ClCG02G006340 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG02G006340
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	RNA pseudouridine synthase 4, mitochondrial
Location	CG_Chr02: 7172992 .. 7177039 (-)
RNA-Seq Expression	ClCG02G006340
Synteny	ClCG02G006340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTATGATTCAATGGGCCAAGATAAATGATATCATTCGGCCCAGTAGACGTCAAGATGGGCCGTGTAGCCAATATACGTCGGCTTATTTCCTTGTTTTCGGTGTAAATACGAAATCCCTCCTTTTCGTTGTTCGTTTCCTAAACCGGCCCCCCGCCATGGTACTTCGGGCGCTCCTCCGTCGTTCCGTCATCCTCCGGACTTCCCCATCTTCGGCCGCTCCCGGCGGCGGAAGCTTCCATTTCTCAATTTTTCATGAGTTGAAGTCCACCTTAGCCTTGAGTAACACCACAGAAAACGTATCGGAACAGAAGAATGAAAAGGGAAGCAATAGATGGTTCACGTTGCCTCCATACACTACAACTGTAAACGGCTCGGTTTTAGGTAATCGTATATTGAACAGAGGAGCTCAAGCCGAAGCAGAAGCTTCCACTGTTTCAAACACTGCTCTGAAATGGGTGATTCGTTGCTGCCCGGAGCTGCCAAGGAGTCTCGTGCAAAAGCTATTTCGACTGAGAAAGGTTCCGTCCTCAATTTCACTTAATGCCTTAAGTTTTGTTTCTTATTGATTGTTCATGTGGTAGTTTGCATTGTCAGATTTCGAGTTTTTTGTTAAATTTACATCTTCCTCAGTTTATGAATCTTTTCCTTTTGATATATTTCAGGTTCGAAGAGGTTCTTCTACAATTGAAAATTCTGAATGTAATTTGGAAGCTGGAGACCAACTTAAAAGAGTGAGCAGTTATTTCCTATACTTAGATAGATATTATTTAGAGAACATTTGATTATGTACGCTGCTATGCATTAAAGAAGGTTATAATCATACTTTCCACATGGAAGAAAACTTCCTTAGATCTTTACTAACATGTTCAAGTTCTTGCAAGGTAGCAGCCAAGGACATTCTGAACGTAGGTGATCAAATTTTTCTCCCTATCTCCGTTCAAGTGTTCCCCAGAGAGAAAGCTCGGGGTTATTGCAATAAAGAAGAAGAGAAATTCATACACAGTTTAGTATTGTATAAGGTTTTCACTTTCCACTGTTCTTTCCCTCTCTGTAGTTCCTTTTGCTGCTTGTGACTCTTATTTATTTATTTTAATTGTGTCAGGATCCAGCAATACTTGTTATCAATAAACCTCCTGGCTTGCCCGTACAGGTATGACTTTCAACTTGTAAGTTTGATTGATCCTTTTGAATAGTCATGGTCTTAGTTTACAGAATTCTAGCAAATAAAAATGTTTCTGCAGGGTGGGATTGGTGTCAAAAGAAGTTTAGATGAATTGGCTGCAAGTTGTTTAAGATATGACTACTTGGAACCACCTCGACTAGTAAGTTTTTTATTAAATCATTGGTTTTGTTATGAAGACCATAAGCAGCAATCTTTTTCCAAATTCTTGAGAGTTTTACTTCTCTATGTTGAATTCAATTGGAAATATTGTACGTTGTGCTTGGTGTTAATTAGTGGCGTTTGTACATCACTTTAAAAGATTCACTGACTTTGTGTTAGACTTCATTAGCATGCCGTATAATGATTTAGAGGACATTTGTAGTGTCTTTCTAGTTTGATCTTTTCCCTTTGATGATGGGCATGTATTGAAATCTTTATCTTGTTACACAAAGATATGGCTTTGCTTATTGCTAGGTACACAGGCTTGACAGGGACAGCAGTGGCATCTTGATAATGGGCAGGACTTCTACAAGTACTTCAGTTCTTCATTCTGTCTTCCGTGAGAAAACTTTTGAGGCATCGACACATGTAGTTTTCTCTGTAATGTATTGTTTCTTAAGCAATATAAAAGCCTGATAGAGATATAAAAAAAAAAAAAAAAAAAAAAAAAAAACNTATTGAAATCTTTATCTTGTTACACAAAGATATGGCTTTGCTTATTGCTAGGTACACAGGCTTGACAGGGACAGCAGTGGCATCTTGATAATGGGCAGGACTTCTACAAGTACTTCAGTTCTTCATTCTGTCTTCCGTGAGAAAACTTTTGAGGCATCGACACATGTAGTTTTCTCTGTAATGTATTGTTTCTTAAGCAATATAAAAGCCTGATAGAGATATAAAAAAAAAAAAAAAAAAAAAAACAAAACGCAAATAAAGTATTTCTATTGTTCAAACTGACATGATTAATTCTTTTACTTTTCATTGCATTGAAGGCAAACCGTGTTGATAGTGAGAAAAAGTTTTTGGAAAAGAGGTATTGGGCACTTGTAATTGGTTCTCCTAGACGTTCAAAGGGGTTGATTACAGCCCCACTAGGAAAGGTTTGTATGTAATTTCTTTCAAGCAACTATCTTGGCTGTTTAATCTTAATACTGAATAACCATACATTTGCATTGGTTTCTTTGTGATTATCTGTTTCTTTCCTTGTATGTTGTCTTGAAATTTATGTGTGCTTCTGATGATATTAGATCGTGTTGGATGATGGAAGATCTGAGCAAATTATGGTCATTGACAATGCCGAATCTATGCCTTTTCAGCAAGCAATTACTAGATATAAAGTGATCAAATCTCATCATGGTTTGCACTTCCCCCTTTCTGTATGAAGCATTTAACGTTTCACTTTTGATTTTTCAAGCTGTAGACATAATTATAATCTGAATAGTGAAGGCACATTGGAACATTATACAAACATGCATCAAATTATAGACTATGTAGGTTTTTCGTTCCTTAGATTACTTGGGTAGTTTGTGTTAGCCGTTAGGTACATGAGATTATCTCTTGATCTTGTTTCTAATAAAGCTTGCATCTGAACATTCGACTGGAAAGGGACTTCTTTTTTCAATCGAGAGGGTAGGATATCACTGAGAACTTGCACACATTGTTACTCTTTCTATGTAGTTCAGAATGAGAAAATTCGAATGCCTCCTAAATAGCTAGAAGACAGCTTTGTGCTCAAGTAGTTGGATATTATTCTACTTGCCTGACTTTTAAAAGAATGTCTCACAAGTAAAAGAAAAAGCACTTTGCACGCCGAGAATTAACTGTTTTAAATAAAGCATCTCGATTAAAATAAATTCATTCATCTATAACTTGAACTGCCTATTTTATCTATGCTAAAGATAAAATATCAGATTCTGTTCATTTATTACAAGGCAATTGTGCAGGATACACTTGGTTGGAGCTGTGTCCCCTCACTGGAAGAAAACATCAGGTACCATCCAGCACCCCATAGCTCCAACTACAACAATAATTGATCTCATTTTCTACAGATTTTTCGCTGAATGTACCTTGCTGCATTTGCGTTTAATGCAGCTTCGTGTACACTGTGCGGAGGTATTAGGAACGCCTATAGTTGGAGACTACAAATATGGATGGCAAGCACATAGAAACTTGAAAGCATTTCATTCTAATTTCCACAAGAATCAAGGAAAGAAACAATCTCTCCCGTTTGGTCTTGACTTTGAAAGTGGAAGTATTGCAGAAAATAACCCTCGCCTACACCTTCATTGTAAGCAACTGAGTTTACCAGATGTTTCTTTTGCACTGCATAATGATTCTCTAGGTCATGACTGCTCAAGATTGGAATGTCTGGAGTTGGATGCTCCTTTGCCTTCATACATGCAAAGAAGTTGGGATATCATAAATAATTAAACTGCCATCAAAATTTCTCCTTTTGGTCTTCATTTTCCAAATGGAAGTAAACTTTCACCTCTTGAAAATGCTTTTACCCAATCTCTGCAAAATCATTCTAGAGATTATGACTTCTCAAGGACGGAATGACTAGGGTTGGATGCTCCTTTGCTCTCGTAAATGCAAAGAGATTGTGATATTGTATGTCATCAAATTCTCATTCATGCCGTACACTTTATAGTTTAAAGATCTATTAGGATGTATTTGGCATGTAGAGTTGAGTTGCTAATAATAGTCGGCATTTGGGATGAAGAGTTGACCTGAGTAGTAATAATTGTCTTGTCTTTCGGGTGTAAAGTTGAGTTGGTATCCACCTCTCAACTACACATGTTTTCTTAAATTTTTAACACTCATGTGAGATGTGTACTCAATAAATAAAAATATATTTTACAATTTTCTAAATGTAACTATGA

mRNA sequence

ATGTGTATGATTCAATGGGCCAAGATAAATGATATCATTCGGCCCAGTAGACGTCAAGATGGGCCGTGTAGCCAATATACGTCGGCTTATTTCCTTGTTTTCGGTGTAAATACGAAATCCCTCCTTTTCGTTGTTCGTTTCCTAAACCGGCCCCCCGCCATGGTACTTCGGGCGCTCCTCCGTCGTTCCGTCATCCTCCGGACTTCCCCATCTTCGGCCGCTCCCGGCGGCGGAAGCTTCCATTTCTCAATTTTTCATGAGTTGAAGTCCACCTTAGCCTTGAGTAACACCACAGAAAACGTATCGGAACAGAAGAATGAAAAGGGAAGCAATAGATGGTTCACGTTGCCTCCATACACTACAACTGTAAACGGCTCGGTTTTAGGTAATCGTATATTGAACAGAGGAGCTCAAGCCGAAGCAGAAGCTTCCACTGTTTCAAACACTGCTCTGAAATGGGTGATTCGTTGCTGCCCGGAGCTGCCAAGGAGTCTCGTGCAAAAGCTATTTCGACTGAGAAAGGTTCGAAGAGGTTCTTCTACAATTGAAAATTCTGAATGTAATTTGGAAGCTGGAGACCAACTTAAAAGAGTAGCAGCCAAGGACATTCTGAACGTAGGTGATCAAATTTTTCTCCCTATCTCCGTTCAAGTGTTCCCCAGAGAGAAAGCTCGGGGTTATTGCAATAAAGAAGAAGAGAAATTCATACACAGTTTAGTATTGTATAAGGATCCAGCAATACTTGTTATCAATAAACCTCCTGGCTTGCCCGTACAGGGTGGGATTGGTGTCAAAAGAAGTTTAGATGAATTGGCTGCAAGTTGTTTAAGATATGACTACTTGGAACCACCTCGACTAGTACACAGGCTTGACAGGGACAGCAGTGGCATCTTGATAATGGGCAGGACTTCTACAAGTACTTCAGTTCTTCATTCTGTCTTCCGTGAGAAAACTTTTGAGGCATCGACACATGCAAACCGTGTTGATAGTGAGAAAAAGTTTTTGGAAAAGAGGTATTGGGCACTTGTAATTGGTTCTCCTAGACGTTCAAAGGGGTTGATTACAGCCCCACTAGGAAAGATCGTGTTGGATGATGGAAGATCTGAGCAAATTATGGTCATTGACAATGCCGAATCTATGCCTTTTCAGCAAGCAATTACTAGATATAAAGTGATCAAATCTCATCATGGATACACTTGGTTGGAGCTGTGTCCCCTCACTGGAAGAAAACATCAGCTTCGTGTACACTGTGCGGAGGTATTAGGAACGCCTATAGTTGGAGACTACAAATATGGATGGCAAGCACATAGAAACTTGAAAGCATTTCATTCTAATTTCCACAAGAATCAAGGAAAGAAACAATCTCTCCCGTTTGGTCTTGACTTTGAAAGTGGAAGTATTGCAGAAAATAACCCTCGCCTACACCTTCATTGTAAGCAACTGAGTTTACCAGATGTTTCTTTTGCACTGCATAATGATTCTCTAGGTCATGACTGCTCAAGATTGGAATGTCTGGAGTTGGATGCTCCTTTGCCTTCATACATGCAAAGAAGTTGGGATATCATAAATAATTAAACTGCCATCAAAATTTCTCCTTTTGGTCTTCATTTTCCAAATGGAAGTAAACTTTCACCTCTTGAAAATGCTTTTACCCAATCTCTGCAAAATCATTCTAGAGATTATGACTTCTCAAGGACGGAATGACTAGGGTTGGATGCTCCTTTGCTCTCGTAAATGCAAAGAGATTGTGATATTGTATGTCATCAAATTCTCATTCATGCCGTACACTTTATAGTTTAAAGATCTATTAGGATGTATTTGGCATGTAGAGTTGAGTTGCTAATAATAGTCGGCATTTGGGATGAAGAGTTGACCTGAGTAGTAATAATTGTCTTGTCTTTCGGGTGTAAAGTTGAGTTGGTATCCACCTCTCAACTACACATGTTTTCTTAAATTTTTAACACTCATGTGAGATGTGTACTCAATAAATAAAAATATATTTTACAATTTTCTAAATGTAACTATGA

Coding sequence (CDS)

ATGTGTATGATTCAATGGGCCAAGATAAATGATATCATTCGGCCCAGTAGACGTCAAGATGGGCCGTGTAGCCAATATACGTCGGCTTATTTCCTTGTTTTCGGTGTAAATACGAAATCCCTCCTTTTCGTTGTTCGTTTCCTAAACCGGCCCCCCGCCATGGTACTTCGGGCGCTCCTCCGTCGTTCCGTCATCCTCCGGACTTCCCCATCTTCGGCCGCTCCCGGCGGCGGAAGCTTCCATTTCTCAATTTTTCATGAGTTGAAGTCCACCTTAGCCTTGAGTAACACCACAGAAAACGTATCGGAACAGAAGAATGAAAAGGGAAGCAATAGATGGTTCACGTTGCCTCCATACACTACAACTGTAAACGGCTCGGTTTTAGGTAATCGTATATTGAACAGAGGAGCTCAAGCCGAAGCAGAAGCTTCCACTGTTTCAAACACTGCTCTGAAATGGGTGATTCGTTGCTGCCCGGAGCTGCCAAGGAGTCTCGTGCAAAAGCTATTTCGACTGAGAAAGGTTCGAAGAGGTTCTTCTACAATTGAAAATTCTGAATGTAATTTGGAAGCTGGAGACCAACTTAAAAGAGTAGCAGCCAAGGACATTCTGAACGTAGGTGATCAAATTTTTCTCCCTATCTCCGTTCAAGTGTTCCCCAGAGAGAAAGCTCGGGGTTATTGCAATAAAGAAGAAGAGAAATTCATACACAGTTTAGTATTGTATAAGGATCCAGCAATACTTGTTATCAATAAACCTCCTGGCTTGCCCGTACAGGGTGGGATTGGTGTCAAAAGAAGTTTAGATGAATTGGCTGCAAGTTGTTTAAGATATGACTACTTGGAACCACCTCGACTAGTACACAGGCTTGACAGGGACAGCAGTGGCATCTTGATAATGGGCAGGACTTCTACAAGTACTTCAGTTCTTCATTCTGTCTTCCGTGAGAAAACTTTTGAGGCATCGACACATGCAAACCGTGTTGATAGTGAGAAAAAGTTTTTGGAAAAGAGGTATTGGGCACTTGTAATTGGTTCTCCTAGACGTTCAAAGGGGTTGATTACAGCCCCACTAGGAAAGATCGTGTTGGATGATGGAAGATCTGAGCAAATTATGGTCATTGACAATGCCGAATCTATGCCTTTTCAGCAAGCAATTACTAGATATAAAGTGATCAAATCTCATCATGGATACACTTGGTTGGAGCTGTGTCCCCTCACTGGAAGAAAACATCAGCTTCGTGTACACTGTGCGGAGGTATTAGGAACGCCTATAGTTGGAGACTACAAATATGGATGGCAAGCACATAGAAACTTGAAAGCATTTCATTCTAATTTCCACAAGAATCAAGGAAAGAAACAATCTCTCCCGTTTGGTCTTGACTTTGAAAGTGGAAGTATTGCAGAAAATAACCCTCGCCTACACCTTCATTGTAAGCAACTGAGTTTACCAGATGTTTCTTTTGCACTGCATAATGATTCTCTAGGTCATGACTGCTCAAGATTGGAATGTCTGGAGTTGGATGCTCCTTTGCCTTCATACATGCAAAGAAGTTGGGATATCATAAATAATTAA

Protein sequence

MCMIQWAKINDIIRPSRRQDGPCSQYTSAYFLVFGVNTKSLLFVVRFLNRPPAMVLRALLRRSVILRTSPSSAAPGGGSFHFSIFHELKSTLALSNTTENVSEQKNEKGSNRWFTLPPYTTTVNGSVLGNRILNRGAQAEAEASTVSNTALKWVIRCCPELPRSLVQKLFRLRKVRRGSSTIENSECNLEAGDQLKRVAAKDILNVGDQIFLPISVQVFPREKARGYCNKEEEKFIHSLVLYKDPAILVINKPPGLPVQGGIGVKRSLDELAASCLRYDYLEPPRLVHRLDRDSSGILIMGRTSTSTSVLHSVFREKTFEASTHANRVDSEKKFLEKRYWALVIGSPRRSKGLITAPLGKIVLDDGRSEQIMVIDNAESMPFQQAITRYKVIKSHHGYTWLELCPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRNLKAFHSNFHKNQGKKQSLPFGLDFESGSIAENNPRLHLHCKQLSLPDVSFALHNDSLGHDCSRLECLELDAPLPSYMQRSWDIINN

Homology

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BLAST of ClCG02G006340 vs. NCBI nr
Match: XP_038888757.1 (RNA pseudouridine synthase 4, mitochondrial [Benincasa hispida])

HSP 1 Score: 867.5 bits (2240), Expect = 6.0e-248
Identity = 426/470 (90.64%), Postives = 438/470 (93.19%), Query Frame = 0


Query: 54  MVLRALLRRSVILRTSPSSAAPGGGSFHFSIFHELKSTLALSNTTENVSEQKNEKGSNRW 113
           MVL AL+RRSVILR   SSAAP G SFHFSIFHELKSTLALSNTTE VS +KNEKGSNRW
Sbjct: 1   MVLPALIRRSVILRIPLSSAAPVGESFHFSIFHELKSTLALSNTTETVSHRKNEKGSNRW 60

Query: 114 FTLPPYTTTVNGSVLGNRILNRGAQAEAEASTVSNTALKWVIRCCPELPRSLVQKLFRLR 173
           FTLPPYT TVNGS+LGNRIL RG QAEAE ST + TALKWVIRCCPELPRSLVQKLFRLR
Sbjct: 61  FTLPPYTATVNGSLLGNRILKRGDQAEAEISTAAITALKWVIRCCPELPRSLVQKLFRLR 120

Query: 174 KVRRGSSTIENSECNLEAGDQLKRVAAKDILNVGDQIFLPISVQVFPREKARGYCNKEEE 233
           KVRRGSS I NSECNLEA DQLKRVAAKDILN+GDQIFLPISVQVFP EKAR YCNKEEE
Sbjct: 121 KVRRGSSMIGNSECNLEARDQLKRVAAKDILNIGDQIFLPISVQVFPTEKARDYCNKEEE 180

Query: 234 KFIHSLVLYKDPAILVINKPPGLPVQGGIGVKRSLDELAASCLRYDYLEPPRLVHRLDRD 293
           KFIHSLVLYKDPAILVINKPPGLPVQGGIGVKRSLDELAASCL YDY EPPRLVHRLDRD
Sbjct: 181 KFIHSLVLYKDPAILVINKPPGLPVQGGIGVKRSLDELAASCLSYDYSEPPRLVHRLDRD 240

Query: 294 SSGILIMGRTSTSTSVLHSVFREKTFEASTHANRVDSEKKFLEKRYWALVIGSPRRSKGL 353
           SSGILIMGRTSTSTS+LHSVFREKTFEAS HAN VDSEKK L+KRYWALVIGSPRRSKGL
Sbjct: 241 SSGILIMGRTSTSTSLLHSVFREKTFEASKHANHVDSEKKILQKRYWALVIGSPRRSKGL 300

Query: 354 ITAPLGKIVLDDGRSEQIMVIDNAESMPFQQAITRYKVIKSHHGYTWLELCPLTGRKHQL 413
           ITAPLGK V+DDGRSEQIMVIDNAESMPFQQAITRYKVIKSHHGYTWLELCP+TGRKHQL
Sbjct: 301 ITAPLGKFVMDDGRSEQIMVIDNAESMPFQQAITRYKVIKSHHGYTWLELCPVTGRKHQL 360

Query: 414 RVHCAEVLGTPIVGDYKYGWQAHRNLKAFHSNFHKNQGKKQSLPFGLDFESGSIAENNPR 473
           RVHCAEVLGTPIVGDYKYGWQAHRN K FHSNFHKN+GKKQS PFGLDFESGSIAENNPR
Sbjct: 361 RVHCAEVLGTPIVGDYKYGWQAHRNWKPFHSNFHKNEGKKQSFPFGLDFESGSIAENNPR 420

Query: 474 LHLHCKQLSLPDVSFALHNDSLGHDCSRLECLELDAPLPSYMQRSWDIIN 524
           LHLHCKQL+LPDVSFALHNDS+   CSRLECLELDAPLP YMQRSWDIIN
Sbjct: 421 LHLHCKQLTLPDVSFALHNDSIDQKCSRLECLELDAPLPLYMQRSWDIIN 470

[Close]

BLAST of ClCG02G006340 vs. NCBI nr
Match: XP_011658889.1 (RNA pseudouridine synthase 4, mitochondrial [Cucumis sativus] >KGN43951.2 hypothetical protein Csa_017092 [Cucumis sativus])

HSP 1 Score: 837.0 bits (2161), Expect = 8.7e-239
Identity = 414/471 (87.90%), Postives = 429/471 (91.08%), Query Frame = 0


Query: 54  MVLRALLRRSVILRTSPSSAAPGGGSFHFSIFHELKSTLALSNTTENVSEQKNEKGSNRW 113
           M LRAL R SVILRTSPS   P G   +FSIFH LKSTLALSN +E VS+QKNEKGSNRW
Sbjct: 1   MGLRALFRPSVILRTSPSCTDPSGEILYFSIFHVLKSTLALSNASEPVSQQKNEKGSNRW 60

Query: 114 FTLPPYTTTVNGSVLGNRILNRGAQAEAEASTVSNTALKWVIRCCPELPRSLVQKLFRLR 173
           FTLPPYT TVNGS+LGNRI+N G QAE  AST + TALKWVIRCCPELPRSLVQKLFRLR
Sbjct: 61  FTLPPYTATVNGSILGNRIMNGGGQAELGASTAAITALKWVIRCCPELPRSLVQKLFRLR 120

Query: 174 KVRRGSSTIENSECNLEAGDQLKRVAAKDILNVGDQIFLPISVQVFPREKARGYCNKEEE 233
           KVRRGSS IENSE NLEA DQLKRVAAKDILNVGDQIFLP+SVQVF  EK R YCNKEEE
Sbjct: 121 KVRRGSSMIENSEYNLEARDQLKRVAAKDILNVGDQIFLPMSVQVFSTEKTRDYCNKEEE 180

Query: 234 KFIHSLVLYKDPAILVINKPPGLPVQGGIGVKRSLDELAASCLRYDYLEPPRLVHRLDRD 293
            F+HSLVL+KDPAILVINKPPGLPVQGGIGVKRSLDELAASCL Y Y EPPRLVHRLDRD
Sbjct: 181 TFMHSLVLHKDPAILVINKPPGLPVQGGIGVKRSLDELAASCLSYGYSEPPRLVHRLDRD 240

Query: 294 SSGILIMGRTSTSTSVLHSVFREKTFEASTHANRVDSEKKFLEKRYWALVIGSPRRSKGL 353
           SSGILIMGRTSTSTS+LHSVFREKTFEAS HAN VDSEKK L KRYWALVIGSPRRSKGL
Sbjct: 241 SSGILIMGRTSTSTSLLHSVFREKTFEASKHANHVDSEKKILLKRYWALVIGSPRRSKGL 300

Query: 354 ITAPLGKIVLDDGRSEQIMVIDNAESMPFQQAITRYKVIKSHHGYTWLELCPLTGRKHQL 413
           ITAPLGKIVLDDGRSEQIMVIDNAE MPFQQAIT+YKVIKSHHGYTWLELCPLTGRKHQL
Sbjct: 301 ITAPLGKIVLDDGRSEQIMVIDNAEPMPFQQAITQYKVIKSHHGYTWLELCPLTGRKHQL 360

Query: 414 RVHCAEVLGTPIVGDYKYGWQAHRNLKAFHSNFHKNQGKKQSLPFGLDFESGSIAENNPR 473
           RVHCAEVLGTPIVGDYKYGWQAH+N K F SNFHKNQGKKQ LPFGLDFESGSIAENNPR
Sbjct: 361 RVHCAEVLGTPIVGDYKYGWQAHKNWKPFCSNFHKNQGKKQFLPFGLDFESGSIAENNPR 420

Query: 474 LHLHCKQLSLPDVSFALHNDSLGHDCSRLECLELDAPLPSYMQRSWDIINN 525
           LHLHCKQL+LPDVSFALHNDSL  DCSRLECLELDAPLPSYMQ+SWDIIN+
Sbjct: 421 LHLHCKQLTLPDVSFALHNDSLDRDCSRLECLELDAPLPSYMQKSWDIINS 471

[Close]

BLAST of ClCG02G006340 vs. NCBI nr
Match: XP_008454996.1 (PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Cucumis melo] >KAA0031338.1 RNA pseudouridine synthase 4 [Cucumis melo var. makuwa] >TYK06791.1 RNA pseudouridine synthase 4 [Cucumis melo var. makuwa])

HSP 1 Score: 833.6 bits (2152), Expect = 9.7e-238
Identity = 411/471 (87.26%), Postives = 425/471 (90.23%), Query Frame = 0


Query: 54  MVLRALLRRSVILRTSPSSAAPGGGSFHFSIFHELKSTLALSNTTENVSEQKNEKGSNRW 113
           MVL  L R SVILRTSPS   P     +FSIFH LKSTLALSN +E VS+QKNEKGSNRW
Sbjct: 1   MVLPPLFRPSVILRTSPSYTDPSSEILYFSIFHVLKSTLALSNASEPVSQQKNEKGSNRW 60

Query: 114 FTLPPYTTTVNGSVLGNRILNRGAQAEAEASTVSNTALKWVIRCCPELPRSLVQKLFRLR 173
           FTLPPYT TVN S+LGNRILNRGAQAE E ST + TALKWVI CCPELPRSLVQKLFRLR
Sbjct: 61  FTLPPYTATVNASILGNRILNRGAQAEVETSTAAITALKWVIHCCPELPRSLVQKLFRLR 120

Query: 174 KVRRGSSTIENSECNLEAGDQLKRVAAKDILNVGDQIFLPISVQVFPREKARGYCNKEEE 233
           KVRRGSS IENSE NLEA DQLKRVAAKDILNVGDQIFLPIS QVF  EK R YCNK+EE
Sbjct: 121 KVRRGSSMIENSEYNLEARDQLKRVAAKDILNVGDQIFLPISAQVFSTEKTRDYCNKDEE 180

Query: 234 KFIHSLVLYKDPAILVINKPPGLPVQGGIGVKRSLDELAASCLRYDYLEPPRLVHRLDRD 293
            F+HSLVLYKDPAILVINKPPGLPVQGGIGVKRSLDELAASCL Y Y EPPRLVHRLDRD
Sbjct: 181 TFMHSLVLYKDPAILVINKPPGLPVQGGIGVKRSLDELAASCLSYGYSEPPRLVHRLDRD 240

Query: 294 SSGILIMGRTSTSTSVLHSVFREKTFEASTHANRVDSEKKFLEKRYWALVIGSPRRSKGL 353
           SSGILIMGRTSTSTS+LHSVFREKTF+AS HAN VDSEKK L KRYWALVIGSPRRSKGL
Sbjct: 241 SSGILIMGRTSTSTSLLHSVFREKTFDASKHANHVDSEKKILLKRYWALVIGSPRRSKGL 300

Query: 354 ITAPLGKIVLDDGRSEQIMVIDNAESMPFQQAITRYKVIKSHHGYTWLELCPLTGRKHQL 413
           ITAPLGKIVLDDGRSE+IMVIDNAE MPFQQAITRYKVIKSHHGYTWLELCPLTGRKHQL
Sbjct: 301 ITAPLGKIVLDDGRSERIMVIDNAEPMPFQQAITRYKVIKSHHGYTWLELCPLTGRKHQL 360

Query: 414 RVHCAEVLGTPIVGDYKYGWQAHRNLKAFHSNFHKNQGKKQSLPFGLDFESGSIAENNPR 473
           RVHCAEVLGTPIVGDYKYGWQAH+N K FH NFHKNQGKKQ LPFGLDFESGSIAE NPR
Sbjct: 361 RVHCAEVLGTPIVGDYKYGWQAHKNWKPFHYNFHKNQGKKQFLPFGLDFESGSIAETNPR 420

Query: 474 LHLHCKQLSLPDVSFALHNDSLGHDCSRLECLELDAPLPSYMQRSWDIINN 525
           LHLHCKQL+LPDVSFALHNDSL  DCSRLECLELDAPLPSYMQ+SWDIIN+
Sbjct: 421 LHLHCKQLTLPDVSFALHNDSLDQDCSRLECLELDAPLPSYMQKSWDIINS 471

[Close]

BLAST of ClCG02G006340 vs. NCBI nr
Match: XP_023553811.1 (RNA pseudouridine synthase 4, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 828.2 bits (2138), Expect = 4.1e-236
Identity = 408/471 (86.62%), Postives = 425/471 (90.23%), Query Frame = 0


Query: 54  MVLRALLRRSVILRTSPSSAAPGGGSFHFSIFHELKSTLALSNTTENVSEQKNEKGSNRW 113
           MVL A+LRRSVI R+ PSSAAPGG S HFSIF E KST ALSN TE VSEQKNEKGSNRW
Sbjct: 1   MVLPAVLRRSVIRRSFPSSAAPGGESLHFSIFCERKSTFALSNATETVSEQKNEKGSNRW 60

Query: 114 FTLPPYTTTVNGSVLGNRILNRGAQAEAEASTVSNTALKWVIRCCPELPRSLVQKLFRLR 173
           FTLPP+T TVNGS LGNRI+N GAQAEAE ST + TALKWV RCCPELPRSLVQKLFRLR
Sbjct: 61  FTLPPFTATVNGSALGNRIMNGGAQAEAETSTTAITALKWVFRCCPELPRSLVQKLFRLR 120

Query: 174 KVRRGSSTIENSECNLEAGDQLKRVAAKDILNVGDQIFLPISVQVFPREKARGYCNKEEE 233
           KVRRGSS IENSECNLEA DQLKRVAA DILN+GD++ LPISVQVFP E+A   CNKEE+
Sbjct: 121 KVRRGSSMIENSECNLEARDQLKRVAANDILNIGDKLCLPISVQVFPTERAPDCCNKEEK 180

Query: 234 KFIHSLVLYKDPAILVINKPPGLPVQGGIGVKRSLDELAASCLRYDYLEPPRLVHRLDRD 293
           KFIHSLVLYKDPAIL INKPPGLPVQGGIGVKRSLDELAASCL YDY EPPRLVHRLDRD
Sbjct: 181 KFIHSLVLYKDPAILAINKPPGLPVQGGIGVKRSLDELAASCLSYDYSEPPRLVHRLDRD 240

Query: 294 SSGILIMGRTSTSTSVLHSVFREKTFEASTHANRVDSEKKFLEKRYWALVIGSPRRSKGL 353
           SSGILIMGRTSTSTSVLHS+FREKT  AS HAN VD EKK L+KRYWALVIGSPRR+KGL
Sbjct: 241 SSGILIMGRTSTSTSVLHSIFREKTLGASKHANHVDREKKILQKRYWALVIGSPRRTKGL 300

Query: 354 ITAPLGKIVLDDGRSEQIMVIDNAESMPFQQAITRYKVIKSHHGYTWLELCPLTGRKHQL 413
           ITAPL K+VLDDGRSEQIMV+DNAESMPFQ AIT YKVIK+HHGYTWLELCPLTGRKHQL
Sbjct: 301 ITAPLVKMVLDDGRSEQIMVVDNAESMPFQHAITTYKVIKTHHGYTWLELCPLTGRKHQL 360

Query: 414 RVHCAEVLGTPIVGDYKYGWQAHRNLKAFHSNFHKNQGKKQSLPFGLDFESGSIAENNPR 473
           RVHCAEVLGTPIVGDYKYGWQAHRN K F  N HKNQGKKQSLPFGLDFESGSIAENNPR
Sbjct: 361 RVHCAEVLGTPIVGDYKYGWQAHRNWKPFPHNSHKNQGKKQSLPFGLDFESGSIAENNPR 420

Query: 474 LHLHCKQLSLPDVSFALHNDSLGHDCSRLECLELDAPLPSYMQRSWDIINN 525
           LHLHCK L+LPDVS ALHNDSL HDCSRLE LELDAPLPSYMQRSWDIINN
Sbjct: 421 LHLHCKHLTLPDVSCALHNDSLDHDCSRLERLELDAPLPSYMQRSWDIINN 471

[Close]

BLAST of ClCG02G006340 vs. NCBI nr
Match: KAG7011636.1 (RNA pseudouridine synthase 4, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 825.5 bits (2131), Expect = 2.6e-235
Identity = 407/471 (86.41%), Postives = 425/471 (90.23%), Query Frame = 0


Query: 54  MVLRALLRRSVILRTSPSSAAPGGGSFHFSIFHELKSTLALSNTTENVSEQKNEKGSNRW 113
           MV  A+LRRSVI R+ PSSAAPGG S HFSIF E KST ALS+ TE VSEQKNEKGSNRW
Sbjct: 1   MVFPAVLRRSVIRRSFPSSAAPGGESLHFSIFCERKSTFALSSATETVSEQKNEKGSNRW 60

Query: 114 FTLPPYTTTVNGSVLGNRILNRGAQAEAEASTVSNTALKWVIRCCPELPRSLVQKLFRLR 173
           FTLPP+T T NGS LGNRI+N GAQAEAE ST + TALKWV RCCPELPRSLVQKLFRLR
Sbjct: 61  FTLPPFTATANGSALGNRIMNGGAQAEAETSTTAITALKWVFRCCPELPRSLVQKLFRLR 120

Query: 174 KVRRGSSTIENSECNLEAGDQLKRVAAKDILNVGDQIFLPISVQVFPREKARGYCNKEEE 233
           KVRRGSS IENSECNLEA DQLKRVAA DILN+GD++ LPISVQVFP E+A   CNKEE+
Sbjct: 121 KVRRGSSMIENSECNLEARDQLKRVAANDILNIGDKLCLPISVQVFPTERAPDCCNKEEK 180

Query: 234 KFIHSLVLYKDPAILVINKPPGLPVQGGIGVKRSLDELAASCLRYDYLEPPRLVHRLDRD 293
           KFIHSLVLYKDPAIL INKPPGLPVQGGIGVKRSLD+LAASCL YDY EPPRLVHRLDRD
Sbjct: 181 KFIHSLVLYKDPAILAINKPPGLPVQGGIGVKRSLDQLAASCLSYDYSEPPRLVHRLDRD 240

Query: 294 SSGILIMGRTSTSTSVLHSVFREKTFEASTHANRVDSEKKFLEKRYWALVIGSPRRSKGL 353
           SSGILIMGRTSTSTSVLHS+FREKT  AS HAN VDSEKK L+KRYWALVIGSPRR+KGL
Sbjct: 241 SSGILIMGRTSTSTSVLHSIFREKTLGASKHANHVDSEKKILQKRYWALVIGSPRRTKGL 300

Query: 354 ITAPLGKIVLDDGRSEQIMVIDNAESMPFQQAITRYKVIKSHHGYTWLELCPLTGRKHQL 413
           ITAPL K+VLDDGRSEQIMVIDNAESMPFQ AIT YKVIKSHHGYTWLELCPLTGRKHQL
Sbjct: 301 ITAPLVKMVLDDGRSEQIMVIDNAESMPFQHAITTYKVIKSHHGYTWLELCPLTGRKHQL 360

Query: 414 RVHCAEVLGTPIVGDYKYGWQAHRNLKAFHSNFHKNQGKKQSLPFGLDFESGSIAENNPR 473
           RVHCAEVLGTPIVGDYKYGWQAHRN K F  N HKNQGKKQSLPFGLDFESGSIAEN+PR
Sbjct: 361 RVHCAEVLGTPIVGDYKYGWQAHRNWKPFPHNSHKNQGKKQSLPFGLDFESGSIAENSPR 420

Query: 474 LHLHCKQLSLPDVSFALHNDSLGHDCSRLECLELDAPLPSYMQRSWDIINN 525
           LHLHCKQL+LPDVS ALHNDSL HDCSRLE LELDAPLPSYMQRSWDIINN
Sbjct: 421 LHLHCKQLTLPDVSCALHNDSLDHDCSRLERLELDAPLPSYMQRSWDIINN 471

[Close]

BLAST of ClCG02G006340 vs. ExPASy Swiss-Prot
Match: Q9LT72 (RNA pseudouridine synthase 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g19440 PE=2 SV=1)

HSP 1 Score: 458.8 bits (1179), Expect = 8.5e-128
Identity = 235/441 (53.29%), Postives = 309/441 (70.07%), Query Frame = 0


Query: 93  ALSNTTENVSEQKNEKGSNRWFTLPPYTTTVNGSVLGNRILNRGAQAEAEASTVSNTALK 152
           A   +T + S  + +    +W TLPP++ T++G+ +G  +L+ G   ++       TAL+
Sbjct: 35  AAHQSTRSYSTTQTDDSRGKWLTLPPFSPTIDGTAVGKDLLSDGDSVKSSTDNSKTTALR 94

Query: 153 WVIRCCPELPRSLVQKLFRLRKVRRG-SSTIENSECNLEAGDQLKRVAAKDILNVGDQIF 212
           W++RC P+LPR+LVQKLFRLR+VRR  S +++  E       QLKRVAAK+ LNVGD+I+
Sbjct: 95  WILRCRPDLPRTLVQKLFRLRQVRREMSMSVDGDELQ---RSQLKRVAAKESLNVGDRIY 154

Query: 213 LPISV-----QVFPREKARGYCNKEEEKFIHSLVLYKDPAILVINKPPGLPVQGGIGVKR 272
           LP+SV     Q  P +K    C+ EE KF+ SLVLYKDPAI+V+NKP GL VQGG G+K 
Sbjct: 155 LPLSVDNDTPQTPPAKKESFQCSDEERKFVCSLVLYKDPAIIVLNKPHGLAVQGGSGIKT 214

Query: 273 SLDELAASCLRYDYLEPPRLVHRLDRDSSGILIMGRTSTSTSVLHSVFREKTFEASTHAN 332
           S+DELAASCL++D  E PRLVHRLDRD SG+L++ RT T+ +VLHS+FREKT  AS +  
Sbjct: 215 SIDELAASCLKFDKSESPRLVHRLDRDCSGLLVLARTQTAATVLHSIFREKTTGASAYG- 274

Query: 333 RVDSEKKFLEKRYWALVIGSPRRSKGLITAPLGKIVLDDGRSEQIMVIDNAESMPFQQAI 392
            V    K L+++Y ALVIG P R +G I+APL K+V+DDG+SE+I V DN E +  Q AI
Sbjct: 275 -VKKNVKSLKRKYMALVIGCPPRQRGQISAPLRKVVVDDGKSERITVNDNGELVSTQHAI 334

Query: 393 TRYKVIKSH-HGYTWLELCPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRNLKAFHSN 452
           T Y+VI+S  HGYTWLEL PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAH+  + F S+
Sbjct: 335 TEYRVIESSPHGYTWLELRPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKAREPFVSS 394

Query: 453 FHKNQGKKQSLPFGLDFESGSIAENNPRLHLHCKQLSLPDVSFALH--NDSLGHDCSRLE 512
              N  K+ S PFGLD + G ++   P LHLH KQ+ LP++S  L     S   D S L+
Sbjct: 395 -ENNPTKQSSSPFGLDLDGGDVSSKQPHLHLHSKQIDLPNISQLLEKMQVSSDSDISDLD 454

Query: 513 CLELDAPLPSYMQRSWDIINN 525
            L+ DAPLPS+MQ S++++ +
Sbjct: 455 SLKFDAPLPSHMQLSFNLLKS 469

[Close]

BLAST of ClCG02G006340 vs. ExPASy Swiss-Prot
Match: Q0J4D4 (RNA pseudouridine synthase 3, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0520100 PE=2 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 1.7e-75
Identity = 164/428 (38.32%), Postives = 252/428 (58.88%), Query Frame = 0


Query: 115 TLPPYTTTVNGSVLGNRILNRGAQAEAEASTVSNTALKWVIRCCPELPRSLVQKLFRLRK 174
           +LPP+    +G  L  R           A+    TA+ WV     ++P+ +VQ  F  R 
Sbjct: 55  SLPPFPGGGDGDPLPGR---------KAAAPRRVTAVSWVKHYLADVPQEVVQAHFNKRL 114

Query: 175 VRRGSSTIENS-ECNLEAGDQLKRVAAKDILNVGDQIFLPISVQVFPREK-------ARG 234
           V    S  E S E        LK++   D++  G +I LP+SV     +K       A  
Sbjct: 115 VYSECSDHEVSVETIKSQKHHLKKIKHNDVMEPGMRIHLPVSVAEGEIKKRYETIPTATL 174

Query: 235 YCNKEEEKFIHSLVLYKDPAILVINKPPGLPVQGGIGVKRSLDELAASCLRYDYLEPPRL 294
           + NK+E +++  LV++KD AILV+NKPP +P++G + V  S+D LAA+ L Y   E P+L
Sbjct: 175 HPNKDEIEYLRRLVIHKDSAILVLNKPPKVPMKGNLPVHNSMDVLAAAALSYGNEEGPKL 234

Query: 295 VHRLDRDSSGILIMGRTSTSTSVLHSVFREKTFEASTHANRVDSEKKFLEKRYWALVIGS 354
           VHRLDR+SSG+L+ GRT  S + LH +F      A T++   ++  +   +RYWALVIG+
Sbjct: 235 VHRLDRESSGLLLFGRTKESFTRLHWLFTSVNL-AKTNSQVWNAACEAYMQRYWALVIGT 294

Query: 355 PRRSKGLITAPLGKIVLDDGRSEQIMVIDNAESMPFQQAITRYKVI-KSHHGYTWLELCP 414
           P+  +G+I+APL K++LDDG++E++++   +     Q+A+T Y+V+  + HG +W+EL P
Sbjct: 295 PKEREGIISAPLSKVLLDDGKAERVILAHPSGIDGAQEAVTAYRVMGPTIHGCSWIELRP 354

Query: 415 LTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRNLKAF-HSNFHKNQGKKQSL--PFGLDF 474
           LTGRKHQLRVHCAE LGTPIVGDYKYGW  H+  K     +F    G+   L  P GL+ 
Sbjct: 355 LTGRKHQLRVHCAEALGTPIVGDYKYGWFVHQRWKQNPQPDFEPFTGEPYKLRRPEGLEI 414

Query: 475 ESGSIAENNPRLHLHCKQLSLPDVSFALHNDSLGHD------CSRLECLELDAPLPSYMQ 525
           + GS+    P LHLHC+++ +P+++  L ++   H+        +   L   AP+P++M+
Sbjct: 415 QKGSVLSKVPLLHLHCREMVIPNIAKFLSSNGEWHENGAPWSKEKPNLLRFIAPMPAHMK 472

[Close]

BLAST of ClCG02G006340 vs. ExPASy Swiss-Prot
Match: Q69K07 (RNA pseudouridine synthase 4, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0103500 PE=2 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 1.9e-74
Identity = 161/362 (44.48%), Postives = 222/362 (61.33%), Query Frame = 0


Query: 104 QKNEKGSNRWFTLPPYTTTVNGSVLGNRILNRGAQAEAEASTVSNTALKWVIRCCPELPR 163
           +  E+G + W  LPP+      +    R ++RG   E        TA+KWV RCCP+LP 
Sbjct: 43  ETGERGKSPWLQLPPFAPL--DAAAAARAISRGG-GEGGDGEQGATAIKWVRRCCPDLPT 102

Query: 164 SLVQKLFRLRKVRRGSSTIENSECNLEAGD-QLKRVAAKDILNVGDQIFLPISV-QVFPR 223
           SLVQKLFRLRKV++   T E S  +  A   +L+RV+AKD L  GD +FLP+++ +    
Sbjct: 103 SLVQKLFRLRKVKKNVVTAEISSADASAEQHRLRRVSAKDQLMPGDILFLPVNLKESSVA 162

Query: 224 EKARGYCNKEEEKFIHSLVLYKDPAILVINKPPGLPVQGGIGVKRSLDELAASCLRYDYL 283
           EK + + N+ E  F+  L +YKD AI+V+NKPPG+PVQGG+G+K S+D L AS    +  
Sbjct: 163 EKTKKFDNRNEINFLRGLEIYKDEAIIVVNKPPGMPVQGGVGIKNSIDVL-ASMFEENSS 222

Query: 284 EPPRLVHRLDRDSSGILIMGRTSTSTSVLHSVFREKTFEASTHANRVDSEKKFLEKRYWA 343
           E PRLVHRLDRD SGIL++GR   STS+LH++FREKT +A       D  +  L+++Y A
Sbjct: 223 EAPRLVHRLDRDCSGILVLGRNQLSTSMLHAIFREKTADA-----LADGTQHVLQRKYVA 282

Query: 344 LVIGSPRRSKGLITAPLGKIVLDDGRSEQIMVIDNAESMPFQQAITRYKVIKS-HHGYTW 403
           LVIG+PR  KGL++APL KI+L DG+SE++ +  ++ +   Q A+T Y+VI+S   GYTW
Sbjct: 283 LVIGTPRHPKGLLSAPLAKILLQDGKSERLTIRASSNAASVQDALTEYRVIESCPQGYTW 342

Query: 404 LELCPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRN--LKAFHSNFHKNQGKKQSLPF 461
           LEL P TGRKHQ        L   ++G      +  R+  L   H    +N   K S P 
Sbjct: 343 LELFPRTGRKHQ------RFLEPQLLGITSMDGKRIRSGCLFPCHGQLMRNCSGKGSFPL 389

[Close]

BLAST of ClCG02G006340 vs. ExPASy Swiss-Prot
Match: Q5XET6 (RNA pseudouridine synthase 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g78910 PE=2 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 7.1e-74
Identity = 165/455 (36.26%), Postives = 253/455 (55.60%), Query Frame = 0


Query: 90  STLALSNTTENVSEQKNEKGSNRWFTLPPYTTTVNGSVLGNRILNRGAQAEAEASTVSNT 149
           S + ++N   ++   K      +  +LPP+     G  L  +  N GA  +   S    T
Sbjct: 29  SVIRVTNNVAHLGPPKQGPLPRQLISLPPFP----GHPLPGK--NAGADGDDGDSGGHVT 88

Query: 150 ALKWVIRCCPELPRSLVQKLFRLRKVRRGSSTIENSECNLEAGD-QLKRVAAKDILNVGD 209
           A+ WV     E+    +Q  F    V+       ++    E G   ++++   +++ +GD
Sbjct: 89  AISWVKYYFEEIYDKAIQTHFTKGLVQMEFRGRRDASREKEDGAIPMRKIKHNEVMQIGD 148

Query: 210 QIFLPISVQVFPREKARG-------YCNKEEEKFIHSLVLYKDPAILVINKPPGLPVQGG 269
           +I+LP+S+      K          Y N +E  ++  LV +KD AI+V+NKPP LPV+G 
Sbjct: 149 KIWLPVSIAEMRISKRYDTIPSGTLYPNADEIAYLQRLVRFKDSAIIVLNKPPKLPVKGN 208

Query: 270 IGVKRSLDELAASCLRYDYLEPPRLVHRLDRDSSGILIMGRTSTSTSVLHSVFRE-KTFE 329
           + +  S+D LAA+ L +   E PRLVHRLDR++SG+L+MGRT  S   LHSVF + K   
Sbjct: 209 VPIHNSMDALAAAALSFGNDEGPRLVHRLDRETSGLLVMGRTKESIDYLHSVFSDYKGRN 268

Query: 330 ASTHANRVDSEKKFLEKRYWALVIGSPRRSKGLITAPLGKIVLDDGRSEQIMVIDNAESM 389
           +S  A     E  +  ++YWALVIGSP+  +GLI+APL K++LDDG+++++++   +   
Sbjct: 269 SSCKAWNKACEAMY--QQYWALVIGSPKEKEGLISAPLSKVLLDDGKTDRVVLAQGSGFE 328

Query: 390 PFQQAITRYKVI-KSHHGYTWLELCPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRNL 449
             Q AIT YKV+    +G +W+EL P+T RKHQLRVHCAE LGTPIVGDYKYGW  H+  
Sbjct: 329 ASQDAITEYKVLGPKINGCSWVELRPITSRKHQLRVHCAEALGTPIVGDYKYGWFVHKRW 388

Query: 450 KAF-HSNFHKNQGKKQSL--PFGLDFESGSIAENNPRLHLHCKQLSLPDVSFALHNDSLG 509
           K     +     GK   L  P GLD + GS+    P LHLHC+++ LP+++  LH  +  
Sbjct: 389 KQMPQVDIEPTTGKPYKLRRPEGLDVQKGSVLSKVPLLHLHCREMVLPNIAKFLHVMNQQ 448

Query: 510 HD-------CSRLECLELDAPLPSYMQRSWDIINN 525
                      + + L   A +PS+M+ SW+++++
Sbjct: 449 ETEPLHTGIIDKPDLLRFVASMPSHMKISWNLMSS 475

[Close]

BLAST of ClCG02G006340 vs. ExPASy Swiss-Prot
Match: Q68XB2 (Ribosomal large subunit pseudouridine synthase C OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) OX=257363 GN=rluC PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 2.6e-28
Identity = 91/285 (31.93%), Postives = 149/285 (52.28%), Query Frame = 0


Query: 152 KWVIRCCPELPRSLVQKLFRLRKVRRGSSTIENSECNLEAGDQLKRVAAKDILNVGDQIF 211
           K++ R  P L + +++K  R ++V   +   + +E NL       RV   D + + D   
Sbjct: 15  KYLKRLYPSLTQGVIEKALRQKQV---TVNFQKAEANL-------RVKEGDTIFINDYFN 74

Query: 212 LPIS---VQVFPREKARGYCNKEEEKFIHSLVLYKDPAILVINKPPGLPVQGGIGVKRSL 271
           LP++     VF   +      K  +K +   ++Y+D  ++ INKP  L  QGG  +  S+
Sbjct: 75  LPVTQHETLVFADAEI-----KLAKKILTDYLIYEDDHLIAINKPASLATQGGSKINLSI 134

Query: 272 DELAASCLRYDYLEPPRLVHRLDRDSSGILIMGRTSTSTSVLHSVFREKTFEASTHANRV 331
           D  A   L Y   +  +LVHRLD+++SG+L++ +   S+  LH  F+E            
Sbjct: 135 DS-ALKYLNYQGAD-FKLVHRLDKETSGLLLIAKNYLSSVKLHDAFKE------------ 194

Query: 332 DSEKKFLEKRYWALVIGSPRRSKGLITAPLGKIVLDDGRSEQIMVIDNAESMPFQQAITR 391
               K + K+Y+A+  G P ++ G++ + +GK     GR  +I  ID+      + AIT 
Sbjct: 195 ----KLVIKKYFAITYGRPVKNVGIVKSNIGK---SKGRMFKITDIDSDNG---KLAITY 254

Query: 392 YKVIKSHHGYTWL-ELCPLTGRKHQLRVHCAEVLGTPIVGDYKYG 433
           YK++KS +   +L E  P+TGR HQLR+H A++LG PI+GD KYG
Sbjct: 255 YKLLKSLNNNLFLIEFMPVTGRMHQLRLH-AQLLGCPILGDDKYG 259

[Close]

BLAST of ClCG02G006340 vs. ExPASy TrEMBL
Match: A0A5D3C4F5 (RNA pseudouridine synthase 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00930 PE=4 SV=1)

HSP 1 Score: 833.6 bits (2152), Expect = 4.7e-238
Identity = 411/471 (87.26%), Postives = 425/471 (90.23%), Query Frame = 0


Query: 54  MVLRALLRRSVILRTSPSSAAPGGGSFHFSIFHELKSTLALSNTTENVSEQKNEKGSNRW 113
           MVL  L R SVILRTSPS   P     +FSIFH LKSTLALSN +E VS+QKNEKGSNRW
Sbjct: 1   MVLPPLFRPSVILRTSPSYTDPSSEILYFSIFHVLKSTLALSNASEPVSQQKNEKGSNRW 60

Query: 114 FTLPPYTTTVNGSVLGNRILNRGAQAEAEASTVSNTALKWVIRCCPELPRSLVQKLFRLR 173
           FTLPPYT TVN S+LGNRILNRGAQAE E ST + TALKWVI CCPELPRSLVQKLFRLR
Sbjct: 61  FTLPPYTATVNASILGNRILNRGAQAEVETSTAAITALKWVIHCCPELPRSLVQKLFRLR 120

Query: 174 KVRRGSSTIENSECNLEAGDQLKRVAAKDILNVGDQIFLPISVQVFPREKARGYCNKEEE 233
           KVRRGSS IENSE NLEA DQLKRVAAKDILNVGDQIFLPIS QVF  EK R YCNK+EE
Sbjct: 121 KVRRGSSMIENSEYNLEARDQLKRVAAKDILNVGDQIFLPISAQVFSTEKTRDYCNKDEE 180

Query: 234 KFIHSLVLYKDPAILVINKPPGLPVQGGIGVKRSLDELAASCLRYDYLEPPRLVHRLDRD 293
            F+HSLVLYKDPAILVINKPPGLPVQGGIGVKRSLDELAASCL Y Y EPPRLVHRLDRD
Sbjct: 181 TFMHSLVLYKDPAILVINKPPGLPVQGGIGVKRSLDELAASCLSYGYSEPPRLVHRLDRD 240

Query: 294 SSGILIMGRTSTSTSVLHSVFREKTFEASTHANRVDSEKKFLEKRYWALVIGSPRRSKGL 353
           SSGILIMGRTSTSTS+LHSVFREKTF+AS HAN VDSEKK L KRYWALVIGSPRRSKGL
Sbjct: 241 SSGILIMGRTSTSTSLLHSVFREKTFDASKHANHVDSEKKILLKRYWALVIGSPRRSKGL 300

Query: 354 ITAPLGKIVLDDGRSEQIMVIDNAESMPFQQAITRYKVIKSHHGYTWLELCPLTGRKHQL 413
           ITAPLGKIVLDDGRSE+IMVIDNAE MPFQQAITRYKVIKSHHGYTWLELCPLTGRKHQL
Sbjct: 301 ITAPLGKIVLDDGRSERIMVIDNAEPMPFQQAITRYKVIKSHHGYTWLELCPLTGRKHQL 360

Query: 414 RVHCAEVLGTPIVGDYKYGWQAHRNLKAFHSNFHKNQGKKQSLPFGLDFESGSIAENNPR 473
           RVHCAEVLGTPIVGDYKYGWQAH+N K FH NFHKNQGKKQ LPFGLDFESGSIAE NPR
Sbjct: 361 RVHCAEVLGTPIVGDYKYGWQAHKNWKPFHYNFHKNQGKKQFLPFGLDFESGSIAETNPR 420

Query: 474 LHLHCKQLSLPDVSFALHNDSLGHDCSRLECLELDAPLPSYMQRSWDIINN 525
           LHLHCKQL+LPDVSFALHNDSL  DCSRLECLELDAPLPSYMQ+SWDIIN+
Sbjct: 421 LHLHCKQLTLPDVSFALHNDSLDQDCSRLECLELDAPLPSYMQKSWDIINS 471

[Close]

BLAST of ClCG02G006340 vs. ExPASy TrEMBL
Match: A0A1S3BZE7 (RNA pseudouridine synthase 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103495275 PE=4 SV=1)

HSP 1 Score: 833.6 bits (2152), Expect = 4.7e-238
Identity = 411/471 (87.26%), Postives = 425/471 (90.23%), Query Frame = 0


Query: 54  MVLRALLRRSVILRTSPSSAAPGGGSFHFSIFHELKSTLALSNTTENVSEQKNEKGSNRW 113
           MVL  L R SVILRTSPS   P     +FSIFH LKSTLALSN +E VS+QKNEKGSNRW
Sbjct: 1   MVLPPLFRPSVILRTSPSYTDPSSEILYFSIFHVLKSTLALSNASEPVSQQKNEKGSNRW 60

Query: 114 FTLPPYTTTVNGSVLGNRILNRGAQAEAEASTVSNTALKWVIRCCPELPRSLVQKLFRLR 173
           FTLPPYT TVN S+LGNRILNRGAQAE E ST + TALKWVI CCPELPRSLVQKLFRLR
Sbjct: 61  FTLPPYTATVNASILGNRILNRGAQAEVETSTAAITALKWVIHCCPELPRSLVQKLFRLR 120

Query: 174 KVRRGSSTIENSECNLEAGDQLKRVAAKDILNVGDQIFLPISVQVFPREKARGYCNKEEE 233
           KVRRGSS IENSE NLEA DQLKRVAAKDILNVGDQIFLPIS QVF  EK R YCNK+EE
Sbjct: 121 KVRRGSSMIENSEYNLEARDQLKRVAAKDILNVGDQIFLPISAQVFSTEKTRDYCNKDEE 180

Query: 234 KFIHSLVLYKDPAILVINKPPGLPVQGGIGVKRSLDELAASCLRYDYLEPPRLVHRLDRD 293
            F+HSLVLYKDPAILVINKPPGLPVQGGIGVKRSLDELAASCL Y Y EPPRLVHRLDRD
Sbjct: 181 TFMHSLVLYKDPAILVINKPPGLPVQGGIGVKRSLDELAASCLSYGYSEPPRLVHRLDRD 240

Query: 294 SSGILIMGRTSTSTSVLHSVFREKTFEASTHANRVDSEKKFLEKRYWALVIGSPRRSKGL 353
           SSGILIMGRTSTSTS+LHSVFREKTF+AS HAN VDSEKK L KRYWALVIGSPRRSKGL
Sbjct: 241 SSGILIMGRTSTSTSLLHSVFREKTFDASKHANHVDSEKKILLKRYWALVIGSPRRSKGL 300

Query: 354 ITAPLGKIVLDDGRSEQIMVIDNAESMPFQQAITRYKVIKSHHGYTWLELCPLTGRKHQL 413
           ITAPLGKIVLDDGRSE+IMVIDNAE MPFQQAITRYKVIKSHHGYTWLELCPLTGRKHQL
Sbjct: 301 ITAPLGKIVLDDGRSERIMVIDNAEPMPFQQAITRYKVIKSHHGYTWLELCPLTGRKHQL 360

Query: 414 RVHCAEVLGTPIVGDYKYGWQAHRNLKAFHSNFHKNQGKKQSLPFGLDFESGSIAENNPR 473
           RVHCAEVLGTPIVGDYKYGWQAH+N K FH NFHKNQGKKQ LPFGLDFESGSIAE NPR
Sbjct: 361 RVHCAEVLGTPIVGDYKYGWQAHKNWKPFHYNFHKNQGKKQFLPFGLDFESGSIAETNPR 420

Query: 474 LHLHCKQLSLPDVSFALHNDSLGHDCSRLECLELDAPLPSYMQRSWDIINN 525
           LHLHCKQL+LPDVSFALHNDSL  DCSRLECLELDAPLPSYMQ+SWDIIN+
Sbjct: 421 LHLHCKQLTLPDVSFALHNDSLDQDCSRLECLELDAPLPSYMQKSWDIINS 471

[Close]

BLAST of ClCG02G006340 vs. ExPASy TrEMBL
Match: A0A6J1GMP9 (RNA pseudouridine synthase 4, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111455375 PE=4 SV=1)

HSP 1 Score: 825.1 bits (2130), Expect = 1.7e-235
Identity = 408/471 (86.62%), Postives = 425/471 (90.23%), Query Frame = 0


Query: 54  MVLRALLRRSVILRTSPSSAAPGGGSFHFSIFHELKSTLALSNTTENVSEQKNEKGSNRW 113
           MVL A+LRRSVI R+ PSSAAPGG S HFSIF E KST ALS  TE VSEQKNEKGSNRW
Sbjct: 1   MVLPAVLRRSVIRRSFPSSAAPGGESLHFSIFCERKSTYALSIATETVSEQKNEKGSNRW 60

Query: 114 FTLPPYTTTVNGSVLGNRILNRGAQAEAEASTVSNTALKWVIRCCPELPRSLVQKLFRLR 173
           FTLPP+T T NGS LGNRI+N GAQAEAE ST + TALKWV RCCPELPRSLVQKLFRLR
Sbjct: 61  FTLPPFTATANGSALGNRIMNGGAQAEAETSTTAITALKWVFRCCPELPRSLVQKLFRLR 120

Query: 174 KVRRGSSTIENSECNLEAGDQLKRVAAKDILNVGDQIFLPISVQVFPREKARGYCNKEEE 233
           KVRRGSS IENSECNLEA DQLKRVAA DILN+GD++ LPISVQVFP E+A   CNKEE+
Sbjct: 121 KVRRGSSMIENSECNLEARDQLKRVAANDILNIGDKLCLPISVQVFPTERAPDCCNKEEK 180

Query: 234 KFIHSLVLYKDPAILVINKPPGLPVQGGIGVKRSLDELAASCLRYDYLEPPRLVHRLDRD 293
           KFIHSLVLYKDPAIL INKPPGLPVQGGIGVKRSLD+LAASCL YDY EPPRLVHRLDRD
Sbjct: 181 KFIHSLVLYKDPAILAINKPPGLPVQGGIGVKRSLDQLAASCLSYDYSEPPRLVHRLDRD 240

Query: 294 SSGILIMGRTSTSTSVLHSVFREKTFEASTHANRVDSEKKFLEKRYWALVIGSPRRSKGL 353
           SSGILIMGRTSTSTSVLHS+FREKT  AS HAN VDSEKK L+KRYWALVIGSPRR+KGL
Sbjct: 241 SSGILIMGRTSTSTSVLHSIFREKTLGASKHANHVDSEKKILQKRYWALVIGSPRRTKGL 300

Query: 354 ITAPLGKIVLDDGRSEQIMVIDNAESMPFQQAITRYKVIKSHHGYTWLELCPLTGRKHQL 413
           ITAPL K+VLDDGRSEQIMVIDNAESMPFQ AIT YKVIKSHHGYTWLELCPLTGRKHQL
Sbjct: 301 ITAPLVKMVLDDGRSEQIMVIDNAESMPFQHAITTYKVIKSHHGYTWLELCPLTGRKHQL 360

Query: 414 RVHCAEVLGTPIVGDYKYGWQAHRNLKAFHSNFHKNQGKKQSLPFGLDFESGSIAENNPR 473
           RVHCAEVLGTPIVGDYKYGWQAHRN K F  N HKNQGKKQSLPFGLDFESGSIAEN+PR
Sbjct: 361 RVHCAEVLGTPIVGDYKYGWQAHRNWKPFPHNSHKNQGKKQSLPFGLDFESGSIAENSPR 420

Query: 474 LHLHCKQLSLPDVSFALHNDSLGHDCSRLECLELDAPLPSYMQRSWDIINN 525
           LHLHCKQL+LPDVS ALHNDSL HDCSRLE LELDAPLPSYMQRSWDIINN
Sbjct: 421 LHLHCKQLTLPDVSCALHNDSLDHDCSRLERLELDAPLPSYMQRSWDIINN 471

[Close]

BLAST of ClCG02G006340 vs. ExPASy TrEMBL
Match: A0A6J1IBC5 (RNA pseudouridine synthase 4, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111470950 PE=4 SV=1)

HSP 1 Score: 817.8 bits (2111), Expect = 2.7e-233
Identity = 405/472 (85.81%), Postives = 422/472 (89.41%), Query Frame = 0


Query: 54  MVLRALLRRSVILRTSPSSAAPGGGSFHFSIFHELKSTLALSNTTENVSEQKNEKGSNRW 113
           MVL ALLRRSVI R+ PSSAAPGG S HFSIF E KST ALSN TE VSEQKNEKGSNRW
Sbjct: 1   MVLPALLRRSVIRRSFPSSAAPGGESLHFSIFCERKSTFALSNATETVSEQKNEKGSNRW 60

Query: 114 FTLPPYTTTVNGSVLGNRILNRGAQAEAEASTVSNTALKWVIRCCPELPRSLVQKLFRLR 173
           FTLPP+T TVNGS LGNRI+N GAQ+EAE ST + TALKWV RCCPELPRSLVQKLFRLR
Sbjct: 61  FTLPPFTATVNGSALGNRIMNGGAQSEAETSTTAITALKWVFRCCPELPRSLVQKLFRLR 120

Query: 174 KVRRGSSTIENSECNLEAGDQLKRVAAKDILNVGDQIFLPISVQVFPREKARGYCNKEEE 233
           KVRRGSS IENSECNLEA DQLKRVAA DILN+GD++ LPISVQVFP E+A   CNKEE+
Sbjct: 121 KVRRGSSMIENSECNLEARDQLKRVAANDILNIGDKLCLPISVQVFPTERAPDCCNKEEK 180

Query: 234 KFIHSLVLYKDPAILVINKPPGLPVQGGIGVKRSLDELAASCLRYDYLEPPRLVHRLDRD 293
           KFIHSLVLYKDPAIL INKPPGLPVQGGIGVKRSLDELAASCL YDY EPPRLVHRLDRD
Sbjct: 181 KFIHSLVLYKDPAILAINKPPGLPVQGGIGVKRSLDELAASCLSYDYSEPPRLVHRLDRD 240

Query: 294 SSGILIMGRTSTSTSVLHSVFREKTFEASTHANRVDSEKKFLEKRYWALVIGSPRRSKGL 353
           SSGILIMGRTSTSTSVLHS+FREKT  AS HAN VD EK  L+KRYWALVIGSP  +KGL
Sbjct: 241 SSGILIMGRTSTSTSVLHSIFREKTLGASKHANHVDREKMILQKRYWALVIGSPSHTKGL 300

Query: 354 ITAPLGKIVLDDGRSEQIMVIDNAES-MPFQQAITRYKVIKSHHGYTWLELCPLTGRKHQ 413
           ITAPL K+VLDDGRSEQIMV+DNAES MPFQ AIT YKVIKSHHGYTW+ELCPLTGRKHQ
Sbjct: 301 ITAPLVKMVLDDGRSEQIMVVDNAESIMPFQHAITTYKVIKSHHGYTWVELCPLTGRKHQ 360

Query: 414 LRVHCAEVLGTPIVGDYKYGWQAHRNLKAFHSNFHKNQGKKQSLPFGLDFESGSIAENNP 473
           LRVHCAE LGTPIVGDYKYGWQAHRNLK F  N HKNQGKKQSLPFGLDFESGSIAENNP
Sbjct: 361 LRVHCAEALGTPIVGDYKYGWQAHRNLKPFPHNSHKNQGKKQSLPFGLDFESGSIAENNP 420

Query: 474 RLHLHCKQLSLPDVSFALHNDSLGHDCSRLECLELDAPLPSYMQRSWDIINN 525
           RLHLHCK L+LPDVS ALHNDSL HDCSRLE LELDAPLPSYMQRSWDIINN
Sbjct: 421 RLHLHCKHLTLPDVSCALHNDSLDHDCSRLERLELDAPLPSYMQRSWDIINN 472

[Close]

BLAST of ClCG02G006340 vs. ExPASy TrEMBL
Match: A0A6J1D432 (RNA pseudouridine synthase 4, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111017405 PE=4 SV=1)

HSP 1 Score: 816.6 bits (2108), Expect = 5.9e-233
Identity = 400/472 (84.75%), Postives = 432/472 (91.53%), Query Frame = 0


Query: 54  MVLRALLRRSVILRTSPSSAAPGGGSFHFSIFHELKSTLALSNTTENVSEQKNE-KGSNR 113
           M+L ALLRRS+IL  +PSS A GG S HFS+FHELKST ALSNT+E +SE+KNE KG NR
Sbjct: 1   MLLPALLRRSLILSGTPSSTARGGHSLHFSVFHELKSTFALSNTSETISEEKNEKKGFNR 60

Query: 114 WFTLPPYTTTVNGSVLGNRILNRGAQAEAEASTVSNTALKWVIRCCPELPRSLVQKLFRL 173
           WFTLPPYT TV+GSVLGNRILN+G+QAE E ST + TALKWV+RCCPELPRSLVQKLFRL
Sbjct: 61  WFTLPPYTATVDGSVLGNRILNQGSQAEDETSTTAITALKWVLRCCPELPRSLVQKLFRL 120

Query: 174 RKVRRGSSTIENSECNLEAGDQLKRVAAKDILNVGDQIFLPISVQVFPREKARGYCNKEE 233
           RK+RRGSS IE+SECNLEA +QLKRVAAKDILNVGDQIFLPISVQVFPRE+AR YCNKEE
Sbjct: 121 RKIRRGSSMIESSECNLEAQNQLKRVAAKDILNVGDQIFLPISVQVFPRERARDYCNKEE 180

Query: 234 EKFIHSLVLYKDPAILVINKPPGLPVQGGIGVKRSLDELAASCLRYDYLEPPRLVHRLDR 293
           EKF+HSLVLYKDPAI+VINKPPGLPVQGGIG+ RSLDELAASCL YDY EPPRLVHRLDR
Sbjct: 181 EKFMHSLVLYKDPAIIVINKPPGLPVQGGIGITRSLDELAASCLSYDYSEPPRLVHRLDR 240

Query: 294 DSSGILIMGRTSTSTSVLHSVFREKTFEASTHANRVDSEKKFLEKRYWALVIGSPRRSKG 353
           DSSGIL+MGRTSTSTSVLHS+FREKTF AS H   VDSEKK L+K+YWALVIGSPRR  G
Sbjct: 241 DSSGILVMGRTSTSTSVLHSIFREKTFGASKH--HVDSEKKILQKKYWALVIGSPRRPNG 300

Query: 354 LITAPLGKIVLDDGRSEQIMVIDNAESMPFQQAITRYKVIKSHHGYTWLELCPLTGRKHQ 413
           LITAPLGKIVLDDGRSE+IMVIDNAESM FQQAIT Y+VIKSHHGYTWLELCPLTGRKHQ
Sbjct: 301 LITAPLGKIVLDDGRSEKIMVIDNAESMAFQQAITTYRVIKSHHGYTWLELCPLTGRKHQ 360

Query: 414 LRVHCAEVLGTPIVGDYKYGWQAHRNLKAFHSNFHKNQGKKQSLPFGLDFESGSIAENNP 473
           LRVHCAEVLGTPIVGDYKYGWQAHRN + F SNFHKNQGKKQSLPFGLDFE+GS+AEN+P
Sbjct: 361 LRVHCAEVLGTPIVGDYKYGWQAHRNWEPFPSNFHKNQGKKQSLPFGLDFENGSVAENSP 420

Query: 474 RLHLHCKQLSLPDVSFALHNDSLGHDCSRLECLELDAPLPSYMQRSWDIINN 525
           RLHLHCKQL+LP+VS AL NDSL HD S LECLELDAPLPSYM+RSWDIINN
Sbjct: 421 RLHLHCKQLALPNVSGALPNDSLDHDFSELECLELDAPLPSYMRRSWDIINN 470

[Close]

BLAST of ClCG02G006340 vs. TAIR 10
Match: AT3G19440.1 (Pseudouridine synthase family protein )

HSP 1 Score: 458.8 bits (1179), Expect = 6.0e-129
Identity = 235/441 (53.29%), Postives = 309/441 (70.07%), Query Frame = 0


Query: 93  ALSNTTENVSEQKNEKGSNRWFTLPPYTTTVNGSVLGNRILNRGAQAEAEASTVSNTALK 152
           A   +T + S  + +    +W TLPP++ T++G+ +G  +L+ G   ++       TAL+
Sbjct: 35  AAHQSTRSYSTTQTDDSRGKWLTLPPFSPTIDGTAVGKDLLSDGDSVKSSTDNSKTTALR 94

Query: 153 WVIRCCPELPRSLVQKLFRLRKVRRG-SSTIENSECNLEAGDQLKRVAAKDILNVGDQIF 212
           W++RC P+LPR+LVQKLFRLR+VRR  S +++  E       QLKRVAAK+ LNVGD+I+
Sbjct: 95  WILRCRPDLPRTLVQKLFRLRQVRREMSMSVDGDELQ---RSQLKRVAAKESLNVGDRIY 154

Query: 213 LPISV-----QVFPREKARGYCNKEEEKFIHSLVLYKDPAILVINKPPGLPVQGGIGVKR 272
           LP+SV     Q  P +K    C+ EE KF+ SLVLYKDPAI+V+NKP GL VQGG G+K 
Sbjct: 155 LPLSVDNDTPQTPPAKKESFQCSDEERKFVCSLVLYKDPAIIVLNKPHGLAVQGGSGIKT 214

Query: 273 SLDELAASCLRYDYLEPPRLVHRLDRDSSGILIMGRTSTSTSVLHSVFREKTFEASTHAN 332
           S+DELAASCL++D  E PRLVHRLDRD SG+L++ RT T+ +VLHS+FREKT  AS +  
Sbjct: 215 SIDELAASCLKFDKSESPRLVHRLDRDCSGLLVLARTQTAATVLHSIFREKTTGASAYG- 274

Query: 333 RVDSEKKFLEKRYWALVIGSPRRSKGLITAPLGKIVLDDGRSEQIMVIDNAESMPFQQAI 392
            V    K L+++Y ALVIG P R +G I+APL K+V+DDG+SE+I V DN E +  Q AI
Sbjct: 275 -VKKNVKSLKRKYMALVIGCPPRQRGQISAPLRKVVVDDGKSERITVNDNGELVSTQHAI 334

Query: 393 TRYKVIKSH-HGYTWLELCPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRNLKAFHSN 452
           T Y+VI+S  HGYTWLEL PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAH+  + F S+
Sbjct: 335 TEYRVIESSPHGYTWLELRPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKAREPFVSS 394

Query: 453 FHKNQGKKQSLPFGLDFESGSIAENNPRLHLHCKQLSLPDVSFALH--NDSLGHDCSRLE 512
              N  K+ S PFGLD + G ++   P LHLH KQ+ LP++S  L     S   D S L+
Sbjct: 395 -ENNPTKQSSSPFGLDLDGGDVSSKQPHLHLHSKQIDLPNISQLLEKMQVSSDSDISDLD 454

Query: 513 CLELDAPLPSYMQRSWDIINN 525
            L+ DAPLPS+MQ S++++ +
Sbjct: 455 SLKFDAPLPSHMQLSFNLLKS 469

[Close]

BLAST of ClCG02G006340 vs. TAIR 10
Match: AT1G78910.1 (Pseudouridine synthase family protein )

HSP 1 Score: 279.6 bits (714), Expect = 5.0e-75
Identity = 165/455 (36.26%), Postives = 253/455 (55.60%), Query Frame = 0


Query: 90  STLALSNTTENVSEQKNEKGSNRWFTLPPYTTTVNGSVLGNRILNRGAQAEAEASTVSNT 149
           S + ++N   ++   K      +  +LPP+     G  L  +  N GA  +   S    T
Sbjct: 29  SVIRVTNNVAHLGPPKQGPLPRQLISLPPFP----GHPLPGK--NAGADGDDGDSGGHVT 88

Query: 150 ALKWVIRCCPELPRSLVQKLFRLRKVRRGSSTIENSECNLEAGD-QLKRVAAKDILNVGD 209
           A+ WV     E+    +Q  F    V+       ++    E G   ++++   +++ +GD
Sbjct: 89  AISWVKYYFEEIYDKAIQTHFTKGLVQMEFRGRRDASREKEDGAIPMRKIKHNEVMQIGD 148

Query: 210 QIFLPISVQVFPREKARG-------YCNKEEEKFIHSLVLYKDPAILVINKPPGLPVQGG 269
           +I+LP+S+      K          Y N +E  ++  LV +KD AI+V+NKPP LPV+G 
Sbjct: 149 KIWLPVSIAEMRISKRYDTIPSGTLYPNADEIAYLQRLVRFKDSAIIVLNKPPKLPVKGN 208

Query: 270 IGVKRSLDELAASCLRYDYLEPPRLVHRLDRDSSGILIMGRTSTSTSVLHSVFRE-KTFE 329
           + +  S+D LAA+ L +   E PRLVHRLDR++SG+L+MGRT  S   LHSVF + K   
Sbjct: 209 VPIHNSMDALAAAALSFGNDEGPRLVHRLDRETSGLLVMGRTKESIDYLHSVFSDYKGRN 268

Query: 330 ASTHANRVDSEKKFLEKRYWALVIGSPRRSKGLITAPLGKIVLDDGRSEQIMVIDNAESM 389
           +S  A     E  +  ++YWALVIGSP+  +GLI+APL K++LDDG+++++++   +   
Sbjct: 269 SSCKAWNKACEAMY--QQYWALVIGSPKEKEGLISAPLSKVLLDDGKTDRVVLAQGSGFE 328

Query: 390 PFQQAITRYKVI-KSHHGYTWLELCPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRNL 449
             Q AIT YKV+    +G +W+EL P+T RKHQLRVHCAE LGTPIVGDYKYGW  H+  
Sbjct: 329 ASQDAITEYKVLGPKINGCSWVELRPITSRKHQLRVHCAEALGTPIVGDYKYGWFVHKRW 388

Query: 450 KAF-HSNFHKNQGKKQSL--PFGLDFESGSIAENNPRLHLHCKQLSLPDVSFALHNDSLG 509
           K     +     GK   L  P GLD + GS+    P LHLHC+++ LP+++  LH  +  
Sbjct: 389 KQMPQVDIEPTTGKPYKLRRPEGLDVQKGSVLSKVPLLHLHCREMVLPNIAKFLHVMNQQ 448

Query: 510 HD-------CSRLECLELDAPLPSYMQRSWDIINN 525
                      + + L   A +PS+M+ SW+++++
Sbjct: 449 ETEPLHTGIIDKPDLLRFVASMPSHMKISWNLMSS 475

[Close]

BLAST of ClCG02G006340 vs. TAIR 10
Match: AT1G76050.2 (Pseudouridine synthase family protein )

HSP 1 Score: 71.2 bits (173), Expect = 2.7e-12
Identity = 79/341 (23.17%), Postives = 131/341 (38.42%), Query Frame = 0


Query: 131 RILNRGAQAE--AEASTVSNTALKWVIRCCPELPRSLVQKLFRLRKVRRGSSTIENSECN 190
           R+ N G + E   +A+        W+      + R+ VQ   RL  V      ++    N
Sbjct: 63  RVNNAGLRIEEIVDAAKGKIRLDSWISSRINGVSRARVQSSIRLGLVTVNGRVVDKVSHN 122

Query: 191 LEAGDQLKRVAAKDILNVGDQIFLPISVQVFPREKARGYCNKEEEKFIHSLVLYKDPAIL 250
           +++GD++    ++           P+               K E + I   ++Y+D  +L
Sbjct: 123 VKSGDEVNCTISE---------LQPL---------------KAEAEDIPLDIVYEDKHVL 182

Query: 251 VINKP--------PGLPVQGGIGVKRSLDELAASCLRYDYLEP----------------- 310
           V+NKP        PG P   G  V   L   +  C+ Y   E                  
Sbjct: 183 VVNKPAHMVVHPAPGNPT--GTLVNGILHHCSLPCVDYSNSEEDDDSDEETFSDDEEMTT 242

Query: 311 ----------PRLVHRLDRDSSGILIMGRTSTSTSVLHSVFREKTFEASTHANRVDSEKK 370
                     P +VHRLD+ ++G+L++ +   S + L   F+  T               
Sbjct: 243 SPSSYAASVRPGIVHRLDKGTTGLLVVAKDEHSHAHLAEQFKLHT--------------- 302

Query: 371 FLEKRYWALVIGSPRRSKGLITAPLGKIVLDDGRSEQIMVIDNAESMPFQQAITRYKVIK 430
            +E+ Y +L  G P   +G I  P+G+      R     +         + A +RYKVI+
Sbjct: 303 -IERVYVSLTTGVPSPPQGRIEIPIGRD--SSNRIRMAAIPGGVRGGRARHAASRYKVIE 358

Query: 431 SH--HGYTWLELCPLTGRKHQLRVHCAEVLGTPIVGDYKYG 433
           +    G   +E    TGR HQ+R H A+ +G P++GD  YG
Sbjct: 363 TFAGGGSALVEWRLETGRTHQIRAH-AKYMGVPLLGDEVYG 358

[Close]

BLAST of ClCG02G006340 vs. TAIR 10
Match: AT3G52260.2 (Pseudouridine synthase family protein )

HSP 1 Score: 66.2 bits (160), Expect = 8.7e-11
Identity = 58/201 (28.86%), Postives = 95/201 (47.26%), Query Frame = 0


Query: 240 VLYKDPAILVINKPPGLPV-QGGIGVKRSLDELAASCL--RYDYL-----EPPRLVHRLD 299
           VLY+D  ++ +NKP GL V  GG+  +R++      C      Y+       P  VHRL 
Sbjct: 99  VLYEDDDLIALNKPSGLQVLPGGLFQQRTVLTQLQWCFGKNDSYIGSRESPHPVPVHRLG 158

Query: 300 RDSSGILIMGRTSTSTSVLHSVFREKT-FEASTHANRVDSEKKFLEKRYWALVIGSPRRS 359
           R +SGIL+  +T  + + L + F E T    S + ++     + L K Y AL  G     
Sbjct: 159 RGTSGILLCAKTKLAKTKLAAYFAEGTSLVGSGNLDQECGTGRKLSKIYRALADGIVEED 218

Query: 360 KGLITAPLGKIVLDDGRSEQIMVIDNAESMPFQQAITRYKVIKSHHGYTWLELCPLTGRK 419
           + +I  P+G +V   G ++ + V        F +     +  + +     +E+   +GR 
Sbjct: 219 EVVIKQPIG-VVRYPGVAQGLYVASPEGKPAFSKVFVLERDREKNCSLVKVEI--QSGRP 278

Query: 420 HQLRVHCAEVLGTPIVGDYKY 432
           HQ+R+H A  +G P+VGD  Y
Sbjct: 279 HQIRIHLA-YMGHPLVGDPLY 295

[Close]

BLAST of ClCG02G006340 vs. TAIR 10
Match: AT3G52260.3 (Pseudouridine synthase family protein )

HSP 1 Score: 60.8 bits (146), Expect = 3.7e-09
Identity = 55/196 (28.06%), Postives = 92/196 (46.94%), Query Frame = 0


Query: 240 VLYKDPAILVINKPPGLPV-QGGIGVKRSLDELAASCL--RYDYL-----EPPRLVHRLD 299
           VLY+D  ++ +NKP GL V  GG+  +R++      C      Y+       P  VHRL 
Sbjct: 129 VLYEDDDLIALNKPSGLQVLPGGLFQQRTVLTQLQWCFGKNDSYIGSRESPHPVPVHRLG 188

Query: 300 RDSSGILIMGRTSTSTSVLHSVFREKT-FEASTHANRVDSEKKFLEKRYWALVIGSPRRS 359
           R +SGIL+  +T  + + L + F E T    S + ++     + L K Y AL  G     
Sbjct: 189 RGTSGILLCAKTKLAKTKLAAYFAEGTSLVGSGNLDQECGTGRKLSKIYRALADGIVEED 248

Query: 360 KGLITAPLGKIVLDDGRSEQIMVIDNAESMPFQQAITRYKVIKSHHGYTWLELCPLTGRK 419
           + +I  P+G +V   G ++ + V        F +     +  + +     +E+   +GR 
Sbjct: 249 EVVIKQPIG-VVRYPGVAQGLYVASPEGKPAFSKVFVLERDREKNCSLVKVEI--QSGRP 308

Query: 420 HQLRVHCAEVLGTPIV 427
           HQ+R+H A  +G P+V
Sbjct: 309 HQIRIHLA-YMGHPLV 320

The following BLAST results are available for this feature:

BLAST of ClCG02G006340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888757.1	6.0e-248	90.64	RNA pseudouridine synthase 4, mitochondrial [Benincasa hispida]	[more]
XP_011658889.1	8.7e-239	87.90	RNA pseudouridine synthase 4, mitochondrial [Cucumis sativus] >KGN43951.2 hypoth...	[more]
XP_008454996.1	9.7e-238	87.26	PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Cucumis melo] >KAA003133...	[more]
XP_023553811.1	4.1e-236	86.62	RNA pseudouridine synthase 4, mitochondrial [Cucurbita pepo subsp. pepo]	[more]
KAG7011636.1	2.6e-235	86.41	RNA pseudouridine synthase 4, mitochondrial, partial [Cucurbita argyrosperma sub...	[more]

BLAST of ClCG02G006340 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LT72	8.5e-128	53.29	RNA pseudouridine synthase 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=A...	[more]
Q0J4D4	1.7e-75	38.32	RNA pseudouridine synthase 3, mitochondrial OS=Oryza sativa subsp. japonica OX=3...	[more]
Q69K07	1.9e-74	44.48	RNA pseudouridine synthase 4, mitochondrial OS=Oryza sativa subsp. japonica OX=3...	[more]
Q5XET6	7.1e-74	36.26	RNA pseudouridine synthase 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=A...	[more]
Q68XB2	2.6e-28	31.93	Ribosomal large subunit pseudouridine synthase C OS=Rickettsia typhi (strain ATC...	[more]

BLAST of ClCG02G006340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C4F5	4.7e-238	87.26	RNA pseudouridine synthase 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3BZE7	4.7e-238	87.26	RNA pseudouridine synthase 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103495...	[more]
A0A6J1GMP9	1.7e-235	86.62	RNA pseudouridine synthase 4, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1IBC5	2.7e-233	85.81	RNA pseudouridine synthase 4, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1D432	5.9e-233	84.75	RNA pseudouridine synthase 4, mitochondrial OS=Momordica charantia OX=3673 GN=LO...	[more]

BLAST of ClCG02G006340 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G19440.1	6.0e-129	53.29	Pseudouridine synthase family protein	[more]
AT1G78910.1	5.0e-75	36.26	Pseudouridine synthase family protein	[more]
AT1G76050.2	2.7e-12	23.17	Pseudouridine synthase family protein	[more]
AT3G52260.2	8.7e-11	28.86	Pseudouridine synthase family protein	[more]
AT3G52260.3	3.7e-09	28.06	Pseudouridine synthase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.2350.10	Pseudouridine synthase	coord: 228..490 e-value: 6.8E-54 score: 184.7
None	No IPR available	PANTHER	PTHR21600:SF53	RNA PSEUDOURIDINE SYNTHASE 3, MITOCHONDRIAL	coord: 92..522
None	No IPR available	PANTHER	PTHR21600	MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE	coord: 92..522
IPR006145	Pseudouridine synthase, RsuA/RluA-like	PFAM	PF00849	PseudoU_synth_2	coord: 247..418 e-value: 1.8E-26 score: 93.2
IPR006145	Pseudouridine synthase, RsuA/RluA-like	CDD	cd02869	PseudoU_synth_RluA_like	coord: 247..483 e-value: 1.1047E-52 score: 175.218
IPR020103	Pseudouridine synthase, catalytic domain superfamily	SUPERFAMILY	55120	Pseudouridine synthase	coord: 235..521

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G006340.2	ClCG02G006340.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000455	enzyme-directed rRNA pseudouridine synthesis
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0009451	RNA modification
molecular_function	GO:0016798	hydrolase activity, acting on glycosyl bonds
molecular_function	GO:0009982	pseudouridine synthase activity
molecular_function	GO:0003723	RNA binding