ClCG02G011640 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG02G011640
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Protein Ycf2-like
Location	CG_Chr02: 24590581 .. 24590946 (-)
RNA-Seq Expression	ClCG02G011640
Synteny	ClCG02G011640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAATTTACAGTTATCCGTATCACTCCAACTGATGATGAACTAAACTCTGTAAATTATCAATACTTCCTTAATGAACCACCAAATCAAGTTGTGAAAGAGGCTAGTGAGGAAAAAGAAGATGAAAGTGTTGAAGCTCCAAAAGAAGATGAAAATTTAAACAAACAGGAAAACAAAACATTAAGAGAAGAAATTCAAGAAGTGAAAGAGGAGTTGGAGAACTTGAAGAAAAATGTGGAAAATGGAGTAAATGAAGTCATGAGATTGTTGAACAACATCATGAATGCAATTACTGAAAGAATACCAATGCAAAAACAATCTCAAGACTTATTCCATGAAAATAATGCTCCCATAATCAGTCTATAG

mRNA sequence

ATGCAATTTACAGTTATCCGTATCACTCCAACTGATGATGAACTAAACTCTGTAAATTATCAATACTTCCTTAATGAACCACCAAATCAAGTTGTGAAAGAGGCTAGTGAGGAAAAAGAAGATGAAAGTGTTGAAGCTCCAAAAGAAGATGAAAATTTAAACAAACAGGAAAACAAAACATTAAGAGAAGAAATTCAAGAAGTGAAAGAGGAGTTGGAGAACTTGAAGAAAAATGTGGAAAATGGAGTAAATGAAGTCATGAGATTGTTGAACAACATCATGAATGCAATTACTGAAAGAATACCAATGCAAAAACAATCTCAAGACTTATTCCATGAAAATAATGCTCCCATAATCAGTCTATAG

Coding sequence (CDS)

ATGCAATTTACAGTTATCCGTATCACTCCAACTGATGATGAACTAAACTCTGTAAATTATCAATACTTCCTTAATGAACCACCAAATCAAGTTGTGAAAGAGGCTAGTGAGGAAAAAGAAGATGAAAGTGTTGAAGCTCCAAAAGAAGATGAAAATTTAAACAAACAGGAAAACAAAACATTAAGAGAAGAAATTCAAGAAGTGAAAGAGGAGTTGGAGAACTTGAAGAAAAATGTGGAAAATGGAGTAAATGAAGTCATGAGATTGTTGAACAACATCATGAATGCAATTACTGAAAGAATACCAATGCAAAAACAATCTCAAGACTTATTCCATGAAAATAATGCTCCCATAATCAGTCTATAG

Protein sequence

MQFTVIRITPTDDELNSVNYQYFLNEPPNQVVKEASEEKEDESVEAPKEDENLNKQENKTLREEIQEVKEELENLKKNVENGVNEVMRLLNNIMNAITERIPMQKQSQDLFHENNAPIISL

Homology

[Close]

BLAST of ClCG02G011640 vs. NCBI nr
Match: TYJ96590.1 (hypothetical protein E5676_scaffold1278G00080 [Cucumis melo var. makuwa])

HSP 1 Score: 124.8 bits (312), Expect = 5.1e-25
Identity = 70/119 (58.82%), Postives = 91/119 (76.47%), Query Frame = 0


Query: 3   FTVIRITPTDDELNSVNYQYFLNEPPNQVVKEASEEKEDESVEAPKEDENLNKQENKTLR 62
           FTVI  TPT DEL S N+Q+FLN+ PN+V KE SEE EDE+ +   E+E +N +  K+LR
Sbjct: 98  FTVIPFTPTSDELTSPNFQFFLNDAPNEVEKERSEETEDEN-DKGDEEETVNDETKKSLR 157

Query: 63  EEIQEVKEELENLKKNVENGVNEVMRLLNNIMNAITERIPMQKQSQDLFHENNAPIISL 122
           +EIQEVK++LE+LK  VENG NEV+ LLNNI+  I ER+P +KQSQ  +HEN+AP +SL
Sbjct: 158 KEIQEVKKDLESLKNTVENGQNEVLELLNNIITIINERMPTEKQSQGSYHENHAPTLSL 215

[Close]

BLAST of ClCG02G011640 vs. NCBI nr
Match: TYK15460.1 (hypothetical protein E5676_scaffold477G00300 [Cucumis melo var. makuwa])

HSP 1 Score: 124.8 bits (312), Expect = 5.1e-25
Identity = 70/119 (58.82%), Postives = 91/119 (76.47%), Query Frame = 0


Query: 3   FTVIRITPTDDELNSVNYQYFLNEPPNQVVKEASEEKEDESVEAPKEDENLNKQENKTLR 62
           FTVI  TPT DEL S N+Q+FLN+ PN+V KE SEE EDE+ +   E+E +N +  K+LR
Sbjct: 98  FTVIPFTPTSDELTSPNFQFFLNDAPNEVEKERSEETEDEN-DKGDEEETVNDETKKSLR 157

Query: 63  EEIQEVKEELENLKKNVENGVNEVMRLLNNIMNAITERIPMQKQSQDLFHENNAPIISL 122
           +EIQEVK++LE+LK  VENG NEV+ LLNNI+  I ER+P +KQSQ  +HEN+AP +SL
Sbjct: 158 KEIQEVKKDLESLKNTVENGQNEVLELLNNIITIINERMPTEKQSQGSYHENHAPTLSL 215

[Close]

BLAST of ClCG02G011640 vs. NCBI nr
Match: KAA0032264.1 (hypothetical protein E6C27_scaffold219G00980 [Cucumis melo var. makuwa])

HSP 1 Score: 124.4 bits (311), Expect = 6.7e-25
Identity = 70/119 (58.82%), Postives = 90/119 (75.63%), Query Frame = 0


Query: 3   FTVIRITPTDDELNSVNYQYFLNEPPNQVVKEASEEKEDESVEAPKEDENLNKQENKTLR 62
           FTVI  TPT DEL S N+Q+FLN+ PN+V KE SEE EDE+ +   E+E +N +  K+LR
Sbjct: 117 FTVIPFTPTSDELTSPNFQFFLNDAPNEVEKERSEETEDEN-DKGDEEETVNDETKKSLR 176

Query: 63  EEIQEVKEELENLKKNVENGVNEVMRLLNNIMNAITERIPMQKQSQDLFHENNAPIISL 122
           +EIQEVK +LE+LK  VENG NEV+ LLNNI+  I ER+P +KQSQ  +HEN+AP +SL
Sbjct: 177 KEIQEVKNDLESLKNTVENGQNEVLELLNNIITIINERMPTEKQSQGSYHENHAPTLSL 234

[Close]

BLAST of ClCG02G011640 vs. NCBI nr
Match: KAA0067880.1 (hypothetical protein E6C27_scaffold138G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 124.4 bits (311), Expect = 6.7e-25
Identity = 70/119 (58.82%), Postives = 92/119 (77.31%), Query Frame = 0


Query: 3   FTVIRITPTDDELNSVNYQYFLNEPPNQVVKEASEEKEDESVEAPKEDENLNKQENKTLR 62
           FTVI  TPT DEL S N+Q+FLN+ PN+V KE SEE EDE+ +   E+E +N +  K+LR
Sbjct: 98  FTVIPFTPTSDELISPNFQFFLNDAPNEVEKERSEETEDEN-DKGDEEETVNDETKKSLR 157

Query: 63  EEIQEVKEELENLKKNVENGVNEVMRLLNNIMNAITERIPMQKQSQDLFHENNAPIISL 122
           +EIQEVK++LE+LK  VENG NEV+ LLNNI+  I ER+P++KQSQ  +HEN+AP +SL
Sbjct: 158 KEIQEVKKDLESLKNTVENGKNEVLELLNNIITIINERMPIEKQSQGSYHENHAPTLSL 215

[Close]

BLAST of ClCG02G011640 vs. NCBI nr
Match: KAA0036929.1 (hypothetical protein E6C27_scaffold86G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 124.0 bits (310), Expect = 8.7e-25
Identity = 70/119 (58.82%), Postives = 91/119 (76.47%), Query Frame = 0


Query: 3   FTVIRITPTDDELNSVNYQYFLNEPPNQVVKEASEEKEDESVEAPKEDENLNKQENKTLR 62
           FTVI  TPT DEL S N+Q+FLN+ PN+V KE SEE EDE+ +   E+E +N +  K+LR
Sbjct: 98  FTVIPFTPTSDELTSPNFQFFLNDAPNEVEKERSEEIEDEN-DKGDEEETVNDETKKSLR 157

Query: 63  EEIQEVKEELENLKKNVENGVNEVMRLLNNIMNAITERIPMQKQSQDLFHENNAPIISL 122
           +EIQEVK++LE+LK  VENG NEV+ LLNNI+  I ER+P +KQSQ  +HEN+AP +SL
Sbjct: 158 KEIQEVKKDLESLKNTVENGQNEVLELLNNIITIINERMPTEKQSQGSYHENHAPTLSL 215

[Close]

BLAST of ClCG02G011640 vs. ExPASy TrEMBL
Match: A0A5D3CVR6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00300 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 2.5e-25
Identity = 70/119 (58.82%), Postives = 91/119 (76.47%), Query Frame = 0


Query: 3   FTVIRITPTDDELNSVNYQYFLNEPPNQVVKEASEEKEDESVEAPKEDENLNKQENKTLR 62
           FTVI  TPT DEL S N+Q+FLN+ PN+V KE SEE EDE+ +   E+E +N +  K+LR
Sbjct: 98  FTVIPFTPTSDELTSPNFQFFLNDAPNEVEKERSEETEDEN-DKGDEEETVNDETKKSLR 157

Query: 63  EEIQEVKEELENLKKNVENGVNEVMRLLNNIMNAITERIPMQKQSQDLFHENNAPIISL 122
           +EIQEVK++LE+LK  VENG NEV+ LLNNI+  I ER+P +KQSQ  +HEN+AP +SL
Sbjct: 158 KEIQEVKKDLESLKNTVENGQNEVLELLNNIITIINERMPTEKQSQGSYHENHAPTLSL 215

[Close]

BLAST of ClCG02G011640 vs. ExPASy TrEMBL
Match: A0A5D3B9P7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1278G00080 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 2.5e-25
Identity = 70/119 (58.82%), Postives = 91/119 (76.47%), Query Frame = 0


Query: 3   FTVIRITPTDDELNSVNYQYFLNEPPNQVVKEASEEKEDESVEAPKEDENLNKQENKTLR 62
           FTVI  TPT DEL S N+Q+FLN+ PN+V KE SEE EDE+ +   E+E +N +  K+LR
Sbjct: 98  FTVIPFTPTSDELTSPNFQFFLNDAPNEVEKERSEETEDEN-DKGDEEETVNDETKKSLR 157

Query: 63  EEIQEVKEELENLKKNVENGVNEVMRLLNNIMNAITERIPMQKQSQDLFHENNAPIISL 122
           +EIQEVK++LE+LK  VENG NEV+ LLNNI+  I ER+P +KQSQ  +HEN+AP +SL
Sbjct: 158 KEIQEVKKDLESLKNTVENGQNEVLELLNNIITIINERMPTEKQSQGSYHENHAPTLSL 215

[Close]

BLAST of ClCG02G011640 vs. ExPASy TrEMBL
Match: A0A5A7SM53 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G00980 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 3.2e-25
Identity = 70/119 (58.82%), Postives = 90/119 (75.63%), Query Frame = 0


Query: 3   FTVIRITPTDDELNSVNYQYFLNEPPNQVVKEASEEKEDESVEAPKEDENLNKQENKTLR 62
           FTVI  TPT DEL S N+Q+FLN+ PN+V KE SEE EDE+ +   E+E +N +  K+LR
Sbjct: 117 FTVIPFTPTSDELTSPNFQFFLNDAPNEVEKERSEETEDEN-DKGDEEETVNDETKKSLR 176

Query: 63  EEIQEVKEELENLKKNVENGVNEVMRLLNNIMNAITERIPMQKQSQDLFHENNAPIISL 122
           +EIQEVK +LE+LK  VENG NEV+ LLNNI+  I ER+P +KQSQ  +HEN+AP +SL
Sbjct: 177 KEIQEVKNDLESLKNTVENGQNEVLELLNNIITIINERMPTEKQSQGSYHENHAPTLSL 234

[Close]

BLAST of ClCG02G011640 vs. ExPASy TrEMBL
Match: A0A5A7VKZ2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G00340 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 3.2e-25
Identity = 70/119 (58.82%), Postives = 92/119 (77.31%), Query Frame = 0


Query: 3   FTVIRITPTDDELNSVNYQYFLNEPPNQVVKEASEEKEDESVEAPKEDENLNKQENKTLR 62
           FTVI  TPT DEL S N+Q+FLN+ PN+V KE SEE EDE+ +   E+E +N +  K+LR
Sbjct: 98  FTVIPFTPTSDELISPNFQFFLNDAPNEVEKERSEETEDEN-DKGDEEETVNDETKKSLR 157

Query: 63  EEIQEVKEELENLKKNVENGVNEVMRLLNNIMNAITERIPMQKQSQDLFHENNAPIISL 122
           +EIQEVK++LE+LK  VENG NEV+ LLNNI+  I ER+P++KQSQ  +HEN+AP +SL
Sbjct: 158 KEIQEVKKDLESLKNTVENGKNEVLELLNNIITIINERMPIEKQSQGSYHENHAPTLSL 215

[Close]

BLAST of ClCG02G011640 vs. ExPASy TrEMBL
Match: A0A5A7T6C2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00010 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 4.2e-25
Identity = 70/119 (58.82%), Postives = 91/119 (76.47%), Query Frame = 0


Query: 3   FTVIRITPTDDELNSVNYQYFLNEPPNQVVKEASEEKEDESVEAPKEDENLNKQENKTLR 62
           FTVI  TPT DEL S N+Q+FLN+ PN+V KE SEE EDE+ +   E+E +N +  K+LR
Sbjct: 98  FTVIPFTPTSDELTSPNFQFFLNDAPNEVEKERSEEIEDEN-DKGDEEETVNDETKKSLR 157

Query: 63  EEIQEVKEELENLKKNVENGVNEVMRLLNNIMNAITERIPMQKQSQDLFHENNAPIISL 122
           +EIQEVK++LE+LK  VENG NEV+ LLNNI+  I ER+P +KQSQ  +HEN+AP +SL
Sbjct: 158 KEIQEVKKDLESLKNTVENGQNEVLELLNNIITIINERMPTEKQSQGSYHENHAPTLSL 215

The following BLAST results are available for this feature:

BLAST of ClCG02G011640 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ96590.1	5.1e-25	58.82	hypothetical protein E5676_scaffold1278G00080 [Cucumis melo var. makuwa]	[more]
TYK15460.1	5.1e-25	58.82	hypothetical protein E5676_scaffold477G00300 [Cucumis melo var. makuwa]	[more]
KAA0032264.1	6.7e-25	58.82	hypothetical protein E6C27_scaffold219G00980 [Cucumis melo var. makuwa]	[more]
KAA0067880.1	6.7e-25	58.82	hypothetical protein E6C27_scaffold138G00340 [Cucumis melo var. makuwa]	[more]
KAA0036929.1	8.7e-25	58.82	hypothetical protein E6C27_scaffold86G00010 [Cucumis melo var. makuwa]	[more]

BLAST of ClCG02G011640 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG02G011640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CVR6	2.5e-25	58.82	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3B9P7	2.5e-25	58.82	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SM53	3.2e-25	58.82	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7VKZ2	3.2e-25	58.82	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7T6C2	4.2e-25	58.82	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of ClCG02G011640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 51..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G011640.1	ClCG02G011640.1	mRNA