ClCG07G012030 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG07G012030
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	DNA-directed RNA polymerase subunit beta
Location	CG_Chr07: 28371747 .. 28373248 (+)
RNA-Seq Expression	ClCG07G012030
Synteny	ClCG07G012030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTCCTAAAGAAGATATGTCTTATTTGCAAAATTGAAGATCCGTTGATATGCTTTTCAATCCATTAGGAGTCCTCTCACGAATGAATGTAGGACAGATATTTGAGTGCTGATCACTCGGGTTAGCGGAGAGTTTGCTAGATAGACATTATCTAGTAGTACCTTTTGGTGAGAGATATGTACAAAAGGCTTCTAGAAAACTAGTTTTTTTTTCTCAATTATATGAAGCTAGTAAGCATACAACGAGTTCATGGATATTTAAACCCAAGTACCTGGGAAAAAACAGAATATTTGATGGAAGAACGAAAACTCTGAACAACCTGTTATAATAGGAAAGTCTTATATTTTGATATTAATTCATCAAGTTGACATCATGCACTTGTTACATAACAACCCCTTAGAGTAGCAAGGTGGACAATGAGTGAGAGAAAGGGAGGTTTCAACATTTAATTTAAACTTGATTTTTTAATACTCACTCCAATTTTGTTTGGTGCTTATGTCTATTAATTAATTTAAAAGAATTACAATTAATTTATCTTTCATTACTTTTTCATCACTATTAAAATTAGCTACAAAATATCTTCACATCATATATTCTAAATTGGCTATCTAAAAAGACAACTTTAAATACAAAAATAGTATTATTAAAAATTCAGTGGTAAAATAGTAAAACAATAAAATTTAAAGACAAAATGAAAATAAAATTTACAATGCTAACCAACGTAACTTAGGGATTAGATAAAAACTAAACTTAAAACTTAAAGATAAAAAGTGTAATATGGAAGTATATTTTTTTAATGTTATTATTATTATTTATTTATTTTGAATTGAGAGACACATGAGACATTTAACCTAAAATGTATATTATAATGTTTGGTTGTAAATAAGGGAAATGAAAAATAGAGGGTAAGGTTTAATTGATGAGAGAGAGAGGAGGAAGAGAAGTTGAAATGGAAACACACCGAGGGAATTTATTATTTTAAAAAACTTCAAATTGGATTAATAATAAAGCCTGTCGACAGGGTGACGAACAATCATAAAATGAAGATGNCCTTAAGTTTTGCATTTACTTTCTATTTGGTCCTTCGATTTCAAAATGTTACGTTTTTACCTTTGAGTTTCATTTCAATTTGGTCCCTAGGGTGAAATCAAAATAGGCAATAAGGTAGTAGGAAGACATGAAAATAAATGTATTGTTTCAAAAATGTTTCCTAAAGAAGATATGTCTTATTTGCAAAATTGAAGATCCGTTGATATGCTTTTCAATCCATTAGGAGTCCTCTCACGAATGAATGTAGGACAGATATTTGAGTGCTGATCACTCGGGTTAGCGGAGAGTTTGCTAGATAGACATTATCGAGTAGTACCTTTTGGTGAGAGATATGTACAAAAGGCTTCTAGAAAACTAGTTTTTTTTTCTCAATTATATGAAGCTAGTAAGCATACAACGAGTTCATGGATATTTGATGGAAGAACGAAAACTCTGAACAACCTGTTATAA

mRNA sequence

ATGTTTCCTAAAGAAGATATATCCGTTGATATGCTTTTCAATCCATTAGGAGTCCTCTCACGAATGAATCTAGTAAGCATACAACGAGTTCATGGATATTTAAACCCAACGGAGAGTTTGCTAGATAGACATTATCGAGTAGTACCTTTTGGTGAGAGATATGTACAAAAGGCTTCTAGAAAACTAGTTTTTTTTTCTCAATTATATGAAGCTAGTAAGCATACAACGAGTTCATGGATATTTGATGGAAGAACGAAAACTCTGAACAACCTGTTATAA

Coding sequence (CDS)

ATGTTTCCTAAAGAAGATATATCCGTTGATATGCTTTTCAATCCATTAGGAGTCCTCTCACGAATGAATCTAGTAAGCATACAACGAGTTCATGGATATTTAAACCCAACGGAGAGTTTGCTAGATAGACATTATCGAGTAGTACCTTTTGGTGAGAGATATGTACAAAAGGCTTCTAGAAAACTAGTTTTTTTTTCTCAATTATATGAAGCTAGTAAGCATACAACGAGTTCATGGATATTTGATGGAAGAACGAAAACTCTGAACAACCTGTTATAA

Protein sequence

MFPKEDISVDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGERYVQKASRKLVFFSQLYEASKHTTSSWIFDGRTKTLNNLL

Homology

[Close]

BLAST of ClCG07G012030 vs. NCBI nr
Match: KAF3624581.1 (DNA-directed RNA polymerase subunit beta [Capsicum annuum])

HSP 1 Score: 90.5 bits (223), Expect = 8.1e-15
Identity = 55/103 (53.40%), Postives = 67/103 (65.05%), Query Frame = 0


Query: 1   MFPKEDI-------SVDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGER 60
           + P++D+       SVDM+FNPLGV SRMN+  I +    L    SLLDRHYR+VPF ER
Sbjct: 309 ILPRQDMPYLQDGRSVDMVFNPLGVPSRMNVRQIFKCS--LGLAGSLLDRHYRIVPFDER 368

Query: 61  YVQKASRKLVFFSQLYEASKHTTSSW-----------IFDGRT 86
           Y Q+ASRKLV FS+LYEASK T++ W           IFDGRT
Sbjct: 369 YEQEASRKLV-FSELYEASKQTSNPWGFEPEYPGKNRIFDGRT 408

[Close]

BLAST of ClCG07G012030 vs. NCBI nr
Match: AHM89856.1 (RNA polymerase beta subunit [Lagenaria siceraria])

HSP 1 Score: 89.7 bits (221), Expect = 1.4e-14
Identity = 51/89 (57.30%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 1   MFPKEDI-------SVDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGER 60
           + P+ED+        VDM+FNPLGV SRMN+  I      L    SLLDRHYR+VPF ER
Sbjct: 833 ILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECS--LGLAGSLLDRHYRIVPFDER 892

Query: 61  YVQKASRKLVFFSQLYEASKHTTSSWIFD 83
           Y Q+ASRKLV FS+LYEASK T S W+F+
Sbjct: 893 YEQEASRKLV-FSELYEASKQTASPWVFE 918

[Close]

BLAST of ClCG07G012030 vs. NCBI nr
Match: YP_009753166.1 (RNA polymerase subunit beta [Trichosanthes truncata] >QIT06238.1 RNA polymerase subunit beta [Trichosanthes truncata])

HSP 1 Score: 89.7 bits (221), Expect = 1.4e-14
Identity = 51/89 (57.30%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 1   MFPKEDI-------SVDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGER 60
           + P+ED+        VDM+FNPLGV SRMN+  I      L    SLLDRHYR+VPF ER
Sbjct: 833 ILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECS--LGLAGSLLDRHYRIVPFDER 892

Query: 61  YVQKASRKLVFFSQLYEASKHTTSSWIFD 83
           Y Q+ASRKLV FS+LYEASK T S W+F+
Sbjct: 893 YEQEASRKLV-FSELYEASKQTASPWVFE 918

[Close]

BLAST of ClCG07G012030 vs. NCBI nr
Match: YP_009752827.1 (RNA polymerase subunit beta [Baijiania yunnanensis] >QIT05899.1 RNA polymerase subunit beta [Baijiania yunnanensis])

HSP 1 Score: 89.7 bits (221), Expect = 1.4e-14
Identity = 51/89 (57.30%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 1   MFPKEDI-------SVDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGER 60
           + P+ED+        VDM+FNPLGV SRMN+  I      L    SLLDRHYR+VPF ER
Sbjct: 833 ILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECS--LGLAGSLLDRHYRIVPFDER 892

Query: 61  YVQKASRKLVFFSQLYEASKHTTSSWIFD 83
           Y Q+ASRKLV FS+LYEASK T S W+F+
Sbjct: 893 YEQEASRKLV-FSELYEASKQTASPWVFE 918

[Close]

BLAST of ClCG07G012030 vs. NCBI nr
Match: AHM88854.1 (RNA polymerase beta subunit, partial [Lagenaria siceraria])

HSP 1 Score: 89.7 bits (221), Expect = 1.4e-14
Identity = 51/89 (57.30%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 1   MFPKEDI-------SVDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGER 60
           + P+ED+        VDM+FNPLGV SRMN+  I      L    SLLDRHYR+VPF ER
Sbjct: 821 ILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECS--LGLAGSLLDRHYRIVPFDER 880

Query: 61  YVQKASRKLVFFSQLYEASKHTTSSWIFD 83
           Y Q+ASRKLV FS+LYEASK T S W+F+
Sbjct: 881 YEQEASRKLV-FSELYEASKQTASPWVFE 906

[Close]

BLAST of ClCG07G012030 vs. ExPASy Swiss-Prot
Match: Q4VZP1 (DNA-directed RNA polymerase subunit beta OS=Cucumis sativus OX=3659 GN=rpoB PE=3 SV=2)

HSP 1 Score: 89.7 bits (221), Expect = 1.8e-17
Identity = 51/89 (57.30%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 1   MFPKEDI-------SVDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGER 60
           + P+ED+        VDM+FNPLGV SRMN+  I      L    SLLDRHYR+VPF ER
Sbjct: 833 ILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECS--LGLAGSLLDRHYRIVPFDER 892

Query: 61  YVQKASRKLVFFSQLYEASKHTTSSWIFD 83
           Y Q+ASRKLV FS+LYEASK T S W+F+
Sbjct: 893 YEQEASRKLV-FSELYEASKQTASPWVFE 918

[Close]

BLAST of ClCG07G012030 vs. ExPASy Swiss-Prot
Match: Q8S8X9 (DNA-directed RNA polymerase subunit beta OS=Atropa belladonna OX=33113 GN=rpoB PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 6.9e-17
Identity = 49/89 (55.06%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 1   MFPKEDI-------SVDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGER 60
           + P++D+       SVDM+FNPLGV SRMN+  I      L    SLLDRHYR+ PF ER
Sbjct: 833 ILPRQDMPYLQDGRSVDMVFNPLGVPSRMNVGQIFECS--LGLAGSLLDRHYRIAPFDER 892

Query: 61  YVQKASRKLVFFSQLYEASKHTTSSWIFD 83
           Y Q+ASRKLV FS+LYEASK T + W+F+
Sbjct: 893 YEQEASRKLV-FSELYEASKQTANPWVFE 918

[Close]

BLAST of ClCG07G012030 vs. ExPASy Swiss-Prot
Match: Q3C1G7 (DNA-directed RNA polymerase subunit beta OS=Nicotiana sylvestris OX=4096 GN=rpoB PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 6.9e-17
Identity = 49/89 (55.06%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 1   MFPKEDI-------SVDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGER 60
           + P++D+       SVDM+FNPLGV SRMN+  I      L    SLLDRHYR+ PF ER
Sbjct: 833 ILPRQDMPYLQDGRSVDMVFNPLGVPSRMNVGQIFECS--LGLAGSLLDRHYRIAPFDER 892

Query: 61  YVQKASRKLVFFSQLYEASKHTTSSWIFD 83
           Y Q+ASRKLV FS+LYEASK T + W+F+
Sbjct: 893 YEQEASRKLV-FSELYEASKQTANPWVFE 918

[Close]

BLAST of ClCG07G012030 vs. ExPASy Swiss-Prot
Match: Q33C46 (DNA-directed RNA polymerase subunit beta OS=Nicotiana tomentosiformis OX=4098 GN=rpoB PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 6.9e-17
Identity = 49/89 (55.06%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 1   MFPKEDI-------SVDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGER 60
           + P++D+       SVDM+FNPLGV SRMN+  I      L    SLLDRHYR+ PF ER
Sbjct: 833 ILPRQDMPYLQDGRSVDMVFNPLGVPSRMNVGQIFECS--LGLAGSLLDRHYRIAPFDER 892

Query: 61  YVQKASRKLVFFSQLYEASKHTTSSWIFD 83
           Y Q+ASRKLV FS+LYEASK T + W+F+
Sbjct: 893 YEQEASRKLV-FSELYEASKQTANPWVFE 918

[Close]

BLAST of ClCG07G012030 vs. ExPASy Swiss-Prot
Match: Q2MIJ5 (DNA-directed RNA polymerase subunit beta OS=Solanum bulbocastanum OX=147425 GN=rpoB PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 6.9e-17
Identity = 49/89 (55.06%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 1   MFPKEDI-------SVDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGER 60
           + P++D+       SVDM+FNPLGV SRMN+  I      L    SLLDRHYR+ PF ER
Sbjct: 833 ILPRQDMPYLQDGRSVDMVFNPLGVPSRMNVGQIFECS--LGLAGSLLDRHYRIAPFDER 892

Query: 61  YVQKASRKLVFFSQLYEASKHTTSSWIFD 83
           Y Q+ASRKLV FS+LYEASK T + W+F+
Sbjct: 893 YEQEASRKLV-FSELYEASKQTANPWVFE 918

[Close]

BLAST of ClCG07G012030 vs. ExPASy TrEMBL
Match: A0A218KG28 (DNA-directed RNA polymerase subunit beta OS=Cucumis sativus var. hardwickii OX=319220 GN=rpoB PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 6.7e-15
Identity = 51/89 (57.30%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 1   MFPKEDI-------SVDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGER 60
           + P+ED+        VDM+FNPLGV SRMN+  I      L    SLLDRHYR+VPF ER
Sbjct: 833 ILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECS--LGLAGSLLDRHYRIVPFDER 892

Query: 61  YVQKASRKLVFFSQLYEASKHTTSSWIFD 83
           Y Q+ASRKLV FS+LYEASK T S W+F+
Sbjct: 893 YEQEASRKLV-FSELYEASKQTASPWVFE 918

[Close]

BLAST of ClCG07G012030 vs. ExPASy TrEMBL
Match: A0A6H0ETN6 (DNA-directed RNA polymerase subunit beta OS=Trichosanthes kirilowii OX=3677 GN=rpoB PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 6.7e-15
Identity = 51/89 (57.30%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 1   MFPKEDI-------SVDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGER 60
           + P+ED+        VDM+FNPLGV SRMN+  I      L    SLLDRHYR+VPF ER
Sbjct: 833 ILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECS--LGLAGSLLDRHYRIVPFDER 892

Query: 61  YVQKASRKLVFFSQLYEASKHTTSSWIFD 83
           Y Q+ASRKLV FS+LYEASK T S W+F+
Sbjct: 893 YEQEASRKLV-FSELYEASKQTASPWVFE 918

[Close]

BLAST of ClCG07G012030 vs. ExPASy TrEMBL
Match: A0A1X9Q1B9 (DNA-directed RNA polymerase subunit beta OS=Cucumis sativus OX=3659 GN=rpoB PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 6.7e-15
Identity = 51/89 (57.30%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 1   MFPKEDI-------SVDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGER 60
           + P+ED+        VDM+FNPLGV SRMN+  I      L    SLLDRHYR+VPF ER
Sbjct: 833 ILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECS--LGLAGSLLDRHYRIVPFDER 892

Query: 61  YVQKASRKLVFFSQLYEASKHTTSSWIFD 83
           Y Q+ASRKLV FS+LYEASK T S W+F+
Sbjct: 893 YEQEASRKLV-FSELYEASKQTASPWVFE 918

[Close]

BLAST of ClCG07G012030 vs. ExPASy TrEMBL
Match: A0A249RZI0 (DNA-directed RNA polymerase subunit beta OS=Cucumis melo var. cantalupensis OX=3658 GN=rpoB PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 6.7e-15
Identity = 51/89 (57.30%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 1   MFPKEDI-------SVDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGER 60
           + P+ED+        VDM+FNPLGV SRMN+  I      L    SLLDRHYR+VPF ER
Sbjct: 833 ILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECS--LGLAGSLLDRHYRIVPFDER 892

Query: 61  YVQKASRKLVFFSQLYEASKHTTSSWIFD 83
           Y Q+ASRKLV FS+LYEASK T S W+F+
Sbjct: 893 YEQEASRKLV-FSELYEASKQTASPWVFE 918

[Close]

BLAST of ClCG07G012030 vs. ExPASy TrEMBL
Match: A0A1S4ETZ9 (DNA-directed RNA polymerase subunit beta OS=Cucumis melo OX=3656 GN=rpoB PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 6.7e-15
Identity = 51/89 (57.30%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 1   MFPKEDI-------SVDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGER 60
           + P+ED+        VDM+FNPLGV SRMN+  I      L    SLLDRHYR+VPF ER
Sbjct: 833 ILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECS--LGLAGSLLDRHYRIVPFDER 892

Query: 61  YVQKASRKLVFFSQLYEASKHTTSSWIFD 83
           Y Q+ASRKLV FS+LYEASK T S W+F+
Sbjct: 893 YEQEASRKLV-FSELYEASKQTASPWVFE 918

[Close]

BLAST of ClCG07G012030 vs. TAIR 10
Match: ATCG00190.1 (RNA polymerase subunit beta )

HSP 1 Score: 85.5 bits (210), Expect = 2.4e-17
Identity = 46/74 (62.16%), Postives = 54/74 (72.97%), Query Frame = 0


Query: 9   VDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGERYVQKASRKLVFFSQL 68
           VDM+FNPLGV SRMN+  I      L    SLLDRHYR+ PF ERY Q+ASRKLV FS+L
Sbjct: 850 VDMVFNPLGVPSRMNVGQIFECS--LGLAGSLLDRHYRIAPFDERYEQEASRKLV-FSEL 909

Query: 69  YEASKHTTSSWIFD 83
           YEASK T + W+F+
Sbjct: 910 YEASKQTANPWVFE 920

The following BLAST results are available for this feature:

BLAST of ClCG07G012030 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF3624581.1	8.1e-15	53.40	DNA-directed RNA polymerase subunit beta [Capsicum annuum]	[more]
AHM89856.1	1.4e-14	57.30	RNA polymerase beta subunit [Lagenaria siceraria]	[more]
YP_009753166.1	1.4e-14	57.30	RNA polymerase subunit beta [Trichosanthes truncata] >QIT06238.1 RNA polymerase ...	[more]
YP_009752827.1	1.4e-14	57.30	RNA polymerase subunit beta [Baijiania yunnanensis] >QIT05899.1 RNA polymerase s...	[more]
AHM88854.1	1.4e-14	57.30	RNA polymerase beta subunit, partial [Lagenaria siceraria]	[more]

BLAST of ClCG07G012030 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZP1	1.8e-17	57.30	DNA-directed RNA polymerase subunit beta OS=Cucumis sativus OX=3659 GN=rpoB PE=3...	[more]
Q8S8X9	6.9e-17	55.06	DNA-directed RNA polymerase subunit beta OS=Atropa belladonna OX=33113 GN=rpoB P...	[more]
Q3C1G7	6.9e-17	55.06	DNA-directed RNA polymerase subunit beta OS=Nicotiana sylvestris OX=4096 GN=rpoB...	[more]
Q33C46	6.9e-17	55.06	DNA-directed RNA polymerase subunit beta OS=Nicotiana tomentosiformis OX=4098 GN...	[more]
Q2MIJ5	6.9e-17	55.06	DNA-directed RNA polymerase subunit beta OS=Solanum bulbocastanum OX=147425 GN=r...	[more]

BLAST of ClCG07G012030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A218KG28	6.7e-15	57.30	DNA-directed RNA polymerase subunit beta OS=Cucumis sativus var. hardwickii OX=3...	[more]
A0A6H0ETN6	6.7e-15	57.30	DNA-directed RNA polymerase subunit beta OS=Trichosanthes kirilowii OX=3677 GN=r...	[more]
A0A1X9Q1B9	6.7e-15	57.30	DNA-directed RNA polymerase subunit beta OS=Cucumis sativus OX=3659 GN=rpoB PE=3...	[more]
A0A249RZI0	6.7e-15	57.30	DNA-directed RNA polymerase subunit beta OS=Cucumis melo var. cantalupensis OX=3...	[more]
A0A1S4ETZ9	6.7e-15	57.30	DNA-directed RNA polymerase subunit beta OS=Cucumis melo OX=3656 GN=rpoB PE=3 SV...	[more]

BLAST of ClCG07G012030 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00190.1	2.4e-17	62.16	RNA polymerase subunit beta	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR037033	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily	GENE3D	2.40.270.10		coord: 1..90 e-value: 1.3E-9 score: 39.8
None	No IPR available	PANTHER	PTHR20856:SF30	DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA	coord: 6..85
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 4..84
IPR015712	DNA-directed RNA polymerase, subunit 2	PANTHER	PTHR20856	DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2	coord: 6..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG07G012030.1	ClCG07G012030.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0032549	ribonucleoside binding