Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCACTCCCGAATCCTAGTCAGTGCATGGATCTCTTTCCGGTTTAAGCGATTTGCGGTGAAATATCTAAAGCCTCCAACGCACAAAGTCAAAGAAAACTTCTCGTCCACGCTTGACTCATAACCTAGATGGAGTTCCTATCCAATGTCCTGATTGGTCCAAGGATGAACTTTTGTTTCGTGGACTGAATATTGTGAACAAATTCAAAGATAGGGCTTATTTGGCCGCTTTTCTTTCCTGCTGGTTGTGCATGTTCATGTTTCCTGACAAACAAACTTTTGTTCATCAAGAGGTTTTTAAGGCAGCTAATCTTATGGTTGAAGGCCATATTTTTAGCCTTGTTGTTCCTATCTTGGCTAATATTTACAGTGGGTTGCACCGGGTTCACAATGTTTCTTGGTTTACTGGTTATTCGAATGCATGCTTTTCATTACATTATATTTATGGATGACTTGCCATTTATTTCAATACACATTACAGAGTTTCCACGAATGTCAGGGGTCCACTAATGGTTGGATTTTCTGGCGAAGGTGGAGTCGAATACTATATTAATTTTGAAGCTTGTGTACATATTCCCAAAGGTAAGTATGTGTCCTGACATGCATGTCTATAGAAACAAAATAAATATGATCTTTTAAACGATGATGGAAAGCTGACCTAGTGGCTTTCTTAATTCTTCGTGAGTATTCGATCCTGCTTCTTATCCTCATAGTGTGCGTCTTCCATGGTCATTGAGGCTTATAATCCTTATCGATTTGGTCGGTAACTTGGATTTTGCCAAGATGTTTTGTATGACTTGGATAAGGAAATCCTCAACGCTAATTTTGCCAATGTGTTGGGCCATTGGATGATATGCATTCGTGAAAATATATTGTCCCAAGTATATCTTCTACACGTGCATTAAACCTGCACACTCACATTACTTCCCACTATAGAAGTTGGTGGACAACAAAACATGGGAATTATCTTGAAGAAGGGATACAACATTTGGTAGATAGCTCATCTTTTTCTCTTGCCAAACCTAAATTTTCCAAGAAGACAGGAAATGACAATGGAGGCAAACATATTCGCATGCTTGAAACTGGTGGGCTTACCTTTGGGCATATTAAAAAAAGTGGAAGTAGTAATGAAGACCATTATTGAAAGAGAACCAAAAGGTCTGATAAACAACCGATTTGCAAAGAATGATTTTTTGACGGGGTTCCGAGCGTTCTAGAGTTTCTTGATATCACTACCCTCGTGGTAGGTGTTTGGTAATTTTTAAAACCCTTTTTCATAAGTCAATGTTCCATCTATTTACTTATTATTACCTTTGCTTTCTAGTCACCTTTAGATGATTGTATCCTAGATATTGGAGAAACATCGAAATTTTTTGTGAGTACATATGATTATAATTCTACTCGTGTTGGCAACTTTAAACCACCAATGGACACACTTGTGACTTCGACCTAACCTCTTGTAATAAAAGATCGTCCTAGGCAGGCACAAAAGACAATGTCCATGACTGCTTCAGAGGCTTCCCATTTTTGTGTCATCGACGTACTTTTTGATGTTTGA
mRNA sequence
ATGGATCACTCCCGAATCCTAGTCAGTGCATGGATCTCTTTCCGGTTTAAGCGATTTGCGGTGAAATATCTAAAGCCTCCAACGCACAAAGTCAAAGAAAACTTCTCAGTTTCCACGAATGTCAGGGGTCCACTAATGGTTGGATTTTCTGGCGAAGGTGGAGTCGAATACTATATTAATTTTGAAGCTTGTGTACATATTCCCAAAGTATTCGATCCTGCTTCTTATCCTCATAGTGTGCGTCTTCCATGGTCATTGAGGCTTATAATCCTTATCGATTTGGTCGGTAACTTGGATTTTGCCAAGATGTTTTGTATGACTTGGATAAGGAAATCCTCAACGCTAATTTTGCCAATTATATCTTCTACACGTGCATTAAACCTGCACACTCACATTACTTCCCACTATAGAAGTTGGTGGACAACAAAACATGGGAATTATCTTGAAGAAGGGATACAACATTTGGTAGATAGCTCATCTTTTTCTCTTGCCAAACCTAAATTTTCCAAGAAGACAGGAAATGACAATGGAGGCAAACATATTCGCATGCTTGAAACTGGTGGGCTTACCTTTGGGCATATTAAAAAAAGTGGAAGTAATCGTCCTAGGCAGGCACAAAAGACAATGTCCATGACTGCTTCAGAGGCTTCCCATTTTTGTGTCATCGACGTACTTTTTGATGTTTGA
Coding sequence (CDS)
ATGGATCACTCCCGAATCCTAGTCAGTGCATGGATCTCTTTCCGGTTTAAGCGATTTGCGGTGAAATATCTAAAGCCTCCAACGCACAAAGTCAAAGAAAACTTCTCAGTTTCCACGAATGTCAGGGGTCCACTAATGGTTGGATTTTCTGGCGAAGGTGGAGTCGAATACTATATTAATTTTGAAGCTTGTGTACATATTCCCAAAGTATTCGATCCTGCTTCTTATCCTCATAGTGTGCGTCTTCCATGGTCATTGAGGCTTATAATCCTTATCGATTTGGTCGGTAACTTGGATTTTGCCAAGATGTTTTGTATGACTTGGATAAGGAAATCCTCAACGCTAATTTTGCCAATTATATCTTCTACACGTGCATTAAACCTGCACACTCACATTACTTCCCACTATAGAAGTTGGTGGACAACAAAACATGGGAATTATCTTGAAGAAGGGATACAACATTTGGTAGATAGCTCATCTTTTTCTCTTGCCAAACCTAAATTTTCCAAGAAGACAGGAAATGACAATGGAGGCAAACATATTCGCATGCTTGAAACTGGTGGGCTTACCTTTGGGCATATTAAAAAAAGTGGAAGTAATCGTCCTAGGCAGGCACAAAAGACAATGTCCATGACTGCTTCAGAGGCTTCCCATTTTTGTGTCATCGACGTACTTTTTGATGTTTGA
Protein sequence
MDHSRILVSAWISFRFKRFAVKYLKPPTHKVKENFSVSTNVRGPLMVGFSGEGGVEYYINFEACVHIPKVFDPASYPHSVRLPWSLRLIILIDLVGNLDFAKMFCMTWIRKSSTLILPIISSTRALNLHTHITSHYRSWWTTKHGNYLEEGIQHLVDSSSFSLAKPKFSKKTGNDNGGKHIRMLETGGLTFGHIKKSGSNRPRQAQKTMSMTASEASHFCVIDVLFDV
Homology
BLAST of ClCG02G011040 vs. NCBI nr
Match:
KAA0050733.1 (uncharacterized protein E6C27_scaffold560G00370 [Cucumis melo var. makuwa] >TYJ95697.1 uncharacterized protein E5676_scaffold726G00240 [Cucumis melo var. makuwa])
HSP 1 Score: 96.3 bits (238), Expect = 3.7e-16
Identity = 60/146 (41.10%), Postives = 85/146 (58.22%), Query Frame = 0
Query: 34 NFSVSTNVRGPLMVGFSGEGGVEYYINFEACVHIPKVFDPASYPHSV----RLPWSLRLI 93
++ ST++RGP MV FSGEGG +YY N EA +HI K +P + +P+ L
Sbjct: 290 HYKASTSLRGPCMVEFSGEGGAKYYTNLEARMHIHK-GNPCRFGRQFGFYQDVPYDLSEK 349
Query: 94 ILIDLVGNLDFAKMFCMTWIRKS--STLILPIISSTRALNLH--THITSHYRSWWTTKHG 153
I + N+ + M C +R+S S + LP A LH HITSHY++WW KHG
Sbjct: 350 IPKANLANVRYHWMIC---VRESTLSQVYLP------APTLHPCNHITSHYKAWWLAKHG 409
Query: 154 NYLEEGIQHLVDSSSFSLAKPKFSKK 172
+YL+EG+Q+L+D + SL K K +KK
Sbjct: 410 DYLQEGLQNLIDRPTPSLIKSKTTKK 425
BLAST of ClCG02G011040 vs. NCBI nr
Match:
KAA0062705.1 (uncharacterized protein E6C27_scaffold382G00250 [Cucumis melo var. makuwa] >TYK20603.1 uncharacterized protein E5676_scaffold132G00240 [Cucumis melo var. makuwa])
HSP 1 Score: 83.6 bits (205), Expect = 2.5e-12
Identity = 51/150 (34.00%), Postives = 76/150 (50.67%), Query Frame = 0
Query: 34 NFSVSTNVRGPLMVGFSGEGGVEYYINFEACVHIPKVFDPASYPHSVRLPWSLRLIILID 93
++ T++RGP MV FSGEGG +YY N EA + + SY ++P + +I +
Sbjct: 160 HYKAPTSLRGPRMVEFSGEGGAKYYTNLEA-----RFYQDVSYDLGEKIPKANHWVICV- 219
Query: 94 LVGNLDFAKMFCMTWIRKSSTLILPIISSTRALNLHTHITSHYRSWWTTKHGNYLEEGIQ 153
+ STL + A + HITSHY++WW HG+YL+EG+Q
Sbjct: 220 -----------------RESTL-SQVYFPAPAFHPCNHITSHYKAWWLANHGDYLQEGLQ 279
Query: 154 HLVDSSSFSLAKPKFSKKT--GNDNGGKHI 182
+L+D + L K K +KK D+G K I
Sbjct: 280 NLIDRPTPPLIKSKTTKKIEYNCDSGNKKI 285
BLAST of ClCG02G011040 vs. NCBI nr
Match:
XP_031745312.1 (uncharacterized protein LOC116405439 [Cucumis sativus])
HSP 1 Score: 74.7 bits (182), Expect = 1.1e-09
Identity = 61/199 (30.65%), Postives = 84/199 (42.21%), Query Frame = 0
Query: 34 NFSVSTNVRGPLMVGFSGEGGVEYYINFEACVHIPK---VFDPASYPHSVR--------- 93
++ ++RGP MV FSGEGG +YY N EA HI K V A P +
Sbjct: 393 HYKAPRSLRGPRMVEFSGEGGAKYYTNLEARTHIHKGKYVSWHACLPTKNKDELLTDDGE 452
Query: 94 -LPWSLRLIILI-----------------------------------DLVGNLDFAKMF- 153
+ W+ I I DL + A F
Sbjct: 453 LISWNASFFISIRSCFLSSQCGSSTVIEPYSPCRFSRQFGFYQDVPYDLGEEIPEANFFN 512
Query: 154 ----CMTWIRKS--STLILPIISSTRALNLHTHITSHYRSWWTTKHGNYLEEGIQHLVDS 178
M IR++ S + LP+ A N TH+TSHY+ WW KHG+YL+EG+QHL+D
Sbjct: 513 VRYCWMICIRENTLSQVYLPV----SAPNPDTHVTSHYKVWWLAKHGDYLQEGVQHLIDR 572
BLAST of ClCG02G011040 vs. NCBI nr
Match:
KAA0031751.1 (hypothetical protein E6C27_scaffold506G00140 [Cucumis melo var. makuwa])
HSP 1 Score: 74.3 bits (181), Expect = 1.5e-09
Identity = 55/176 (31.25%), Postives = 79/176 (44.89%), Query Frame = 0
Query: 29 HKVKENFSVSTNVRGPLMVGFSGEGGVEYYINFEA--CVHIPKVFDPASYPHSVRLPWSL 88
H ++ + T VRGP M FSGEG Y+ +EA +H + R+ W
Sbjct: 97 HYFGTHYPLPTEVRGPKMTNFSGEGESIYFGEYEARELIH-----------NGARIQWHA 156
Query: 89 ---------RLIILIDLVG--------NLDFAKMFCMTWIRKSSTLILPIISSTRALNLH 148
R+ + D+ G N+ + C T S L LP TR+L
Sbjct: 157 SLQNRSKHERMDLPNDIGGMPPAITLDNILYHWRIC-TRRNTLSELYLP----TRSLEPC 216
Query: 149 THITSHYRSWWTTKHGNYLEEGIQHLVDSSSFSLAKPKFSKKTGNDNGGKHIRMLE 186
H+T + WWTTKHG Y E+ HLV S ++P+ K G++ GGK IR++E
Sbjct: 217 KHVTQRFTDWWTTKHGTYFEDNRHHLVSSVIPPPSQPRLPKNRGSNLGGKEIRLVE 256
BLAST of ClCG02G011040 vs. NCBI nr
Match:
KAA0057575.1 (hypothetical protein E6C27_scaffold497G00470 [Cucumis melo var. makuwa])
HSP 1 Score: 70.1 bits (170), Expect = 2.8e-08
Identity = 54/190 (28.42%), Postives = 78/190 (41.05%), Query Frame = 0
Query: 29 HKVKENFSVSTNVRGPLMVGFSGEGGVEYYINFEA--CVHIPKVFDPASYPHSVRLPWSL 88
H ++ + VRGP M FSGEGG Y+ +EA +H + R+ W
Sbjct: 226 HYFGTHYPLPREVRGPKMTNFSGEGGSIYFGKYEAHELIH-----------NGARIQWHA 285
Query: 89 RL-------------------IILIDL------------VGNLDFAKMFCMTWIRKSSTL 148
L + DL + N+ + CM S L
Sbjct: 286 NLHNRNKHERMVDTHDSSFLQMSYFDLPNDIGGMPPAITLDNILYHWRICMR-RNTLSEL 345
Query: 149 ILPIISSTRALNLHTHITSHYRSWWTTKHGNYLEEGIQHLVDSSSFSLAKPKFSKKTGND 186
LP R+L H+T + WWTTKHG Y E+ HLV S+ ++P+ K G++
Sbjct: 346 YLP----ARSLEPCKHVTQRFTDWWTTKHGTYFEDNRHHLVSSAIPPPSQPRLPKNRGSN 399
BLAST of ClCG02G011040 vs. ExPASy TrEMBL
Match:
A0A5A7U4C3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold726G00240 PE=4 SV=1)
HSP 1 Score: 96.3 bits (238), Expect = 1.8e-16
Identity = 60/146 (41.10%), Postives = 85/146 (58.22%), Query Frame = 0
Query: 34 NFSVSTNVRGPLMVGFSGEGGVEYYINFEACVHIPKVFDPASYPHSV----RLPWSLRLI 93
++ ST++RGP MV FSGEGG +YY N EA +HI K +P + +P+ L
Sbjct: 290 HYKASTSLRGPCMVEFSGEGGAKYYTNLEARMHIHK-GNPCRFGRQFGFYQDVPYDLSEK 349
Query: 94 ILIDLVGNLDFAKMFCMTWIRKS--STLILPIISSTRALNLH--THITSHYRSWWTTKHG 153
I + N+ + M C +R+S S + LP A LH HITSHY++WW KHG
Sbjct: 350 IPKANLANVRYHWMIC---VRESTLSQVYLP------APTLHPCNHITSHYKAWWLAKHG 409
Query: 154 NYLEEGIQHLVDSSSFSLAKPKFSKK 172
+YL+EG+Q+L+D + SL K K +KK
Sbjct: 410 DYLQEGLQNLIDRPTPSLIKSKTTKK 425
BLAST of ClCG02G011040 vs. ExPASy TrEMBL
Match:
A0A5D3DAL3 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold132G00240 PE=4 SV=1)
HSP 1 Score: 83.6 bits (205), Expect = 1.2e-12
Identity = 51/150 (34.00%), Postives = 76/150 (50.67%), Query Frame = 0
Query: 34 NFSVSTNVRGPLMVGFSGEGGVEYYINFEACVHIPKVFDPASYPHSVRLPWSLRLIILID 93
++ T++RGP MV FSGEGG +YY N EA + + SY ++P + +I +
Sbjct: 160 HYKAPTSLRGPRMVEFSGEGGAKYYTNLEA-----RFYQDVSYDLGEKIPKANHWVICV- 219
Query: 94 LVGNLDFAKMFCMTWIRKSSTLILPIISSTRALNLHTHITSHYRSWWTTKHGNYLEEGIQ 153
+ STL + A + HITSHY++WW HG+YL+EG+Q
Sbjct: 220 -----------------RESTL-SQVYFPAPAFHPCNHITSHYKAWWLANHGDYLQEGLQ 279
Query: 154 HLVDSSSFSLAKPKFSKKT--GNDNGGKHI 182
+L+D + L K K +KK D+G K I
Sbjct: 280 NLIDRPTPPLIKSKTTKKIEYNCDSGNKKI 285
BLAST of ClCG02G011040 vs. ExPASy TrEMBL
Match:
A0A5A7SQC9 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold506G00140 PE=4 SV=1)
HSP 1 Score: 74.3 bits (181), Expect = 7.2e-10
Identity = 55/176 (31.25%), Postives = 79/176 (44.89%), Query Frame = 0
Query: 29 HKVKENFSVSTNVRGPLMVGFSGEGGVEYYINFEA--CVHIPKVFDPASYPHSVRLPWSL 88
H ++ + T VRGP M FSGEG Y+ +EA +H + R+ W
Sbjct: 97 HYFGTHYPLPTEVRGPKMTNFSGEGESIYFGEYEARELIH-----------NGARIQWHA 156
Query: 89 ---------RLIILIDLVG--------NLDFAKMFCMTWIRKSSTLILPIISSTRALNLH 148
R+ + D+ G N+ + C T S L LP TR+L
Sbjct: 157 SLQNRSKHERMDLPNDIGGMPPAITLDNILYHWRIC-TRRNTLSELYLP----TRSLEPC 216
Query: 149 THITSHYRSWWTTKHGNYLEEGIQHLVDSSSFSLAKPKFSKKTGNDNGGKHIRMLE 186
H+T + WWTTKHG Y E+ HLV S ++P+ K G++ GGK IR++E
Sbjct: 217 KHVTQRFTDWWTTKHGTYFEDNRHHLVSSVIPPPSQPRLPKNRGSNLGGKEIRLVE 256
BLAST of ClCG02G011040 vs. ExPASy TrEMBL
Match:
A0A5A7UVI5 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold497G00470 PE=4 SV=1)
HSP 1 Score: 70.1 bits (170), Expect = 1.4e-08
Identity = 54/190 (28.42%), Postives = 78/190 (41.05%), Query Frame = 0
Query: 29 HKVKENFSVSTNVRGPLMVGFSGEGGVEYYINFEA--CVHIPKVFDPASYPHSVRLPWSL 88
H ++ + VRGP M FSGEGG Y+ +EA +H + R+ W
Sbjct: 226 HYFGTHYPLPREVRGPKMTNFSGEGGSIYFGKYEAHELIH-----------NGARIQWHA 285
Query: 89 RL-------------------IILIDL------------VGNLDFAKMFCMTWIRKSSTL 148
L + DL + N+ + CM S L
Sbjct: 286 NLHNRNKHERMVDTHDSSFLQMSYFDLPNDIGGMPPAITLDNILYHWRICMR-RNTLSEL 345
Query: 149 ILPIISSTRALNLHTHITSHYRSWWTTKHGNYLEEGIQHLVDSSSFSLAKPKFSKKTGND 186
LP R+L H+T + WWTTKHG Y E+ HLV S+ ++P+ K G++
Sbjct: 346 YLP----ARSLEPCKHVTQRFTDWWTTKHGTYFEDNRHHLVSSAIPPPSQPRLPKNRGSN 399
BLAST of ClCG02G011040 vs. ExPASy TrEMBL
Match:
A0A5A7U4K9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00980 PE=4 SV=1)
HSP 1 Score: 70.1 bits (170), Expect = 1.4e-08
Identity = 52/203 (25.62%), Postives = 81/203 (39.90%), Query Frame = 0
Query: 29 HKVKENFSVSTNVRGPLMVGFSGEGGVEYYINFEA--CVHIPKVFDPASYPHSVRLPWSL 88
H ++ +ST VRGP M FSGEGG Y+ +EA +H + R+ W
Sbjct: 98 HYFGTHYPLSTKVRGPKMTNFSGEGGSIYFGEYEARKLIH-----------NGARIQWHA 157
Query: 89 RL------IILIDL-------------VGNLDFAKMFCMTWIRKS--------------- 148
L ++D + + + + TWI S
Sbjct: 158 NLQNRSKHECMVDTHDSSFMQMSYFVSMRSCYLSSRYENTWIITSYSPYRGMPPAITLDN 217
Query: 149 ----------STLILPIISSTRALNLHTHITSHYRSWWTTKHGNYLEEGIQHLVDSSSFS 186
++ + R L + H+T + WWTTKHG Y E+ HLV S+
Sbjct: 218 ILYHCRICTRHNILSELYLPARLLEPYKHVTQRFTDWWTTKHGTYFEDNRHHLVSSAIPP 277
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAA0050733.1 | 3.7e-16 | 41.10 | uncharacterized protein E6C27_scaffold560G00370 [Cucumis melo var. makuwa] >TYJ9... | [more] |
| KAA0062705.1 | 2.5e-12 | 34.00 | uncharacterized protein E6C27_scaffold382G00250 [Cucumis melo var. makuwa] >TYK2... | [more] |
| XP_031745312.1 | 1.1e-09 | 30.65 | uncharacterized protein LOC116405439 [Cucumis sativus] | [more] |
| KAA0031751.1 | 1.5e-09 | 31.25 | hypothetical protein E6C27_scaffold506G00140 [Cucumis melo var. makuwa] | [more] |
| KAA0057575.1 | 2.8e-08 | 28.42 | hypothetical protein E6C27_scaffold497G00470 [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7U4C3 | 1.8e-16 | 41.10 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5D3DAL3 | 1.2e-12 | 34.00 | PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... | [more] |
| A0A5A7SQC9 | 7.2e-10 | 31.25 | PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... | [more] |
| A0A5A7UVI5 | 1.4e-08 | 28.42 | PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... | [more] |
| A0A5A7U4K9 | 1.4e-08 | 25.62 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
