATTCGTTAGCAGCACGAACAATTAAGACAACAAATAGAGGATGTGAAGCTGTTTCTTCAGAATTTATGTCAAGTTAGAAATCTTATTCATCCTATGGTTTAGAAGTTCTATGCGATCGTTTAGAATTTCGATGCAATCGTTTAAAATTTCTATACAATCGTTTAGGATATTTATGCGATTTCTTAGGATTTTTTATGTGATGGATTAGGAATGGCTATGTGATCGCATAGTGTGCGATCGTTTAGTAATGTCTATGCGATCGTTTAGATTTCCTATGCGATCGCTTAGGATTTTCTATACGATCTTTTAGGAATTTTTATGCAATTGTTAGATTTCCTACGCAATCGTTAATTACTTTCAATGCAATCATTTATCTAATACTTTATGTTCCTTTGTCTGATTCAGGATAGCAACAAAGAAGATAATCAGAGAAGTATCCCTGATGACGGCTCTGATGTCGATAAAACGGGTAAGCATGGGGAACATGAAGGGGGTGGTGGGGATGGTCAGATTGAGATGAATGAAGGGAATGGTAAAAGGCGGTCTGAGATGAATCCTATCGAAGGGAACCAGGATGATGGGGAGGAACTGGCAATGGTGGTTGTTAACCAAATTGTCGAGCAAAACACGGATAAGCAGCCAGCCGAACTTCAAATAACCGTGCACCCTGGGGAAGAAACCATAGGGGAGACAAGCATGGTTGAACCCATCACCACACAGCCACCACTACCCTGTATAAGAAGTCCCACAATTGAACCCCTCACCACACATCTGCTACCCTCTATACAAGAAATCCTCACACTTGAACCACTCACCACAGAACCACCACCCCTGTTGAAGAGCTCCCCCCATACAAGTGCTCCCCACTCAACCGTTCAATATGTGGAGCCTTTTGGACTTGAATGTGACAATCGAACCACAAGAACAGGCTGA

mRNA sequence

ATGTCTACATCTAGTAAGTTTGTAGCCACCAAAAGAAGTATCCCTGATGACGGCTCTGATGTCGATAAAACGGGTAAGCATGGGGAACATGAAGGGGGTGGTGGGGATGGTCAGATTGAGATGAATGAAGGGAATGGTAAAAGGCGGTCTGAGATGAATCCTATCGAAGGGAACCAGGATGATGGGGAGGAACTGGCAATGGTGGTTGTTAACCAAATTGTCGAGCAAAACACGGATAAGCAGCCAGCCGAACTTCAAATAACCGTGCACCCTGGGGAAGAAACCATAGGGGAGACAAGCATGGTTGAACCCATCACCACACAGCCACCACTACCCTGTATAAGAAGTCCCACAATTGAACCCCTCACCACACATCTGCTACCCTCTATACAAGAAATCCTCACACTTGAACCACTCACCACAGAACCACCACCCCTGTTGAAGAGCTCCCCCCATACAAGTGCTCCCCACTCAACCGTTCAATATGTGGAGCCTTTTGGACTTGAATGTGACAATCGAACCACAAGAACAGGCTGA

Coding sequence (CDS)

ATGTCTACATCTAGTAAGTTTGTAGCCACCAAAAGAAGTATCCCTGATGACGGCTCTGATGTCGATAAAACGGGTAAGCATGGGGAACATGAAGGGGGTGGTGGGGATGGTCAGATTGAGATGAATGAAGGGAATGGTAAAAGGCGGTCTGAGATGAATCCTATCGAAGGGAACCAGGATGATGGGGAGGAACTGGCAATGGTGGTTGTTAACCAAATTGTCGAGCAAAACACGGATAAGCAGCCAGCCGAACTTCAAATAACCGTGCACCCTGGGGAAGAAACCATAGGGGAGACAAGCATGGTTGAACCCATCACCACACAGCCACCACTACCCTGTATAAGAAGTCCCACAATTGAACCCCTCACCACACATCTGCTACCCTCTATACAAGAAATCCTCACACTTGAACCACTCACCACAGAACCACCACCCCTGTTGAAGAGCTCCCCCCATACAAGTGCTCCCCACTCAACCGTTCAATATGTGGAGCCTTTTGGACTTGAATGTGACAATCGAACCACAAGAACAGGCTGA

Protein sequence

MSTSSKFVATKRSIPDDGSDVDKTGKHGEHEGGGGDGQIEMNEGNGKRRSEMNPIEGNQDDGEELAMVVVNQIVEQNTDKQPAELQITVHPGEETIGETSMVEPITTQPPLPCIRSPTIEPLTTHLLPSIQEILTLEPLTTEPPPLLKSSPHTSAPHSTVQYVEPFGLECDNRTTRTG

Homology

The following BLAST results are available for this feature:

BLAST of ClCG08G001980 vs.


Match Name	E-value	Identity	Description

BLAST of ClCG08G001980 vs.


Match Name	E-value	Identity	Description

BLAST of ClCG08G001980 vs.


Match Name	E-value	Identity	Description

BLAST of ClCG08G001980 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG08G001980.1	ClCG08G001980.1	mRNA