ClCG02G011570 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG02G011570
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionReverse transcriptase domain-containing protein
LocationCG_Chr02: 24437692 .. 24438138 (-)
RNA-Seq ExpressionClCG02G011570
SyntenyClCG02G011570
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTACGGAATTGAGTTCAGATGGTAATATGGTGTTGCATTCTTTTCGGGATATAGAAGATGAAACATTGGGGTATTTCACTGATTTATACTCTAAAATCCCAGGTTCCAAATTCATTCCAGCAGGTTTACCTTGGCAGCAAGTCTCTATTTCACAGAATCATGCATTAATAGCTCCATTTCGGAAAGGTGAAACCTGGCAGCAAGTCTCTATTTCGCAGAATCATGCATTAATAGCTCCATTTCGGAAAGGTGTGACTATTGATGAAGACATTGTGAATTCCATGGCGAATAGATTGAAGTGCCAAGCTAGGAAATTACCTTTCTTATACTTGGGATTGCCTCTTGGAGGGTATCCAAAACAATATTCTTTTTGGCAACCAATAATTGACAAATTACATTTGAAGCTTGATAGATGGAAGAGGTACAATTTGTCAAGGAGGTAG

mRNA sequence

ATGATTACGGAATTGAGTTCAGATGGTAATATGGTGTTGCATTCTTTTCGGGATATAGAAGATGAAACATTGGGGTATTTCACTGATTTATACTCTAAAATCCCAGGTTCCAAATTCATTCCAGCAGGTTTACCTTGGCAGCAAGTCTCTATTTCACAGAATCATGCATTAATAGCTCCATTTCGGAAAGGTGAAACCTGGCAGCAAGTCTCTATTTCGCAGAATCATGCATTAATAGCTCCATTTCGGAAAGGTGTGACTATTGATGAAGACATTGTGAATTCCATGGCGAATAGATTGAAGTGCCAAGCTAGGAAATTACCTTTCTTATACTTGGGATTGCCTCTTGGAGGGTATCCAAAACAATATTCTTTTTGGCAACCAATAATTGACAAATTACATTTGAAGCTTGATAGATGGAAGAGGTACAATTTGTCAAGGAGGTAG

Coding sequence (CDS)

ATGATTACGGAATTGAGTTCAGATGGTAATATGGTGTTGCATTCTTTTCGGGATATAGAAGATGAAACATTGGGGTATTTCACTGATTTATACTCTAAAATCCCAGGTTCCAAATTCATTCCAGCAGGTTTACCTTGGCAGCAAGTCTCTATTTCACAGAATCATGCATTAATAGCTCCATTTCGGAAAGGTGAAACCTGGCAGCAAGTCTCTATTTCGCAGAATCATGCATTAATAGCTCCATTTCGGAAAGGTGTGACTATTGATGAAGACATTGTGAATTCCATGGCGAATAGATTGAAGTGCCAAGCTAGGAAATTACCTTTCTTATACTTGGGATTGCCTCTTGGAGGGTATCCAAAACAATATTCTTTTTGGCAACCAATAATTGACAAATTACATTTGAAGCTTGATAGATGGAAGAGGTACAATTTGTCAAGGAGGTAG

Protein sequence

MITELSSDGNMVLHSFRDIEDETLGYFTDLYSKIPGSKFIPAGLPWQQVSISQNHALIAPFRKGETWQQVSISQNHALIAPFRKGVTIDEDIVNSMANRLKCQARKLPFLYLGLPLGGYPKQYSFWQPIIDKLHLKLDRWKRYNLSRR
Homology
[Close]
BLAST of ClCG02G011570 vs. NCBI nr
Match: XP_038880332.1 (uncharacterized protein LOC120071973 [Benincasa hispida])

HSP 1 Score: 91.7 bits (226), Expect = 5.9e-15
Identity = 38/63 (60.32%), Postives = 51/63 (80.95%), Query Frame = 0 

Query: 85  GVTIDEDIVNSMANRLKCQARKLPFLYLGLPLGGYPKQYSFWQPIIDKLHLKLDRWKRYN 144
           G+ I+E+ + S+A +L C+ + LP +YLGLPLGGYPK  SFWQP+IDKL  KLD+W+R+N
Sbjct: 137 GINIEENKMLSVAAQLNCKVKHLPLMYLGLPLGGYPKNVSFWQPVIDKLQGKLDKWRRFN 196

Query: 145 LSR 148
           LSR
Sbjct: 197 LSR 199

[Close]
BLAST of ClCG02G011570 vs. NCBI nr
Match: TYJ97221.1 (putative LRR receptor-like serine/threonine-protein kinase [Cucumis melo var. makuwa])

HSP 1 Score: 90.5 bits (223), Expect = 1.3e-14
Identity = 36/63 (57.14%), Postives = 48/63 (76.19%), Query Frame = 0 

Query: 85  GVTIDEDIVNSMANRLKCQARKLPFLYLGLPLGGYPKQYSFWQPIIDKLHLKLDRWKRYN 144
           GV+I EDI+   A+R+ C+A  LP +YL LPLGGYP+   FWQP+ID++H KLDRWK +N
Sbjct: 29  GVSIPEDILLQTADRMSCKAENLPIVYLSLPLGGYPQHQDFWQPVIDRIHKKLDRWKHFN 88

Query: 145 LSR 148
           + R
Sbjct: 89  IPR 91

[Close]
BLAST of ClCG02G011570 vs. NCBI nr
Match: KAA0044242.1 (Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 87.8 bits (216), Expect = 8.5e-14
Identity = 37/63 (58.73%), Postives = 49/63 (77.78%), Query Frame = 0 

Query: 85  GVTIDEDIVNSMANRLKCQARKLPFLYLGLPLGGYPKQYSFWQPIIDKLHLKLDRWKRYN 144
           GV + +D +  MA +L C+  KLPFLYLGL LGGYP+Q  FW+P+ID++H KLDRWK +N
Sbjct: 49  GVNMGDDELLHMAGKLCCKVEKLPFLYLGLLLGGYPRQKVFWEPMIDRVHKKLDRWKMFN 108

Query: 145 LSR 148
           +SR
Sbjct: 109 ISR 111

[Close]
BLAST of ClCG02G011570 vs. NCBI nr
Match: XP_038889274.1 (uncharacterized protein LOC120079176 [Benincasa hispida])

HSP 1 Score: 82.8 bits (203), Expect = 2.7e-12
Identity = 35/63 (55.56%), Postives = 46/63 (73.02%), Query Frame = 0 

Query: 85  GVTIDEDIVNSMANRLKCQARKLPFLYLGLPLGGYPKQYSFWQPIIDKLHLKLDRWKRYN 144
           G+ +DE+ + S A  L C+A  LPF YLGLPLGGY K+ SFWQP+++    KLD+WK +N
Sbjct: 452 GINVDENELISTAASLNCKADHLPFSYLGLPLGGYLKKLSFWQPVLNNFQAKLDKWKHFN 511

Query: 145 LSR 148
           LSR
Sbjct: 512 LSR 514

[Close]
BLAST of ClCG02G011570 vs. NCBI nr
Match: RVW92050.1 (hypothetical protein CK203_037097 [Vitis vinifera])

HSP 1 Score: 80.5 bits (197), Expect = 1.4e-11
Identity = 45/148 (30.41%), Postives = 72/148 (48.65%), Query Frame = 0 

Query: 2   ITELSSDGNMVLHSFRDIEDETLGYFTDLYSKIPGSKFIPAGLPWQQVS--ISQNHALIA 61
           I EL ++  ++L++   I++E L YF  LY+   G  +   GL W  +S   +   +   
Sbjct: 368 IKELENESGLMLNNSESIKEEILRYFEKLYASPSGEPWRVEGLDWSPISGESASRASKRG 427

Query: 62  PFRKGETWQQVSISQNHALIAPFRKGVTIDE-DIVNSMANRLKCQARKLPFLYLGLPLGG 121
             R   + Q   +     L A       +DE +    +A  L  +A   P LYLGLP+GG
Sbjct: 428 TSRNHPSTQGAFVQGRQILDAVLIANEIVDEKEDQGRLAKMLDYKASGWPILYLGLPMGG 487

Query: 122 YPKQYSFWQPIIDKLHLKLDRWKRYNLS 147
            PK   FW P+I+++  +LD W++  LS
Sbjct: 488 NPKACGFWDPVIERISRRLDGWQKAYLS 515

[Close]
BLAST of ClCG02G011570 vs. ExPASy TrEMBL
Match: A0A5D3BF26 (Putative LRR receptor-like serine/threonine-protein kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G00080 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 6.3e-15
Identity = 36/63 (57.14%), Postives = 48/63 (76.19%), Query Frame = 0 

Query: 85  GVTIDEDIVNSMANRLKCQARKLPFLYLGLPLGGYPKQYSFWQPIIDKLHLKLDRWKRYN 144
           GV+I EDI+   A+R+ C+A  LP +YL LPLGGYP+   FWQP+ID++H KLDRWK +N
Sbjct: 29  GVSIPEDILLQTADRMSCKAENLPIVYLSLPLGGYPQHQDFWQPVIDRIHKKLDRWKHFN 88

Query: 145 LSR 148
           + R
Sbjct: 89  IPR 91

[Close]
BLAST of ClCG02G011570 vs. ExPASy TrEMBL
Match: A0A5A7TLN3 (Transposon Tf2-9 polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G006040 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 4.1e-14
Identity = 37/63 (58.73%), Postives = 49/63 (77.78%), Query Frame = 0 

Query: 85  GVTIDEDIVNSMANRLKCQARKLPFLYLGLPLGGYPKQYSFWQPIIDKLHLKLDRWKRYN 144
           GV + +D +  MA +L C+  KLPFLYLGL LGGYP+Q  FW+P+ID++H KLDRWK +N
Sbjct: 49  GVNMGDDELLHMAGKLCCKVEKLPFLYLGLLLGGYPRQKVFWEPMIDRVHKKLDRWKMFN 108

Query: 145 LSR 148
           +SR
Sbjct: 109 ISR 111

[Close]
BLAST of ClCG02G011570 vs. ExPASy TrEMBL
Match: A0A5D3D2G4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G002220 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.5e-11
Identity = 34/63 (53.97%), Postives = 46/63 (73.02%), Query Frame = 0 

Query: 85  GVTIDEDIVNSMANRLKCQARKLPFLYLGLPLGGYPKQYSFWQPIIDKLHLKLDRWKRYN 144
           GV I EDI+  + +R+  +A  LP  Y+GLPLGGYP++  FWQP+ID +H KL+RWK  N
Sbjct: 92  GVNISEDILLQIVDRIGYKAENLPIAYIGLPLGGYPRR-QFWQPVIDLIHKKLNRWKPVN 151

Query: 145 LSR 148
           +SR
Sbjct: 152 ISR 153

[Close]
BLAST of ClCG02G011570 vs. ExPASy TrEMBL
Match: A0A5A7U808 (Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G001400 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.5e-11
Identity = 35/62 (56.45%), Postives = 42/62 (67.74%), Query Frame = 0 

Query: 86  VTIDEDIVNSMANRLKCQARKLPFLYLGLPLGGYPKQYSFWQPIIDKLHLKLDRWKRYNL 145
           V I++   +S A+ L C+  KLP LY GLPLGGYPK   FWQP++DK   KL  WKR NL
Sbjct: 714 VNIEDSKTSSAASMLNCKIEKLPLLYQGLPLGGYPKSAHFWQPVLDKEQKKLHIWKRLNL 773

Query: 146 SR 148
           SR
Sbjct: 774 SR 775

[Close]
BLAST of ClCG02G011570 vs. ExPASy TrEMBL
Match: A0A5D3BQV1 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G001420 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 4.2e-11
Identity = 35/63 (55.56%), Postives = 44/63 (69.84%), Query Frame = 0 

Query: 85  GVTIDEDIVNSMANRLKCQARKLPFLYLGLPLGGYPKQYSFWQPIIDKLHLKLDRWKRYN 144
           G+ + E  + SMA  LK +   LP +YLGLPLGGY KQ S WQ + DK+H KLD+WKR+N
Sbjct: 218 GINVAESELLSMATTLKDKVDHLPVIYLGLPLGGYLKQISLWQLVSDKVHAKLDKWKRFN 277

Query: 145 LSR 148
            SR
Sbjct: 278 RSR 280

The following BLAST results are available for this feature:
BLAST of ClCG02G011570 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038880332.15.9e-1560.32uncharacterized protein LOC120071973 [Benincasa hispida][more]
TYJ97221.11.3e-1457.14putative LRR receptor-like serine/threonine-protein kinase [Cucumis melo var. ma... [more]
KAA0044242.18.5e-1458.73Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa][more]
XP_038889274.12.7e-1255.56uncharacterized protein LOC120079176 [Benincasa hispida][more]
RVW92050.11.4e-1130.41hypothetical protein CK203_037097 [Vitis vinifera][more]
BLAST of ClCG02G011570 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG02G011570 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BF266.3e-1557.14Putative LRR receptor-like serine/threonine-protein kinase OS=Cucumis melo var. ... [more]
A0A5A7TLN34.1e-1458.73Transposon Tf2-9 polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca... [more]
A0A5D3D2G42.5e-1153.97Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U8082.5e-1156.45Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo... [more]
A0A5D3BQV14.2e-1155.56Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... [more]
BLAST of ClCG02G011570 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG02G011570.2ClCG02G011570.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044260 cellular macromolecule metabolic process
biological_process GO:0006807 nitrogen compound metabolic process
biological_process GO:0016310 phosphorylation
biological_process GO:0044238 primary metabolic process
cellular_component GO:0016020 membrane
molecular_function GO:0016301 kinase activity
molecular_function GO:0000166 nucleotide binding