ClCG06G011240 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG06G011240
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionEpidermal patterning factor-like protein
LocationCG_Chr06: 24013349 .. 24015560 (+)
RNA-Seq ExpressionClCG06G011240
SyntenyClCG06G011240
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTTAAAAAACTCTCTCCTTCTCATTCTTCCTCTCATATTTTGCCTTTTTATCTCTCTCCCCACATCAGGTAAAACACCCCTTTACCTCATAATCATTATTAATCCAAACTTATAGGCATATATATGTGTGTGTATATATATATTTATATGAAATATCAATCCAATTTGTTTTGGAATATCAGGGCATGAGGATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTTCTTCTTCTTCTTCTTCAAAGCAGAAGGAATTGGTAATTGGATCAAGGCCACCACAGTGCTTCAACAAGTGCTTAAATTGCAAGCCATGTGTTGCTGCTTTGGTTATTTCTCAGCGCCATAAAGATGATGACAATAATATTATTGTTTCTAATTTGGAGGCAGATCTTATTCCAGTTCCTAAAGATGATGCTTATTATCTTCTCTCATGGAAATGTAAGTGTAAAGATAAGTACTTTCAACCTTGAATTAAACACGAACTTTCACTTTCCCCTGTATCATATAAGAAGATATTAATTATTATTATTCCTCAAACCTTATCTTTTCCTAACACAGTTTTTATTAGTCCTGTGGAATCTACAAGCTATTTAATGCGAATATAAGTTAGTTGTTTTCGTTGAATCAGATGGATTTGATCATTGGACCACTTTACTTTTAATTGTTTGTGGTAATCATTATACAATTTGAGGTAATCATAAAATAGATTTATTGGGAAATCGAAATAGTTTTATTTTCATAATTTTTTAAGTTGATGGGTTGGTTTGTATTAGTTAGGGGTGTGGTTTTGAGTAATTGAATGGTCGTAGTCATACTGCTGTACTTGGGCCGACCAATTTTAGAGATGCAGCAAAGGAAATCTTTTTAATTTAAAGCTCAGTTCTTTACAGCAAAAAATTGGGGTGTGTGTTAAGATGAAAACAGTCATTGTTGTATATTTCAACTTAGACATGATGATGAGCAGCAGCGAGAAAACGTTAATGTTTCTGCTGGACCATGTTCAGATCTTATGTTTGTGTATACAGATATATTTATATAGATAGATAGATATATGTACCTTTTCCTCAACAGCTACGAGCCAAATTGAATACAAAACTTGAAACCTCCCTTTCAGAGTTATTATGACATGTTCCAAGAGAAATTCAAGAAAAATATTTTGAATTTTAAAATAATAATAATAATAAGGTAAGCACCTCGACTTCTTAATTTTCCACCGTCATCCTATCAATGTTGACCAACCTCTAAGTTCAATGCGAGTAGTTTAGAGCCCATTTCATCCCTTTACTTTTTTAAGAATGGTTTTCATTGAATTCTTAGACAAATTTGAAAAACAAAAACTCACCTTTTTTTTTTTTTCGTTTGCAAGAAAAAGAAAACAAGGACACTTGTTAAATGAGAGTATTGTTTATAATAAAATTATTTTAAATGACAAAAATGCTGAAAATATTTACAAATAATAGCAAAATATCACAATCTATCTGCAATAGACCGTGATAAACTACTATATGTGTCTATCATGACATATATAATAATCTATTGCGATCTATTATAGATAGACAATAAAATTTTACTATATTTATAAATATTTTGATTCATTTTCCTATATTTAAAAACAACCCTCGTTGAAATTAAATGATTACCAAACGAAACATTAATATTTACTTATTTGAAGTTTCAAATTTTGACTAGTACGTAAGGCTTGAAGAAGGGAGAAGGAAAGCCTCTGATTCTGACATGCCCCCCATCATTCATGTACAATGATAATGATCACTGAAATGTTTAAGAGTGGTACTCCAAAATTCTTAATCTAAAATCACAAGAAAAAGATTATCCTTAAAAAATAGATAGTTTATAAAGGACTATGGTGAGTTATTAACAAATCTACATTTAACGGCTCTCAGCAAGAAGATTCTAAATTTATTTTCAATGACATTTCTGTACAATCCATGGCAAATTTCCTACACCCCCTCATTTCTTTTCTTTTTCCTCTTTTGTAATGAAACCTTTAAATACAGGACTGATGAGAATTCCAAGGGGTTTATGAAGAAAATTAAACACACACACATATACATACACACTTCCTGTGTTATATCATTTGCAGCTTAGCCCTTTTTGTTCTCTAAATCATAGACAGCATATACTGAAGTTCAGATCATAGACAAAGTGAAGCTTCATGATCGTCTGCTGCATCATTGA

mRNA sequence

ATGGCTTTAAAAAACTCTCTCCTTCTCATTCTTCCTCTCATATTTTGCCTTTTTATCTCTCTCCCCACATCAGGGCATGAGGATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTTCTTCTTCTTCTTCTTCAAAGCAGAAGGAATTGGTAATTGGATCAAGGCCACCACAGTGCTTCAACAAGTGCTTAAATTGCAAGCCATGTGTTGCTGCTTTGGTTATTTCTCAGCGCCATAAAGATGATGACAATAATATTATTGTTTCTAATTTGGAGGCAGATCTTATTCCAGTTCCTAAAGATGATGCTTATTATCTTCTCTCATGGAAATCATATACTGAAGTTCAGATCATAGACAAAGTGAAGCTTCATGATCGTCTGCTGCATCATTGA

Coding sequence (CDS)

ATGGCTTTAAAAAACTCTCTCCTTCTCATTCTTCCTCTCATATTTTGCCTTTTTATCTCTCTCCCCACATCAGGGCATGAGGATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTTCTTCTTCTTCTTCTTCAAAGCAGAAGGAATTGGTAATTGGATCAAGGCCACCACAGTGCTTCAACAAGTGCTTAAATTGCAAGCCATGTGTTGCTGCTTTGGTTATTTCTCAGCGCCATAAAGATGATGACAATAATATTATTGTTTCTAATTTGGAGGCAGATCTTATTCCAGTTCCTAAAGATGATGCTTATTATCTTCTCTCATGGAAATCATATACTGAAGTTCAGATCATAGACAAAGTGAAGCTTCATGATCGTCTGCTGCATCATTGA

Protein sequence

MALKNSLLLILPLIFCLFISLPTSGHEDSSSSSSSSSSSSSFSSSSSSKQKELVIGSRPPQCFNKCLNCKPCVAALVISQRHKDDDNNIIVSNLEADLIPVPKDDAYYLLSWKSYTEVQIIDKVKLHDRLLHH
Homology
[Close]
BLAST of ClCG06G011240 vs. NCBI nr
Match: XP_038879118.1 (EPIDERMAL PATTERNING FACTOR-like protein 8 [Benincasa hispida])

HSP 1 Score: 183.0 bits (463), Expect = 1.7e-42
Identity = 104/114 (91.23%), Postives = 107/114 (93.86%), Query Frame = 0 

Query: 1   MALKNSLLLILPLIFCLFISLPTSGHEDSS-SSSSSSSSSSSFSSSSSSKQKELVIGSRP 60
           MALKNSLLLILPLIFCLF S PTSGHEDSS SSSSSSSSSSS SSSSSSKQKELVIGSRP
Sbjct: 1   MALKNSLLLILPLIFCLFFSHPTSGHEDSSPSSSSSSSSSSSSSSSSSSKQKELVIGSRP 60

Query: 61  PQCFNKCLNCKPCVAALVISQRHKDDDNNIIVSNLEADLIPVPKDDAYYLLSWK 114
           PQCFNKCLNCKPCVAALVISQ HK+DD  I+VSNLEADL+PVPKDDAYYLLSWK
Sbjct: 61  PQCFNKCLNCKPCVAALVISQNHKNDD--IVVSNLEADLLPVPKDDAYYLLSWK 112

[Close]
BLAST of ClCG06G011240 vs. NCBI nr
Match: XP_031736064.1 (EPIDERMAL PATTERNING FACTOR-like protein 8 [Cucumis sativus])

HSP 1 Score: 164.9 bits (416), Expect = 4.9e-37
Identity = 91/116 (78.45%), Postives = 103/116 (88.79%), Query Frame = 0 

Query: 1   MALKNSLLLILPLIFCLFISLPTSGHEDSSSSSSSSSSSSSFSSSSSSKQKELVIGSRPP 60
           MALK+SLLLILPL+FCLF+S PTSGH+ + SSSSSSS     SSSSSSKQKELVIGSRPP
Sbjct: 1   MALKHSLLLILPLLFCLFLSPPTSGHQQNFSSSSSSS-----SSSSSSKQKELVIGSRPP 60

Query: 61  QCFNKCLNCKPCVAALVISQRH---KDDDNNIIVSNLEADLIPVPKDDAYYLLSWK 114
           QCFNKCLNCKPCVAALVISQRH    +DD++++VSNLEADL+PVPK +AYYLLSWK
Sbjct: 61  QCFNKCLNCKPCVAALVISQRHTNNSNDDDHLVVSNLEADLLPVPKHNAYYLLSWK 111

[Close]
BLAST of ClCG06G011240 vs. NCBI nr
Match: KAE8653105.1 (hypothetical protein Csa_020083, partial [Cucumis sativus])

HSP 1 Score: 164.9 bits (416), Expect = 4.9e-37
Identity = 91/116 (78.45%), Postives = 103/116 (88.79%), Query Frame = 0 

Query: 1   MALKNSLLLILPLIFCLFISLPTSGHEDSSSSSSSSSSSSSFSSSSSSKQKELVIGSRPP 60
           MALK+SLLLILPL+FCLF+S PTSGH+ + SSSSSSS     SSSSSSKQKELVIGSRPP
Sbjct: 37  MALKHSLLLILPLLFCLFLSPPTSGHQQNFSSSSSSS-----SSSSSSKQKELVIGSRPP 96

Query: 61  QCFNKCLNCKPCVAALVISQRH---KDDDNNIIVSNLEADLIPVPKDDAYYLLSWK 114
           QCFNKCLNCKPCVAALVISQRH    +DD++++VSNLEADL+PVPK +AYYLLSWK
Sbjct: 97  QCFNKCLNCKPCVAALVISQRHTNNSNDDDHLVVSNLEADLLPVPKHNAYYLLSWK 147

[Close]
BLAST of ClCG06G011240 vs. NCBI nr
Match: XP_008443990.1 (PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 1 [Cucumis melo])

HSP 1 Score: 160.2 bits (404), Expect = 1.2e-35
Identity = 87/115 (75.65%), Postives = 99/115 (86.09%), Query Frame = 0 

Query: 1   MALKNSLLLILPLIFCLFISLPTSGHEDSSSSSSSSSSSSSFSSSSSSKQKELVIGSRPP 60
           MALK+SLLLILPL+F LF+S PTSGHE + SS          SSSSSSKQKELVIGSRPP
Sbjct: 1   MALKHSLLLILPLLFSLFLSHPTSGHEQNFSS----------SSSSSSKQKELVIGSRPP 60

Query: 61  QCFNKCLNCKPCVAALVISQRHKDDDNNIIVSNLEADLIPVPKDDAYYLLSWKSY 116
           QCFNKCLNCKPCVAALVISQRH +++NN++VSNLEADL+PVP+DDAYYLLSWK +
Sbjct: 61  QCFNKCLNCKPCVAALVISQRH-NNNNNLVVSNLEADLLPVPEDDAYYLLSWKYF 104

[Close]
BLAST of ClCG06G011240 vs. NCBI nr
Match: XP_022933441.1 (EPIDERMAL PATTERNING FACTOR-like protein 8 isoform X2 [Cucurbita moschata] >KAG7021781.1 EPIDERMAL PATTERNING FACTOR-like protein 8, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 132.5 bits (332), Expect = 2.7e-27
Identity = 76/115 (66.09%), Postives = 81/115 (70.43%), Query Frame = 0 

Query: 1   MALKNSLLLILPLIFCLFISLPTSGHEDSSSSSSSSSSSSSFSSSSSSKQKELVIGSRPP 60
           MAL NSL LILPLIF L +  PTSG+ED                   SKQKEL IGSRPP
Sbjct: 1   MALNNSLFLILPLIFSLSVFHPTSGNED-------------------SKQKELAIGSRPP 60

Query: 61  QCFNKCLNCKPCVAALVISQRHKDDDNNI--IVSNLEADLIPVPKDDAYYLLSWK 114
           +CFNKCLNCKPCVAALVISQRHK DD+N   +VSNLEA    VPKDDAYYLLSWK
Sbjct: 61  KCFNKCLNCKPCVAALVISQRHKGDDSNNGGVVSNLEA--AQVPKDDAYYLLSWK 94

[Close]
BLAST of ClCG06G011240 vs. ExPASy Swiss-Prot
Match: Q1G3V9 (EPIDERMAL PATTERNING FACTOR-like protein 8 OS=Arabidopsis thaliana OX=3702 GN=EPFL8 PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 3.3e-04
Identity = 21/41 (51.22%), Postives = 26/41 (63.41%), Query Frame = 0 

Query: 49 KQKELVIGSRPPQCFNKCLNCKPCVAALV-ISQRHKDDDNN 89
          + KE V+GS PP C  KC NCKPC+  L  I   H DDD++
Sbjct: 40 RMKESVMGSEPPVCATKCRNCKPCLPYLFDIRGAHDDDDDS 80

[Close]
BLAST of ClCG06G011240 vs. ExPASy TrEMBL
Match: A0A1S3B8V6 (Epidermal patterning factor-like protein OS=Cucumis melo OX=3656 GN=LOC103487443 PE=3 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 5.8e-36
Identity = 87/115 (75.65%), Postives = 99/115 (86.09%), Query Frame = 0 

Query: 1   MALKNSLLLILPLIFCLFISLPTSGHEDSSSSSSSSSSSSSFSSSSSSKQKELVIGSRPP 60
           MALK+SLLLILPL+F LF+S PTSGHE + SS          SSSSSSKQKELVIGSRPP
Sbjct: 1   MALKHSLLLILPLLFSLFLSHPTSGHEQNFSS----------SSSSSSKQKELVIGSRPP 60

Query: 61  QCFNKCLNCKPCVAALVISQRHKDDDNNIIVSNLEADLIPVPKDDAYYLLSWKSY 116
           QCFNKCLNCKPCVAALVISQRH +++NN++VSNLEADL+PVP+DDAYYLLSWK +
Sbjct: 61  QCFNKCLNCKPCVAALVISQRH-NNNNNLVVSNLEADLLPVPEDDAYYLLSWKYF 104

[Close]
BLAST of ClCG06G011240 vs. ExPASy TrEMBL
Match: A0A6J1JFP8 (Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC111485317 PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.3e-27
Identity = 76/113 (67.26%), Postives = 83/113 (73.45%), Query Frame = 0 

Query: 1   MALKNSLLLILPLIFCLFISLPTSGHEDSSSSSSSSSSSSSFSSSSSSKQKELVIGSRPP 60
           MALK+SLLLILPLIF L +S PTSG+ED                  SS+QKELVIGSRPP
Sbjct: 1   MALKSSLLLILPLIFSLSLSHPTSGNED------------------SSRQKELVIGSRPP 60

Query: 61  QCFNKCLNCKPCVAALVISQRHKDDDNNIIVSNLEADLIPVPKDDAYYLLSWK 114
           +CFNKCLNC+PCVAALVISQRHK   NN   SNLEA L P P+DDAYYLLSWK
Sbjct: 61  RCFNKCLNCRPCVAALVISQRHKGVHNNAF-SNLEAAL-PAPRDDAYYLLSWK 93

[Close]
BLAST of ClCG06G011240 vs. ExPASy TrEMBL
Match: A0A6J1EZ19 (Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111440854 PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.3e-27
Identity = 76/115 (66.09%), Postives = 81/115 (70.43%), Query Frame = 0 

Query: 1   MALKNSLLLILPLIFCLFISLPTSGHEDSSSSSSSSSSSSSFSSSSSSKQKELVIGSRPP 60
           MAL NSL LILPLIF L +  PTSG+ED                   SKQKEL IGSRPP
Sbjct: 1   MALNNSLFLILPLIFSLSVFHPTSGNED-------------------SKQKELAIGSRPP 60

Query: 61  QCFNKCLNCKPCVAALVISQRHKDDDNNI--IVSNLEADLIPVPKDDAYYLLSWK 114
           +CFNKCLNCKPCVAALVISQRHK DD+N   +VSNLEA    VPKDDAYYLLSWK
Sbjct: 61  KCFNKCLNCKPCVAALVISQRHKGDDSNNGGVVSNLEA--AQVPKDDAYYLLSWK 94

[Close]
BLAST of ClCG06G011240 vs. ExPASy TrEMBL
Match: A0A6J1HB97 (Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111461746 PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 2.2e-27
Identity = 76/113 (67.26%), Postives = 83/113 (73.45%), Query Frame = 0 

Query: 1   MALKNSLLLILPLIFCLFISLPTSGHEDSSSSSSSSSSSSSFSSSSSSKQKELVIGSRPP 60
           MALK+SLLLILPLIF L +S PTSG+ED                  SSKQKELVIGSRPP
Sbjct: 1   MALKSSLLLILPLIFSLSLSHPTSGNED------------------SSKQKELVIGSRPP 60

Query: 61  QCFNKCLNCKPCVAALVISQRHKDDDNNIIVSNLEADLIPVPKDDAYYLLSWK 114
           +CFNKCLNC+PCVAALVISQRHK   NN   S+LEA L P P+DDAYYLLSWK
Sbjct: 61  RCFNKCLNCRPCVAALVISQRHKGVHNNAF-SSLEAAL-PAPRDDAYYLLSWK 93

[Close]
BLAST of ClCG06G011240 vs. ExPASy TrEMBL
Match: A0A6J1I4N2 (Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC111470622 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.9e-26
Identity = 75/115 (65.22%), Postives = 80/115 (69.57%), Query Frame = 0 

Query: 1   MALKNSLLLILPLIFCLFISLPTSGHEDSSSSSSSSSSSSSFSSSSSSKQKELVIGSRPP 60
           MAL NSL LILPLIF L + LPTSG+ED                   SKQKEL IGSRPP
Sbjct: 67  MALNNSLFLILPLIFSLSVFLPTSGNED-------------------SKQKELAIGSRPP 126

Query: 61  QCFNKCLNCKPCVAALVISQRHKDDDNNI--IVSNLEADLIPVPKDDAYYLLSWK 114
           +CFNKCLNCKPCVAALVISQR K  DNN   +VSN+EA    VPKDDAYYLLSWK
Sbjct: 127 KCFNKCLNCKPCVAALVISQRLKGYDNNNGGVVSNMEA--AQVPKDDAYYLLSWK 160

[Close]
BLAST of ClCG06G011240 vs. TAIR 10
Match: AT1G80133.1 (unknown protein; LOCATED IN: endomembrane system; Has 154 Blast hits to 154 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 154; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 46.2 bits (108), Expect = 2.4e-05
Identity = 21/41 (51.22%), Postives = 26/41 (63.41%), Query Frame = 0 

Query: 49 KQKELVIGSRPPQCFNKCLNCKPCVAALV-ISQRHKDDDNN 89
          + KE V+GS PP C  KC NCKPC+  L  I   H DDD++
Sbjct: 40 RMKESVMGSEPPVCATKCRNCKPCLPYLFDIRGAHDDDDDS 80

The following BLAST results are available for this feature:
BLAST of ClCG06G011240 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038879118.11.7e-4291.23EPIDERMAL PATTERNING FACTOR-like protein 8 [Benincasa hispida][more]
XP_031736064.14.9e-3778.45EPIDERMAL PATTERNING FACTOR-like protein 8 [Cucumis sativus][more]
KAE8653105.14.9e-3778.45hypothetical protein Csa_020083, partial [Cucumis sativus][more]
XP_008443990.11.2e-3575.65PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 1 [Cucumis melo][more]
XP_022933441.12.7e-2766.09EPIDERMAL PATTERNING FACTOR-like protein 8 isoform X2 [Cucurbita moschata] >KAG7... [more]
BLAST of ClCG06G011240 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q1G3V93.3e-0451.22EPIDERMAL PATTERNING FACTOR-like protein 8 OS=Arabidopsis thaliana OX=3702 GN=EP... [more]
BLAST of ClCG06G011240 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3B8V65.8e-3675.65Epidermal patterning factor-like protein OS=Cucumis melo OX=3656 GN=LOC103487443... [more]
A0A6J1JFP81.3e-2767.26Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC11148... [more]
A0A6J1EZ191.3e-2766.09Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1HB972.2e-2767.26Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1I4N21.9e-2665.22Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC11147... [more]
BLAST of ClCG06G011240 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G80133.12.4e-0551.22unknown protein; LOCATED IN: endomembrane system; Has 154 Blast hits to 154 prot... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF17181EPFcoord: 54..113
e-value: 6.0E-11
score: 42.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 25..52
NoneNo IPR availablePANTHERPTHR33109:SF57EPIDERMAL PATTERNING FACTOR-LIKE PROTEINcoord: 3..114
IPR039455EPIDERMAL PATTERNING FACTOR-like proteinPANTHERPTHR33109EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 4coord: 3..114

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG06G011240.2ClCG06G011240.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010052 guard cell differentiation
biological_process GO:0010374 stomatal complex development
cellular_component GO:0005576 extracellular region