ClCG02G011040 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG02G011040
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	PMD domain-containing protein
Location	CG_Chr02: 22813806 .. 22815365 (-)
RNA-Seq Expression	ClCG02G011040
Synteny	ClCG02G011040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCACTCCCGAATCCTAGTCAGTGCATGGATCTCTTTCCGGTTTAAGCGATTTGCGGTGAAATATCTAAAGCCTCCAACGCACAAAGTCAAAGAAAACTTCTCGTCCACGCTTGACTCATAACCTAGATGGAGTTCCTATCCAATGTCCTGATTGGTCCAAGGATGAACTTTTGTTTCGTGGACTGAATATTGTGAACAAATTCAAAGATAGGGCTTATTTGGCCGCTTTTCTTTCCTGCTGGTTGTGCATGTTCATGTTTCCTGACAAACAAACTTTTGTTCATCAAGAGGTTTTTAAGGCAGCTAATCTTATGGTTGAAGGCCATATTTTTAGCCTTGTTGTTCCTATCTTGGCTAATATTTACAGTGGGTTGCACCGGGTTCACAATGTTTCTTGGTTTACTGGTTATTCGAATGCATGCTTTTCATTACATTATATTTATGGATGACTTGCCATTTATTTCAATACACATTACAGAGTTTCCACGAATGTCAGGGGTCCACTAATGGTTGGATTTTCTGGCGAAGGTGGAGTCGAATACTATATTAATTTTGAAGCTTGTGTACATATTCCCAAAGGTAAGTATGTGTCCTGACATGCATGTCTATAGAAACAAAATAAATATGATCTTTTAAACGATGATGGAAAGCTGACCTAGTGGCTTTCTTAATTCTTCGTGAGTATTCGATCCTGCTTCTTATCCTCATAGTGTGCGTCTTCCATGGTCATTGAGGCTTATAATCCTTATCGATTTGGTCGGTAACTTGGATTTTGCCAAGATGTTTTGTATGACTTGGATAAGGAAATCCTCAACGCTAATTTTGCCAATGTGTTGGGCCATTGGATGATATGCATTCGTGAAAATATATTGTCCCAAGTATATCTTCTACACGTGCATTAAACCTGCACACTCACATTACTTCCCACTATAGAAGTTGGTGGACAACAAAACATGGGAATTATCTTGAAGAAGGGATACAACATTTGGTAGATAGCTCATCTTTTTCTCTTGCCAAACCTAAATTTTCCAAGAAGACAGGAAATGACAATGGAGGCAAACATATTCGCATGCTTGAAACTGGTGGGCTTACCTTTGGGCATATTAAAAAAAGTGGAAGTAGTAATGAAGACCATTATTGAAAGAGAACCAAAAGGTCTGATAAACAACCGATTTGCAAAGAATGATTTTTTGACGGGGTTCCGAGCGTTCTAGAGTTTCTTGATATCACTACCCTCGTGGTAGGTGTTTGGTAATTTTTAAAACCCTTTTTCATAAGTCAATGTTCCATCTATTTACTTATTATTACCTTTGCTTTCTAGTCACCTTTAGATGATTGTATCCTAGATATTGGAGAAACATCGAAATTTTTTGTGAGTACATATGATTATAATTCTACTCGTGTTGGCAACTTTAAACCACCAATGGACACACTTGTGACTTCGACCTAACCTCTTGTAATAAAAGATCGTCCTAGGCAGGCACAAAAGACAATGTCCATGACTGCTTCAGAGGCTTCCCATTTTTGTGTCATCGACGTACTTTTTGATGTTTGA

mRNA sequence

ATGGATCACTCCCGAATCCTAGTCAGTGCATGGATCTCTTTCCGGTTTAAGCGATTTGCGGTGAAATATCTAAAGCCTCCAACGCACAAAGTCAAAGAAAACTTCTCAGTTTCCACGAATGTCAGGGGTCCACTAATGGTTGGATTTTCTGGCGAAGGTGGAGTCGAATACTATATTAATTTTGAAGCTTGTGTACATATTCCCAAAGTATTCGATCCTGCTTCTTATCCTCATAGTGTGCGTCTTCCATGGTCATTGAGGCTTATAATCCTTATCGATTTGGTCGGTAACTTGGATTTTGCCAAGATGTTTTGTATGACTTGGATAAGGAAATCCTCAACGCTAATTTTGCCAATTATATCTTCTACACGTGCATTAAACCTGCACACTCACATTACTTCCCACTATAGAAGTTGGTGGACAACAAAACATGGGAATTATCTTGAAGAAGGGATACAACATTTGGTAGATAGCTCATCTTTTTCTCTTGCCAAACCTAAATTTTCCAAGAAGACAGGAAATGACAATGGAGGCAAACATATTCGCATGCTTGAAACTGGTGGGCTTACCTTTGGGCATATTAAAAAAAGTGGAAGTAATCGTCCTAGGCAGGCACAAAAGACAATGTCCATGACTGCTTCAGAGGCTTCCCATTTTTGTGTCATCGACGTACTTTTTGATGTTTGA

Coding sequence (CDS)

ATGGATCACTCCCGAATCCTAGTCAGTGCATGGATCTCTTTCCGGTTTAAGCGATTTGCGGTGAAATATCTAAAGCCTCCAACGCACAAAGTCAAAGAAAACTTCTCAGTTTCCACGAATGTCAGGGGTCCACTAATGGTTGGATTTTCTGGCGAAGGTGGAGTCGAATACTATATTAATTTTGAAGCTTGTGTACATATTCCCAAAGTATTCGATCCTGCTTCTTATCCTCATAGTGTGCGTCTTCCATGGTCATTGAGGCTTATAATCCTTATCGATTTGGTCGGTAACTTGGATTTTGCCAAGATGTTTTGTATGACTTGGATAAGGAAATCCTCAACGCTAATTTTGCCAATTATATCTTCTACACGTGCATTAAACCTGCACACTCACATTACTTCCCACTATAGAAGTTGGTGGACAACAAAACATGGGAATTATCTTGAAGAAGGGATACAACATTTGGTAGATAGCTCATCTTTTTCTCTTGCCAAACCTAAATTTTCCAAGAAGACAGGAAATGACAATGGAGGCAAACATATTCGCATGCTTGAAACTGGTGGGCTTACCTTTGGGCATATTAAAAAAAGTGGAAGTAATCGTCCTAGGCAGGCACAAAAGACAATGTCCATGACTGCTTCAGAGGCTTCCCATTTTTGTGTCATCGACGTACTTTTTGATGTTTGA

Protein sequence

MDHSRILVSAWISFRFKRFAVKYLKPPTHKVKENFSVSTNVRGPLMVGFSGEGGVEYYINFEACVHIPKVFDPASYPHSVRLPWSLRLIILIDLVGNLDFAKMFCMTWIRKSSTLILPIISSTRALNLHTHITSHYRSWWTTKHGNYLEEGIQHLVDSSSFSLAKPKFSKKTGNDNGGKHIRMLETGGLTFGHIKKSGSNRPRQAQKTMSMTASEASHFCVIDVLFDV

Homology

[Close]

BLAST of ClCG02G011040 vs. NCBI nr
Match: KAA0050733.1 (uncharacterized protein E6C27_scaffold560G00370 [Cucumis melo var. makuwa] >TYJ95697.1 uncharacterized protein E5676_scaffold726G00240 [Cucumis melo var. makuwa])

HSP 1 Score: 96.3 bits (238), Expect = 3.7e-16
Identity = 60/146 (41.10%), Postives = 85/146 (58.22%), Query Frame = 0


Query: 34  NFSVSTNVRGPLMVGFSGEGGVEYYINFEACVHIPKVFDPASYPHSV----RLPWSLRLI 93
           ++  ST++RGP MV FSGEGG +YY N EA +HI K  +P  +         +P+ L   
Sbjct: 290 HYKASTSLRGPCMVEFSGEGGAKYYTNLEARMHIHK-GNPCRFGRQFGFYQDVPYDLSEK 349

Query: 94  ILIDLVGNLDFAKMFCMTWIRKS--STLILPIISSTRALNLH--THITSHYRSWWTTKHG 153
           I    + N+ +  M C   +R+S  S + LP      A  LH   HITSHY++WW  KHG
Sbjct: 350 IPKANLANVRYHWMIC---VRESTLSQVYLP------APTLHPCNHITSHYKAWWLAKHG 409

Query: 154 NYLEEGIQHLVDSSSFSLAKPKFSKK 172
           +YL+EG+Q+L+D  + SL K K +KK
Sbjct: 410 DYLQEGLQNLIDRPTPSLIKSKTTKK 425

[Close]

BLAST of ClCG02G011040 vs. NCBI nr
Match: KAA0062705.1 (uncharacterized protein E6C27_scaffold382G00250 [Cucumis melo var. makuwa] >TYK20603.1 uncharacterized protein E5676_scaffold132G00240 [Cucumis melo var. makuwa])

HSP 1 Score: 83.6 bits (205), Expect = 2.5e-12
Identity = 51/150 (34.00%), Postives = 76/150 (50.67%), Query Frame = 0


Query: 34  NFSVSTNVRGPLMVGFSGEGGVEYYINFEACVHIPKVFDPASYPHSVRLPWSLRLIILID 93
           ++   T++RGP MV FSGEGG +YY N EA     + +   SY    ++P +   +I + 
Sbjct: 160 HYKAPTSLRGPRMVEFSGEGGAKYYTNLEA-----RFYQDVSYDLGEKIPKANHWVICV- 219

Query: 94  LVGNLDFAKMFCMTWIRKSSTLILPIISSTRALNLHTHITSHYRSWWTTKHGNYLEEGIQ 153
                            + STL   +     A +   HITSHY++WW   HG+YL+EG+Q
Sbjct: 220 -----------------RESTL-SQVYFPAPAFHPCNHITSHYKAWWLANHGDYLQEGLQ 279

Query: 154 HLVDSSSFSLAKPKFSKKT--GNDNGGKHI 182
           +L+D  +  L K K +KK     D+G K I
Sbjct: 280 NLIDRPTPPLIKSKTTKKIEYNCDSGNKKI 285

[Close]

BLAST of ClCG02G011040 vs. NCBI nr
Match: XP_031745312.1 (uncharacterized protein LOC116405439 [Cucumis sativus])

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-09
Identity = 61/199 (30.65%), Postives = 84/199 (42.21%), Query Frame = 0


Query: 34  NFSVSTNVRGPLMVGFSGEGGVEYYINFEACVHIPK---VFDPASYPHSVR--------- 93
           ++    ++RGP MV FSGEGG +YY N EA  HI K   V   A  P   +         
Sbjct: 393 HYKAPRSLRGPRMVEFSGEGGAKYYTNLEARTHIHKGKYVSWHACLPTKNKDELLTDDGE 452

Query: 94  -LPWSLRLIILI-----------------------------------DLVGNLDFAKMF- 153
            + W+    I I                                   DL   +  A  F 
Sbjct: 453 LISWNASFFISIRSCFLSSQCGSSTVIEPYSPCRFSRQFGFYQDVPYDLGEEIPEANFFN 512

Query: 154 ----CMTWIRKS--STLILPIISSTRALNLHTHITSHYRSWWTTKHGNYLEEGIQHLVDS 178
                M  IR++  S + LP+     A N  TH+TSHY+ WW  KHG+YL+EG+QHL+D 
Sbjct: 513 VRYCWMICIRENTLSQVYLPV----SAPNPDTHVTSHYKVWWLAKHGDYLQEGVQHLIDR 572

[Close]

BLAST of ClCG02G011040 vs. NCBI nr
Match: KAA0031751.1 (hypothetical protein E6C27_scaffold506G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 1.5e-09
Identity = 55/176 (31.25%), Postives = 79/176 (44.89%), Query Frame = 0


Query: 29  HKVKENFSVSTNVRGPLMVGFSGEGGVEYYINFEA--CVHIPKVFDPASYPHSVRLPWSL 88
           H    ++ + T VRGP M  FSGEG   Y+  +EA   +H           +  R+ W  
Sbjct: 97  HYFGTHYPLPTEVRGPKMTNFSGEGESIYFGEYEARELIH-----------NGARIQWHA 156

Query: 89  ---------RLIILIDLVG--------NLDFAKMFCMTWIRKSSTLILPIISSTRALNLH 148
                    R+ +  D+ G        N+ +    C T     S L LP    TR+L   
Sbjct: 157 SLQNRSKHERMDLPNDIGGMPPAITLDNILYHWRIC-TRRNTLSELYLP----TRSLEPC 216

Query: 149 THITSHYRSWWTTKHGNYLEEGIQHLVDSSSFSLAKPKFSKKTGNDNGGKHIRMLE 186
            H+T  +  WWTTKHG Y E+   HLV S     ++P+  K  G++ GGK IR++E
Sbjct: 217 KHVTQRFTDWWTTKHGTYFEDNRHHLVSSVIPPPSQPRLPKNRGSNLGGKEIRLVE 256

[Close]

BLAST of ClCG02G011040 vs. NCBI nr
Match: KAA0057575.1 (hypothetical protein E6C27_scaffold497G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 2.8e-08
Identity = 54/190 (28.42%), Postives = 78/190 (41.05%), Query Frame = 0


Query: 29  HKVKENFSVSTNVRGPLMVGFSGEGGVEYYINFEA--CVHIPKVFDPASYPHSVRLPWSL 88
           H    ++ +   VRGP M  FSGEGG  Y+  +EA   +H           +  R+ W  
Sbjct: 226 HYFGTHYPLPREVRGPKMTNFSGEGGSIYFGKYEAHELIH-----------NGARIQWHA 285

Query: 89  RL-------------------IILIDL------------VGNLDFAKMFCMTWIRKSSTL 148
            L                   +   DL            + N+ +    CM      S L
Sbjct: 286 NLHNRNKHERMVDTHDSSFLQMSYFDLPNDIGGMPPAITLDNILYHWRICMR-RNTLSEL 345

Query: 149 ILPIISSTRALNLHTHITSHYRSWWTTKHGNYLEEGIQHLVDSSSFSLAKPKFSKKTGND 186
            LP     R+L    H+T  +  WWTTKHG Y E+   HLV S+    ++P+  K  G++
Sbjct: 346 YLP----ARSLEPCKHVTQRFTDWWTTKHGTYFEDNRHHLVSSAIPPPSQPRLPKNRGSN 399

[Close]

BLAST of ClCG02G011040 vs. ExPASy TrEMBL
Match: A0A5A7U4C3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold726G00240 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.8e-16
Identity = 60/146 (41.10%), Postives = 85/146 (58.22%), Query Frame = 0


Query: 34  NFSVSTNVRGPLMVGFSGEGGVEYYINFEACVHIPKVFDPASYPHSV----RLPWSLRLI 93
           ++  ST++RGP MV FSGEGG +YY N EA +HI K  +P  +         +P+ L   
Sbjct: 290 HYKASTSLRGPCMVEFSGEGGAKYYTNLEARMHIHK-GNPCRFGRQFGFYQDVPYDLSEK 349

Query: 94  ILIDLVGNLDFAKMFCMTWIRKS--STLILPIISSTRALNLH--THITSHYRSWWTTKHG 153
           I    + N+ +  M C   +R+S  S + LP      A  LH   HITSHY++WW  KHG
Sbjct: 350 IPKANLANVRYHWMIC---VRESTLSQVYLP------APTLHPCNHITSHYKAWWLAKHG 409

Query: 154 NYLEEGIQHLVDSSSFSLAKPKFSKK 172
           +YL+EG+Q+L+D  + SL K K +KK
Sbjct: 410 DYLQEGLQNLIDRPTPSLIKSKTTKK 425

[Close]

BLAST of ClCG02G011040 vs. ExPASy TrEMBL
Match: A0A5D3DAL3 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold132G00240 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.2e-12
Identity = 51/150 (34.00%), Postives = 76/150 (50.67%), Query Frame = 0


Query: 34  NFSVSTNVRGPLMVGFSGEGGVEYYINFEACVHIPKVFDPASYPHSVRLPWSLRLIILID 93
           ++   T++RGP MV FSGEGG +YY N EA     + +   SY    ++P +   +I + 
Sbjct: 160 HYKAPTSLRGPRMVEFSGEGGAKYYTNLEA-----RFYQDVSYDLGEKIPKANHWVICV- 219

Query: 94  LVGNLDFAKMFCMTWIRKSSTLILPIISSTRALNLHTHITSHYRSWWTTKHGNYLEEGIQ 153
                            + STL   +     A +   HITSHY++WW   HG+YL+EG+Q
Sbjct: 220 -----------------RESTL-SQVYFPAPAFHPCNHITSHYKAWWLANHGDYLQEGLQ 279

Query: 154 HLVDSSSFSLAKPKFSKKT--GNDNGGKHI 182
           +L+D  +  L K K +KK     D+G K I
Sbjct: 280 NLIDRPTPPLIKSKTTKKIEYNCDSGNKKI 285

[Close]

BLAST of ClCG02G011040 vs. ExPASy TrEMBL
Match: A0A5A7SQC9 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold506G00140 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 7.2e-10
Identity = 55/176 (31.25%), Postives = 79/176 (44.89%), Query Frame = 0


Query: 29  HKVKENFSVSTNVRGPLMVGFSGEGGVEYYINFEA--CVHIPKVFDPASYPHSVRLPWSL 88
           H    ++ + T VRGP M  FSGEG   Y+  +EA   +H           +  R+ W  
Sbjct: 97  HYFGTHYPLPTEVRGPKMTNFSGEGESIYFGEYEARELIH-----------NGARIQWHA 156

Query: 89  ---------RLIILIDLVG--------NLDFAKMFCMTWIRKSSTLILPIISSTRALNLH 148
                    R+ +  D+ G        N+ +    C T     S L LP    TR+L   
Sbjct: 157 SLQNRSKHERMDLPNDIGGMPPAITLDNILYHWRIC-TRRNTLSELYLP----TRSLEPC 216

Query: 149 THITSHYRSWWTTKHGNYLEEGIQHLVDSSSFSLAKPKFSKKTGNDNGGKHIRMLE 186
            H+T  +  WWTTKHG Y E+   HLV S     ++P+  K  G++ GGK IR++E
Sbjct: 217 KHVTQRFTDWWTTKHGTYFEDNRHHLVSSVIPPPSQPRLPKNRGSNLGGKEIRLVE 256

[Close]

BLAST of ClCG02G011040 vs. ExPASy TrEMBL
Match: A0A5A7UVI5 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold497G00470 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.4e-08
Identity = 54/190 (28.42%), Postives = 78/190 (41.05%), Query Frame = 0


Query: 29  HKVKENFSVSTNVRGPLMVGFSGEGGVEYYINFEA--CVHIPKVFDPASYPHSVRLPWSL 88
           H    ++ +   VRGP M  FSGEGG  Y+  +EA   +H           +  R+ W  
Sbjct: 226 HYFGTHYPLPREVRGPKMTNFSGEGGSIYFGKYEAHELIH-----------NGARIQWHA 285

Query: 89  RL-------------------IILIDL------------VGNLDFAKMFCMTWIRKSSTL 148
            L                   +   DL            + N+ +    CM      S L
Sbjct: 286 NLHNRNKHERMVDTHDSSFLQMSYFDLPNDIGGMPPAITLDNILYHWRICMR-RNTLSEL 345

Query: 149 ILPIISSTRALNLHTHITSHYRSWWTTKHGNYLEEGIQHLVDSSSFSLAKPKFSKKTGND 186
            LP     R+L    H+T  +  WWTTKHG Y E+   HLV S+    ++P+  K  G++
Sbjct: 346 YLP----ARSLEPCKHVTQRFTDWWTTKHGTYFEDNRHHLVSSAIPPPSQPRLPKNRGSN 399

[Close]

BLAST of ClCG02G011040 vs. ExPASy TrEMBL
Match: A0A5A7U4K9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00980 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.4e-08
Identity = 52/203 (25.62%), Postives = 81/203 (39.90%), Query Frame = 0


Query: 29  HKVKENFSVSTNVRGPLMVGFSGEGGVEYYINFEA--CVHIPKVFDPASYPHSVRLPWSL 88
           H    ++ +ST VRGP M  FSGEGG  Y+  +EA   +H           +  R+ W  
Sbjct: 98  HYFGTHYPLSTKVRGPKMTNFSGEGGSIYFGEYEARKLIH-----------NGARIQWHA 157

Query: 89  RL------IILIDL-------------VGNLDFAKMFCMTWIRKS--------------- 148
            L        ++D              + +   +  +  TWI  S               
Sbjct: 158 NLQNRSKHECMVDTHDSSFMQMSYFVSMRSCYLSSRYENTWIITSYSPYRGMPPAITLDN 217

Query: 149 ----------STLILPIISSTRALNLHTHITSHYRSWWTTKHGNYLEEGIQHLVDSSSFS 186
                       ++  +    R L  + H+T  +  WWTTKHG Y E+   HLV S+   
Sbjct: 218 ILYHCRICTRHNILSELYLPARLLEPYKHVTQRFTDWWTTKHGTYFEDNRHHLVSSAIPP 277

The following BLAST results are available for this feature:

BLAST of ClCG02G011040 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050733.1	3.7e-16	41.10	uncharacterized protein E6C27_scaffold560G00370 [Cucumis melo var. makuwa] >TYJ9...	[more]
KAA0062705.1	2.5e-12	34.00	uncharacterized protein E6C27_scaffold382G00250 [Cucumis melo var. makuwa] >TYK2...	[more]
XP_031745312.1	1.1e-09	30.65	uncharacterized protein LOC116405439 [Cucumis sativus]	[more]
KAA0031751.1	1.5e-09	31.25	hypothetical protein E6C27_scaffold506G00140 [Cucumis melo var. makuwa]	[more]
KAA0057575.1	2.8e-08	28.42	hypothetical protein E6C27_scaffold497G00470 [Cucumis melo var. makuwa]	[more]

BLAST of ClCG02G011040 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG02G011040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U4C3	1.8e-16	41.10	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DAL3	1.2e-12	34.00	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7SQC9	7.2e-10	31.25	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7UVI5	1.4e-08	28.42	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7U4K9	1.4e-08	25.62	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of ClCG02G011040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G011040.1	ClCG02G011040.1	mRNA