Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTTAAAAAACTCTCTCCTTCTCATTCTTCCTCTCATATTTTGCCTTTTTATCTCTCTCCCCACATCAGGTAAAACACCCCTTTACCTCATAATCATTATTAATCCAAACTTATAGGCATATATATGTGTGTGTATATATATATTTATATGAAATATCAATCCAATTTGTTTTGGAATATCAGGGCATGAGGATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTTCTTCTTCTTCTTCTTCAAAGCAGAAGGAATTGGTAATTGGATCAAGGCCACCACAGTGCTTCAACAAGTGCTTAAATTGCAAGCCATGTGTTGCTGCTTTGGTTATTTCTCAGCGCCATAAAGATGATGACAATAATATTATTGTTTCTAATTTGGAGGCAGATCTTATTCCAGTTCCTAAAGATGATGCTTATTATCTTCTCTCATGGAAATGTAAGTGTAAAGATAAGTACTTTCAACCTTGAATTAAACACGAACTTTCACTTTCCCCTGTATCATATAAGAAGATATTAATTATTATTATTCCTCAAACCTTATCTTTTCCTAACACAGTTTTTATTAGTCCTGTGGAATCTACAAGCTATTTAATGCGAATATAAGTTAGTTGTTTTCGTTGAATCAGATGGATTTGATCATTGGACCACTTTACTTTTAATTGTTTGTGGTAATCATTATACAATTTGAGGTAATCATAAAATAGATTTATTGGGAAATCGAAATAGTTTTATTTTCATAATTTTTTAAGTTGATGGGTTGGTTTGTATTAGTTAGGGGTGTGGTTTTGAGTAATTGAATGGTCGTAGTCATACTGCTGTACTTGGGCCGACCAATTTTAGAGATGCAGCAAAGGAAATCTTTTTAATTTAAAGCTCAGTTCTTTACAGCAAAAAATTGGGGTGTGTGTTAAGATGAAAACAGTCATTGTTGTATATTTCAACTTAGACATGATGATGAGCAGCAGCGAGAAAACGTTAATGTTTCTGCTGGACCATGTTCAGATCTTATGTTTGTGTATACAGATATATTTATATAGATAGATAGATATATGTACCTTTTCCTCAACAGCTACGAGCCAAATTGAATACAAAACTTGAAACCTCCCTTTCAGAGTTATTATGACATGTTCCAAGAGAAATTCAAGAAAAATATTTTGAATTTTAAAATAATAATAATAATAAGGTAAGCACCTCGACTTCTTAATTTTCCACCGTCATCCTATCAATGTTGACCAACCTCTAAGTTCAATGCGAGTAGTTTAGAGCCCATTTCATCCCTTTACTTTTTTAAGAATGGTTTTCATTGAATTCTTAGACAAATTTGAAAAACAAAAACTCACCTTTTTTTTTTTTTCGTTTGCAAGAAAAAGAAAACAAGGACACTTGTTAAATGAGAGTATTGTTTATAATAAAATTATTTTAAATGACAAAAATGCTGAAAATATTTACAAATAATAGCAAAATATCACAATCTATCTGCAATAGACCGTGATAAACTACTATATGTGTCTATCATGACATATATAATAATCTATTGCGATCTATTATAGATAGACAATAAAATTTTACTATATTTATAAATATTTTGATTCATTTTCCTATATTTAAAAACAACCCTCGTTGAAATTAAATGATTACCAAACGAAACATTAATATTTACTTATTTGAAGTTTCAAATTTTGACTAGTACGTAAGGCTTGAAGAAGGGAGAAGGAAAGCCTCTGATTCTGACATGCCCCCCATCATTCATGTACAATGATAATGATCACTGAAATGTTTAAGAGTGGTACTCCAAAATTCTTAATCTAAAATCACAAGAAAAAGATTATCCTTAAAAAATAGATAGTTTATAAAGGACTATGGTGAGTTATTAACAAATCTACATTTAACGGCTCTCAGCAAGAAGATTCTAAATTTATTTTCAATGACATTTCTGTACAATCCATGGCAAATTTCCTACACCCCCTCATTTCTTTTCTTTTTCCTCTTTTGTAATGAAACCTTTAAATACAGGACTGATGAGAATTCCAAGGGGTTTATGAAGAAAATTAAACACACACACATATACATACACACTTCCTGTGTTATATCATTTGCAGCTTAGCCCTTTTTGTTCTCTAAATCATAGACAGCATATACTGAAGTTCAGATCATAGACAAAGTGAAGCTTCATGATCGTCTGCTGCATCATTGA
mRNA sequence
ATGGCTTTAAAAAACTCTCTCCTTCTCATTCTTCCTCTCATATTTTGCCTTTTTATCTCTCTCCCCACATCAGGGCATGAGGATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTTCTTCTTCTTCTTCTTCAAAGCAGAAGGAATTGGTAATTGGATCAAGGCCACCACAGTGCTTCAACAAGTGCTTAAATTGCAAGCCATGTGTTGCTGCTTTGGTTATTTCTCAGCGCCATAAAGATGATGACAATAATATTATTGTTTCTAATTTGGAGGCAGATCTTATTCCAGTTCCTAAAGATGATGCTTATTATCTTCTCTCATGGAAATCATATACTGAAGTTCAGATCATAGACAAAGTGAAGCTTCATGATCGTCTGCTGCATCATTGA
Coding sequence (CDS)
ATGGCTTTAAAAAACTCTCTCCTTCTCATTCTTCCTCTCATATTTTGCCTTTTTATCTCTCTCCCCACATCAGGGCATGAGGATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTTCTTCTTCTTCTTCTTCAAAGCAGAAGGAATTGGTAATTGGATCAAGGCCACCACAGTGCTTCAACAAGTGCTTAAATTGCAAGCCATGTGTTGCTGCTTTGGTTATTTCTCAGCGCCATAAAGATGATGACAATAATATTATTGTTTCTAATTTGGAGGCAGATCTTATTCCAGTTCCTAAAGATGATGCTTATTATCTTCTCTCATGGAAATCATATACTGAAGTTCAGATCATAGACAAAGTGAAGCTTCATGATCGTCTGCTGCATCATTGA
Protein sequence
MALKNSLLLILPLIFCLFISLPTSGHEDSSSSSSSSSSSSSFSSSSSSKQKELVIGSRPPQCFNKCLNCKPCVAALVISQRHKDDDNNIIVSNLEADLIPVPKDDAYYLLSWKSYTEVQIIDKVKLHDRLLHH
Homology
BLAST of ClCG06G011240 vs. NCBI nr
Match:
XP_038879118.1 (EPIDERMAL PATTERNING FACTOR-like protein 8 [Benincasa hispida])
HSP 1 Score: 183.0 bits (463), Expect = 1.7e-42
Identity = 104/114 (91.23%), Postives = 107/114 (93.86%), Query Frame = 0
Query: 1 MALKNSLLLILPLIFCLFISLPTSGHEDSS-SSSSSSSSSSSFSSSSSSKQKELVIGSRP 60
MALKNSLLLILPLIFCLF S PTSGHEDSS SSSSSSSSSSS SSSSSSKQKELVIGSRP
Sbjct: 1 MALKNSLLLILPLIFCLFFSHPTSGHEDSSPSSSSSSSSSSSSSSSSSSKQKELVIGSRP 60
Query: 61 PQCFNKCLNCKPCVAALVISQRHKDDDNNIIVSNLEADLIPVPKDDAYYLLSWK 114
PQCFNKCLNCKPCVAALVISQ HK+DD I+VSNLEADL+PVPKDDAYYLLSWK
Sbjct: 61 PQCFNKCLNCKPCVAALVISQNHKNDD--IVVSNLEADLLPVPKDDAYYLLSWK 112
BLAST of ClCG06G011240 vs. NCBI nr
Match:
XP_031736064.1 (EPIDERMAL PATTERNING FACTOR-like protein 8 [Cucumis sativus])
HSP 1 Score: 164.9 bits (416), Expect = 4.9e-37
Identity = 91/116 (78.45%), Postives = 103/116 (88.79%), Query Frame = 0
Query: 1 MALKNSLLLILPLIFCLFISLPTSGHEDSSSSSSSSSSSSSFSSSSSSKQKELVIGSRPP 60
MALK+SLLLILPL+FCLF+S PTSGH+ + SSSSSSS SSSSSSKQKELVIGSRPP
Sbjct: 1 MALKHSLLLILPLLFCLFLSPPTSGHQQNFSSSSSSS-----SSSSSSKQKELVIGSRPP 60
Query: 61 QCFNKCLNCKPCVAALVISQRH---KDDDNNIIVSNLEADLIPVPKDDAYYLLSWK 114
QCFNKCLNCKPCVAALVISQRH +DD++++VSNLEADL+PVPK +AYYLLSWK
Sbjct: 61 QCFNKCLNCKPCVAALVISQRHTNNSNDDDHLVVSNLEADLLPVPKHNAYYLLSWK 111
BLAST of ClCG06G011240 vs. NCBI nr
Match:
KAE8653105.1 (hypothetical protein Csa_020083, partial [Cucumis sativus])
HSP 1 Score: 164.9 bits (416), Expect = 4.9e-37
Identity = 91/116 (78.45%), Postives = 103/116 (88.79%), Query Frame = 0
Query: 1 MALKNSLLLILPLIFCLFISLPTSGHEDSSSSSSSSSSSSSFSSSSSSKQKELVIGSRPP 60
MALK+SLLLILPL+FCLF+S PTSGH+ + SSSSSSS SSSSSSKQKELVIGSRPP
Sbjct: 37 MALKHSLLLILPLLFCLFLSPPTSGHQQNFSSSSSSS-----SSSSSSKQKELVIGSRPP 96
Query: 61 QCFNKCLNCKPCVAALVISQRH---KDDDNNIIVSNLEADLIPVPKDDAYYLLSWK 114
QCFNKCLNCKPCVAALVISQRH +DD++++VSNLEADL+PVPK +AYYLLSWK
Sbjct: 97 QCFNKCLNCKPCVAALVISQRHTNNSNDDDHLVVSNLEADLLPVPKHNAYYLLSWK 147
BLAST of ClCG06G011240 vs. NCBI nr
Match:
XP_008443990.1 (PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 1 [Cucumis melo])
HSP 1 Score: 160.2 bits (404), Expect = 1.2e-35
Identity = 87/115 (75.65%), Postives = 99/115 (86.09%), Query Frame = 0
Query: 1 MALKNSLLLILPLIFCLFISLPTSGHEDSSSSSSSSSSSSSFSSSSSSKQKELVIGSRPP 60
MALK+SLLLILPL+F LF+S PTSGHE + SS SSSSSSKQKELVIGSRPP
Sbjct: 1 MALKHSLLLILPLLFSLFLSHPTSGHEQNFSS----------SSSSSSKQKELVIGSRPP 60
Query: 61 QCFNKCLNCKPCVAALVISQRHKDDDNNIIVSNLEADLIPVPKDDAYYLLSWKSY 116
QCFNKCLNCKPCVAALVISQRH +++NN++VSNLEADL+PVP+DDAYYLLSWK +
Sbjct: 61 QCFNKCLNCKPCVAALVISQRH-NNNNNLVVSNLEADLLPVPEDDAYYLLSWKYF 104
BLAST of ClCG06G011240 vs. NCBI nr
Match:
XP_022933441.1 (EPIDERMAL PATTERNING FACTOR-like protein 8 isoform X2 [Cucurbita moschata] >KAG7021781.1 EPIDERMAL PATTERNING FACTOR-like protein 8, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 132.5 bits (332), Expect = 2.7e-27
Identity = 76/115 (66.09%), Postives = 81/115 (70.43%), Query Frame = 0
Query: 1 MALKNSLLLILPLIFCLFISLPTSGHEDSSSSSSSSSSSSSFSSSSSSKQKELVIGSRPP 60
MAL NSL LILPLIF L + PTSG+ED SKQKEL IGSRPP
Sbjct: 1 MALNNSLFLILPLIFSLSVFHPTSGNED-------------------SKQKELAIGSRPP 60
Query: 61 QCFNKCLNCKPCVAALVISQRHKDDDNNI--IVSNLEADLIPVPKDDAYYLLSWK 114
+CFNKCLNCKPCVAALVISQRHK DD+N +VSNLEA VPKDDAYYLLSWK
Sbjct: 61 KCFNKCLNCKPCVAALVISQRHKGDDSNNGGVVSNLEA--AQVPKDDAYYLLSWK 94
BLAST of ClCG06G011240 vs. ExPASy Swiss-Prot
Match:
Q1G3V9 (EPIDERMAL PATTERNING FACTOR-like protein 8 OS=Arabidopsis thaliana OX=3702 GN=EPFL8 PE=1 SV=1)
HSP 1 Score: 46.2 bits (108), Expect = 3.3e-04
Identity = 21/41 (51.22%), Postives = 26/41 (63.41%), Query Frame = 0
Query: 49 KQKELVIGSRPPQCFNKCLNCKPCVAALV-ISQRHKDDDNN 89
+ KE V+GS PP C KC NCKPC+ L I H DDD++
Sbjct: 40 RMKESVMGSEPPVCATKCRNCKPCLPYLFDIRGAHDDDDDS 80
BLAST of ClCG06G011240 vs. ExPASy TrEMBL
Match:
A0A1S3B8V6 (Epidermal patterning factor-like protein OS=Cucumis melo OX=3656 GN=LOC103487443 PE=3 SV=1)
HSP 1 Score: 160.2 bits (404), Expect = 5.8e-36
Identity = 87/115 (75.65%), Postives = 99/115 (86.09%), Query Frame = 0
Query: 1 MALKNSLLLILPLIFCLFISLPTSGHEDSSSSSSSSSSSSSFSSSSSSKQKELVIGSRPP 60
MALK+SLLLILPL+F LF+S PTSGHE + SS SSSSSSKQKELVIGSRPP
Sbjct: 1 MALKHSLLLILPLLFSLFLSHPTSGHEQNFSS----------SSSSSSKQKELVIGSRPP 60
Query: 61 QCFNKCLNCKPCVAALVISQRHKDDDNNIIVSNLEADLIPVPKDDAYYLLSWKSY 116
QCFNKCLNCKPCVAALVISQRH +++NN++VSNLEADL+PVP+DDAYYLLSWK +
Sbjct: 61 QCFNKCLNCKPCVAALVISQRH-NNNNNLVVSNLEADLLPVPEDDAYYLLSWKYF 104
BLAST of ClCG06G011240 vs. ExPASy TrEMBL
Match:
A0A6J1JFP8 (Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC111485317 PE=3 SV=1)
HSP 1 Score: 132.5 bits (332), Expect = 1.3e-27
Identity = 76/113 (67.26%), Postives = 83/113 (73.45%), Query Frame = 0
Query: 1 MALKNSLLLILPLIFCLFISLPTSGHEDSSSSSSSSSSSSSFSSSSSSKQKELVIGSRPP 60
MALK+SLLLILPLIF L +S PTSG+ED SS+QKELVIGSRPP
Sbjct: 1 MALKSSLLLILPLIFSLSLSHPTSGNED------------------SSRQKELVIGSRPP 60
Query: 61 QCFNKCLNCKPCVAALVISQRHKDDDNNIIVSNLEADLIPVPKDDAYYLLSWK 114
+CFNKCLNC+PCVAALVISQRHK NN SNLEA L P P+DDAYYLLSWK
Sbjct: 61 RCFNKCLNCRPCVAALVISQRHKGVHNNAF-SNLEAAL-PAPRDDAYYLLSWK 93
BLAST of ClCG06G011240 vs. ExPASy TrEMBL
Match:
A0A6J1EZ19 (Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111440854 PE=3 SV=1)
HSP 1 Score: 132.5 bits (332), Expect = 1.3e-27
Identity = 76/115 (66.09%), Postives = 81/115 (70.43%), Query Frame = 0
Query: 1 MALKNSLLLILPLIFCLFISLPTSGHEDSSSSSSSSSSSSSFSSSSSSKQKELVIGSRPP 60
MAL NSL LILPLIF L + PTSG+ED SKQKEL IGSRPP
Sbjct: 1 MALNNSLFLILPLIFSLSVFHPTSGNED-------------------SKQKELAIGSRPP 60
Query: 61 QCFNKCLNCKPCVAALVISQRHKDDDNNI--IVSNLEADLIPVPKDDAYYLLSWK 114
+CFNKCLNCKPCVAALVISQRHK DD+N +VSNLEA VPKDDAYYLLSWK
Sbjct: 61 KCFNKCLNCKPCVAALVISQRHKGDDSNNGGVVSNLEA--AQVPKDDAYYLLSWK 94
BLAST of ClCG06G011240 vs. ExPASy TrEMBL
Match:
A0A6J1HB97 (Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111461746 PE=3 SV=1)
HSP 1 Score: 131.7 bits (330), Expect = 2.2e-27
Identity = 76/113 (67.26%), Postives = 83/113 (73.45%), Query Frame = 0
Query: 1 MALKNSLLLILPLIFCLFISLPTSGHEDSSSSSSSSSSSSSFSSSSSSKQKELVIGSRPP 60
MALK+SLLLILPLIF L +S PTSG+ED SSKQKELVIGSRPP
Sbjct: 1 MALKSSLLLILPLIFSLSLSHPTSGNED------------------SSKQKELVIGSRPP 60
Query: 61 QCFNKCLNCKPCVAALVISQRHKDDDNNIIVSNLEADLIPVPKDDAYYLLSWK 114
+CFNKCLNC+PCVAALVISQRHK NN S+LEA L P P+DDAYYLLSWK
Sbjct: 61 RCFNKCLNCRPCVAALVISQRHKGVHNNAF-SSLEAAL-PAPRDDAYYLLSWK 93
BLAST of ClCG06G011240 vs. ExPASy TrEMBL
Match:
A0A6J1I4N2 (Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC111470622 PE=3 SV=1)
HSP 1 Score: 128.6 bits (322), Expect = 1.9e-26
Identity = 75/115 (65.22%), Postives = 80/115 (69.57%), Query Frame = 0
Query: 1 MALKNSLLLILPLIFCLFISLPTSGHEDSSSSSSSSSSSSSFSSSSSSKQKELVIGSRPP 60
MAL NSL LILPLIF L + LPTSG+ED SKQKEL IGSRPP
Sbjct: 67 MALNNSLFLILPLIFSLSVFLPTSGNED-------------------SKQKELAIGSRPP 126
Query: 61 QCFNKCLNCKPCVAALVISQRHKDDDNNI--IVSNLEADLIPVPKDDAYYLLSWK 114
+CFNKCLNCKPCVAALVISQR K DNN +VSN+EA VPKDDAYYLLSWK
Sbjct: 127 KCFNKCLNCKPCVAALVISQRLKGYDNNNGGVVSNMEA--AQVPKDDAYYLLSWK 160
BLAST of ClCG06G011240 vs. TAIR 10
Match:
AT1G80133.1 (unknown protein; LOCATED IN: endomembrane system; Has 154 Blast hits to 154 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 154; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 46.2 bits (108), Expect = 2.4e-05
Identity = 21/41 (51.22%), Postives = 26/41 (63.41%), Query Frame = 0
Query: 49 KQKELVIGSRPPQCFNKCLNCKPCVAALV-ISQRHKDDDNN 89
+ KE V+GS PP C KC NCKPC+ L I H DDD++
Sbjct: 40 RMKESVMGSEPPVCATKCRNCKPCLPYLFDIRGAHDDDDDS 80
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_038879118.1 | 1.7e-42 | 91.23 | EPIDERMAL PATTERNING FACTOR-like protein 8 [Benincasa hispida] | [more] |
| XP_031736064.1 | 4.9e-37 | 78.45 | EPIDERMAL PATTERNING FACTOR-like protein 8 [Cucumis sativus] | [more] |
| KAE8653105.1 | 4.9e-37 | 78.45 | hypothetical protein Csa_020083, partial [Cucumis sativus] | [more] |
| XP_008443990.1 | 1.2e-35 | 75.65 | PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 1 [Cucumis melo] | [more] |
| XP_022933441.1 | 2.7e-27 | 66.09 | EPIDERMAL PATTERNING FACTOR-like protein 8 isoform X2 [Cucurbita moschata] >KAG7... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Q1G3V9 | 3.3e-04 | 51.22 | EPIDERMAL PATTERNING FACTOR-like protein 8 OS=Arabidopsis thaliana OX=3702 GN=EP... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A1S3B8V6 | 5.8e-36 | 75.65 | Epidermal patterning factor-like protein OS=Cucumis melo OX=3656 GN=LOC103487443... | [more] |
| A0A6J1JFP8 | 1.3e-27 | 67.26 | Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC11148... | [more] |
| A0A6J1EZ19 | 1.3e-27 | 66.09 | Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111... | [more] |
| A0A6J1HB97 | 2.2e-27 | 67.26 | Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111... | [more] |
| A0A6J1I4N2 | 1.9e-26 | 65.22 | Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC11147... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT1G80133.1 | 2.4e-05 | 51.22 | unknown protein; LOCATED IN: endomembrane system; Has 154 Blast hits to 154 prot... | [more] |
