ClCG02G013040 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG02G013040
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionBranched-chain amino acid aminotransferase
LocationCG_Chr02: 26810485 .. 26812263 (-)
RNA-Seq ExpressionClCG02G013040
SyntenyClCG02G013040
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTATTCTTGTGGTTTGCAACCAATGCAACAAATATACATGGAAGGGCTGTGGTCGCCACCTTCCTGAGCTCTACAAGGGCGTAGAGAAGGGAAAGCACTGCACTTGCCGCCCCTGGCCGGGCGTCGTCGTGCCACCGGAAGTTGTCGCCGACACGAAGACGCAACCGACTCAGTCAACAAACCCCAAATCATTTGTCCCTACAGGTATATCTATCATATGAACTCAACTTATTTGATAGTTAGTCTTTGTATATATTAATTTTTCTTTTCGAAATAGACATACAATTTGAAACTAATAAAAGTAGTTCTAAAAACTTTTTTGTTTTTAAAATTTGGCTAAGAATTTAAAAATGTTTATCTAAAAATATGAAAACAATTAAAAATTTATGAGAAAACAAACATAATTTTCGAAAATTAAAAACAAAAAACAATTATTTACGAAACATAGTTTTCCTTCTTTTTTCTTATTGATATTGAACAATGGACTTATTTACAAAACCTAGTTTTCCTTCCTTTTTCGTGAATATTGAACTATAAACTTCTTGGTTGCTAACACATCTATATATAAATTGGATTATACTCACTTTAACCTATAAATCTCAACTCCAACTTAAAAAATAATTATTACAATCACATTTCCAAATTGGAATAAAGTTGCCGAAATAAATTGATGCGAAAGTTGGAGAGTAAGAAAACTCTATATATAAATATTAGTTAATAATAAGAATAGAATTATGAGTAATAATAAAAAATTGAGTGGGGCGAAGAATGGGAATGAAAAATACACAATAAAAGCTTATTATTATGATTTATGAAGGTTGGGGCTAAGGTCAAATGTGGTAGTAACTTGGAAATTAAATGGTCTCCACATAAAAGTTAATGGTTTAGGATGAAATGTGGGTTAAAATTTTGGATGAGGATGGAGAAGGAATATTTCATAACAAAAATAGAATTTAGTAATAGGCTTATAAACAATTTTGAAACAAAGGGTAAGGATAAGCCTTGGGCACAAACATGTATGACATCAAATCACTCCTCATTTTAAAAAATACTCAAATAAATGCTTTTAAGAATTTAAACTCAATTTTAATATCATGAAAAATGCGTTTAAAAATATAAAATTAAAAATTAAATTGATTTGGAGTAATTAAAAGTGTATTTTAGAGTAATTTTAAATACAGTAAAAATGATTTTGATCATTTGAAAATCACTTCCATATATGTTAGTAAAATACATCATACAAAATAAAGTAATATTGAAAATTTTGATTAAAATCACTTTTTATAAAAAAATTAAGGACTAAAATCTCCAGGAGCAAAATTGAAAAACTTGAAATTGTATGGAAAAGTTTAGAGACAAAAATAAAATAAGCTTCGGAAACTAGAATATAAGAGTACTATCAAGTTGGCCCAAAAAAAAATTGCATATATATTCACTATAGTTGTTTTTTTTTTTTTTTTTTTTTTTTTGGTTAAATTACAAATTTGGTACCTATGATTATCGGTAACAGAAAGAGTTTACTTCCTATAATTTTAAAAGTTTTTTTCAAAAACGGACTATTTAGGAATATCTTTATTAAATCATAATGACTAAATTTGAAAAACAGAAAACTATATAAAAACTAAATTGTTATCAAACGGGGTGATTTTAAGATGAATGGTAAATCCAAATTTATGAATTTTGGTGTTTGTAATTTACTTATATATTTTGTAGGCATTGAGAGTTGGAGTTGGTTTGTGCAGGTAAGACAGTTGTTAAGGAAGCATAGGGAGTAG

mRNA sequence

ATGTGTATTCTTGTGGTTTGCAACCAATGCAACAAATATACATGGAAGGGCTGTGGTCGCCACCTTCCTGAGCTCTACAAGGGCGTAGAGAAGGGAAAGCACTGCACTTGCCGCCCCTGGCCGGGCGTCGTCGTGCCACCGGAAGTTGTCGCCGACACGAAGACGCAACCGACTCAGTCAACAAACCCCAAATCATTTGTCCCTACAGGCATTGAGAGTTGGAGTTGGTTTGTGCAGGTAAGACAGTTGTTAAGGAAGCATAGGGAGTAG

Coding sequence (CDS)

ATGTGTATTCTTGTGGTTTGCAACCAATGCAACAAATATACATGGAAGGGCTGTGGTCGCCACCTTCCTGAGCTCTACAAGGGCGTAGAGAAGGGAAAGCACTGCACTTGCCGCCCCTGGCCGGGCGTCGTCGTGCCACCGGAAGTTGTCGCCGACACGAAGACGCAACCGACTCAGTCAACAAACCCCAAATCATTTGTCCCTACAGGCATTGAGAGTTGGAGTTGGTTTGTGCAGGTAAGACAGTTGTTAAGGAAGCATAGGGAGTAG

Protein sequence

MCILVVCNQCNKYTWKGCGRHLPELYKGVEKGKHCTCRPWPGVVVPPEVVADTKTQPTQSTNPKSFVPTGIESWSWFVQVRQLLRKHRE
Homology
BLAST of ClCG02G013040 vs. NCBI nr
Match: KGN62035.1 (hypothetical protein Csa_006238 [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 1.1e-21
Identity = 51/70 (72.86%), Postives = 55/70 (78.57%), Query Frame = 0

Query: 1  MCILVVCNQCNKYTWKGCGRHLPELYKGVEKGKHCTCRPWPGVVVPPEVVADTKTQPTQS 60
          MC+LVVC  C+KYTWKGCGRHLP LYK VEKGKHC C PWPGVVVPPE V DT T+P+Q 
Sbjct: 1  MCMLVVCKDCSKYTWKGCGRHLPGLYKSVEKGKHCNCHPWPGVVVPPEDVPDT-TKPSQP 60

Query: 61 TNPKSFVPTG 71
            P S V TG
Sbjct: 61 VQPSS-VSTG 68

BLAST of ClCG02G013040 vs. NCBI nr
Match: KAG7035219.1 (hypothetical protein SDJN02_02014 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 104.0 bits (258), Expect = 6.9e-19
Identity = 46/71 (64.79%), Postives = 50/71 (70.42%), Query Frame = 0

Query: 1  MCILVVCNQCNKYTWKGCGRHLPELYKGVEKGKHCTCRPWPGVVVPP-EVVADTKTQPTQ 60
          MC LV C  CNK +WKGCG HLP+LY  +EKGKHCTCRPWPGVVV P +  AD KT P  
Sbjct: 1  MCYLVECKTCNKTSWKGCGNHLPDLYNRIEKGKHCTCRPWPGVVVVPLQDSADMKTAPPS 60

Query: 61 STNPKSFVPTG 71
            N KS VP G
Sbjct: 61 MANSKSSVPKG 71

BLAST of ClCG02G013040 vs. NCBI nr
Match: KAG6605256.1 (hypothetical protein SDJN03_02573, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 104.0 bits (258), Expect = 6.9e-19
Identity = 46/71 (64.79%), Postives = 50/71 (70.42%), Query Frame = 0

Query: 1  MCILVVCNQCNKYTWKGCGRHLPELYKGVEKGKHCTCRPWPGVVVPP-EVVADTKTQPTQ 60
          MC LV C  CNK +WKGCG HLP+LY  +EKGKHCTCRPWPGVVV P +  AD KT P  
Sbjct: 1  MCYLVECKTCNKTSWKGCGNHLPDLYNRIEKGKHCTCRPWPGVVVVPLQDSADMKTAPPS 60

Query: 61 STNPKSFVPTG 71
            N KS VP G
Sbjct: 61 MANSKSSVPEG 71

BLAST of ClCG02G013040 vs. NCBI nr
Match: KAA0045848.1 (hypothetical protein E6C27_scaffold243G003810 [Cucumis melo var. makuwa])

HSP 1 Score: 102.1 bits (253), Expect = 2.6e-18
Identity = 43/60 (71.67%), Postives = 47/60 (78.33%), Query Frame = 0

Query: 3  ILVVCNQCNKYTWKGCGRHLPELYKGVEKGKHCTCRPWPGVVVPPEVVADTKTQPTQSTN 62
          +LVVC  C+KYTWKGCGRHLP LYK VEKGKHC CRPWPGVVVPPE V   K    QS++
Sbjct: 1  MLVVCKDCSKYTWKGCGRHLPGLYKSVEKGKHCHCRPWPGVVVPPEDVPGLKPSNVQSSS 60

BLAST of ClCG02G013040 vs. NCBI nr
Match: OAY35386.1 (hypothetical protein MANES_12G097400v8 [Manihot esculenta])

HSP 1 Score: 89.7 bits (221), Expect = 1.3e-14
Identity = 34/62 (54.84%), Postives = 43/62 (69.35%), Query Frame = 0

Query: 1  MCILVVCNQCNKYTWKGCGRHLPELYKGVEKGKHCTCRPWPGVVVPPEVVADTKTQPTQS 60
          MCI V C QC KY+W GCG+HL  +Y  ++KGKHC CRPWPGV++P E    T+  P  S
Sbjct: 1  MCIRVDCKQCGKYSWSGCGKHLATIYGSIDKGKHCMCRPWPGVIIPTEKKPTTQPPPKTS 60

Query: 61 TN 63
          T+
Sbjct: 61 TS 62

BLAST of ClCG02G013040 vs. ExPASy TrEMBL
Match: A0A0A0LJK5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G287170 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 5.5e-22
Identity = 51/70 (72.86%), Postives = 55/70 (78.57%), Query Frame = 0

Query: 1  MCILVVCNQCNKYTWKGCGRHLPELYKGVEKGKHCTCRPWPGVVVPPEVVADTKTQPTQS 60
          MC+LVVC  C+KYTWKGCGRHLP LYK VEKGKHC C PWPGVVVPPE V DT T+P+Q 
Sbjct: 1  MCMLVVCKDCSKYTWKGCGRHLPGLYKSVEKGKHCNCHPWPGVVVPPEDVPDT-TKPSQP 60

Query: 61 TNPKSFVPTG 71
            P S V TG
Sbjct: 61 VQPSS-VSTG 68

BLAST of ClCG02G013040 vs. ExPASy TrEMBL
Match: A0A5A7TSL2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G003810 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.3e-18
Identity = 43/60 (71.67%), Postives = 47/60 (78.33%), Query Frame = 0

Query: 3  ILVVCNQCNKYTWKGCGRHLPELYKGVEKGKHCTCRPWPGVVVPPEVVADTKTQPTQSTN 62
          +LVVC  C+KYTWKGCGRHLP LYK VEKGKHC CRPWPGVVVPPE V   K    QS++
Sbjct: 1  MLVVCKDCSKYTWKGCGRHLPGLYKSVEKGKHCHCRPWPGVVVPPEDVPGLKPSNVQSSS 60

BLAST of ClCG02G013040 vs. ExPASy TrEMBL
Match: A0A2C9UV86 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_12G097400 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 6.5e-15
Identity = 34/62 (54.84%), Postives = 43/62 (69.35%), Query Frame = 0

Query: 1  MCILVVCNQCNKYTWKGCGRHLPELYKGVEKGKHCTCRPWPGVVVPPEVVADTKTQPTQS 60
          MCI V C QC KY+W GCG+HL  +Y  ++KGKHC CRPWPGV++P E    T+  P  S
Sbjct: 1  MCIRVDCKQCGKYSWSGCGKHLATIYGSIDKGKHCMCRPWPGVIIPTEKKPTTQPPPKTS 60

Query: 61 TN 63
          T+
Sbjct: 61 TS 62

BLAST of ClCG02G013040 vs. ExPASy TrEMBL
Match: U5G8E8 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_007G034000 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.4e-14
Identity = 37/73 (50.68%), Postives = 47/73 (64.38%), Query Frame = 0

Query: 1  MCILVVCNQCNKYTWKGCGRHLPELYKGVEKGKHCTCRPWPGVVVPPEVVADTKTQPTQS 60
          MC  V C QCNKY+W GCG HL  +Y G+EKGKHCTC+PWPGVV+  E  A  + QP ++
Sbjct: 1  MCYKVTCKQCNKYSWGGCGNHLTAVYAGIEKGKHCTCKPWPGVVILTEETA-AEQQPYRA 60

Query: 61 TNPKSFVPTGIES 74
           +  S      +S
Sbjct: 61 LSANSATKAAADS 72

BLAST of ClCG02G013040 vs. ExPASy TrEMBL
Match: A0A3N7F5W7 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_007G034000 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.2e-14
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 0

Query: 1  MCILVVCNQCNKYTWKGCGRHLPELYKGVEKGKHCTCRPWPGVVVPPEVVADTKTQPTQS 60
          MC  V C QCNKY+W GCG HL  +Y G+EKGKHCTC+PWPGVV+  E  A  + QP ++
Sbjct: 35 MCYKVTCKQCNKYSWGGCGNHLTAVYAGIEKGKHCTCKPWPGVVILTEETA-AEQQPYRA 94

Query: 61 TNPKS 66
           +  S
Sbjct: 95 LSANS 98

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN62035.11.1e-2172.86hypothetical protein Csa_006238 [Cucumis sativus][more]
KAG7035219.16.9e-1964.79hypothetical protein SDJN02_02014 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6605256.16.9e-1964.79hypothetical protein SDJN03_02573, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0045848.12.6e-1871.67hypothetical protein E6C27_scaffold243G003810 [Cucumis melo var. makuwa][more]
OAY35386.11.3e-1454.84hypothetical protein MANES_12G097400v8 [Manihot esculenta][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LJK55.5e-2272.86Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G287170 PE=4 SV=1[more]
A0A5A7TSL21.3e-1871.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A2C9UV866.5e-1554.84Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_12G097400 PE=4 SV=... [more]
U5G8E81.4e-1450.68Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_007G034000 PE=4 ... [more]
A0A3N7F5W73.2e-1455.38Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_007G034000 PE=4 ... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34724OS12G0596101 PROTEINcoord: 1..61
NoneNo IPR availablePANTHERPTHR34724:SF2OS12G0596101 PROTEINcoord: 1..61

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG02G013040.2ClCG02G013040.2mRNA