Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTCATTACTACAGTTGGTTGACAGTGGGTGGAGCGCTGATAATGGTACGTTCAAGCCTAGCTATCTACAACAACTCCAACGTCTGCTGCATGAGAAAGTTCCTAATTGTGGCATAGGGGTAGCCACAATAGAGTGTAGAGTTAGATTTTTAAAGTGATAGTATACAGCGATTGCTAAGATGTTGAGTAATGCATGCAACGGATTTAGTTGGAACGAGGACTTTAAGTGTGTAGACGCTGAGCAGGACATGTTTAGTCTATAGGTCTGGGTAAGACCACTTTATAATATACTATGACAATTGATATAATTTTTACTAACATATTATATCCATTTGTAGTCACATCCCAATGTGAAAGGTATGAGGCACAAACCACTCCCACACTATGATGATCTTTCCATCGTGTTTGGAAGGGATAAGGCTATTGGTGATAGCTGTCAAACCCCTCTTGATCAAGCATATGAGACAAATGACCATGTAGGGGATGTTAGGTTGGGATCACAGGATAATTAG
mRNA sequence
ATGGAGTCATTACTACAGTTGGTTGACAGTGGGTGGAGCGCTGATAATGGTACGTTCAAGCCTAGCTATCTACAACAACTCCAACGTCTGCTGCATGAGAAAGTTCCTAATTGTGGCATAGGGTCACATCCCAATGTGAAAGGTATGAGGCACAAACCACTCCCACACTATGATGATCTTTCCATCGTGTTTGGAAGGGATAAGGCTATTGGTGATAGCTGTCAAACCCCTCTTGATCAAGCATATGAGACAAATGACCATGTAGGGGATGTTAGGTTGGGATCACAGGATAATTAG
Coding sequence (CDS)
ATGGAGTCATTACTACAGTTGGTTGACAGTGGGTGGAGCGCTGATAATGGTACGTTCAAGCCTAGCTATCTACAACAACTCCAACGTCTGCTGCATGAGAAAGTTCCTAATTGTGGCATAGGGTCACATCCCAATGTGAAAGGTATGAGGCACAAACCACTCCCACACTATGATGATCTTTCCATCGTGTTTGGAAGGGATAAGGCTATTGGTGATAGCTGTCAAACCCCTCTTGATCAAGCATATGAGACAAATGACCATGTAGGGGATGTTAGGTTGGGATCACAGGATAATTAG
Protein sequence
MESLLQLVDSGWSADNGTFKPSYLQQLQRLLHEKVPNCGIGSHPNVKGMRHKPLPHYDDLSIVFGRDKAIGDSCQTPLDQAYETNDHVGDVRLGSQDN
Homology
BLAST of ClCG01G013815 vs. NCBI nr
Match:
XP_038889264.1 (uncharacterized protein At2g29880-like [Benincasa hispida])
HSP 1 Score: 116.7 bits (291), Expect = 1.1e-22
Identity = 62/148 (41.89%), Postives = 77/148 (52.03%), Query Frame = 0
Query: 1 MESLLQLVDSGWSADNGTFKPSYLQQLQRLLHEKVPNCGI-------------------- 60
+ESLLQLV++GW AD TFKP YLQQLQ L EK+P+C I
Sbjct: 21 VESLLQLVETGWQADKETFKPGYLQQLQCLFTEKIPSCSIRLSTIECKVRFLKRQYCAIV 80
Query: 61 ------------------------------GSHPNVKGMRHKPLPHYDDLSIVFGRDKAI 99
SHPNVKG+RHKP PH D+LSIVFG+D+A
Sbjct: 81 EMLSNACNGFGWNDEFKCVQVEKEVFDVWVWSHPNVKGLRHKPFPHCDELSIVFGKDRAT 140
BLAST of ClCG01G013815 vs. NCBI nr
Match:
XP_038895852.1 (uncharacterized protein LOC120084021 [Benincasa hispida])
HSP 1 Score: 107.8 bits (268), Expect = 5.2e-20
Identity = 56/135 (41.48%), Postives = 71/135 (52.59%), Query Frame = 0
Query: 1 MESLLQLVDSGWSADNGTFKPSYLQQLQRLLHEKVPNCGIG------------------- 60
ME+LL LV++GW +DNGTF+P YLQ L+R+LHEKV C +
Sbjct: 21 MEALLYLVETGWRSDNGTFQPGYLQHLERILHEKVLECALNQNTIECKVRSLKKQYNAVS 80
Query: 61 ------------------SHPNVKGMRHKPLPHYDDLSIVFGRDKAIGDSCQTPLDQAYE 98
SHPN KGM +K PHYDDLS VFG+D+A+G S + P A
Sbjct: 81 EMLSQSGFNWNEEFKCVQSHPNAKGMWNKSFPHYDDLSTVFGKDRAVGQSSENPYMMATN 140
BLAST of ClCG01G013815 vs. NCBI nr
Match:
XP_038902479.1 (uncharacterized protein At2g29880-like [Benincasa hispida])
HSP 1 Score: 100.1 bits (248), Expect = 1.1e-17
Identity = 53/146 (36.30%), Postives = 70/146 (47.95%), Query Frame = 0
Query: 1 MESLLQLVDSGWSADNGTFKPSYLQQLQRLLHEKVPNCGIG------------------- 60
+E+LL LV++GW +DNGTF+P YLQ L+R+LHEKVP C +
Sbjct: 21 VEALLYLVETGWRSDNGTFRPGYLQHLERILHEKVPGCTLNQNTIECKVRSLKKQYNIVS 80
Query: 61 -----------------------------SHPNVKGMRHKPLPHYDDLSIVFGRDKAIGD 98
SHPN K M +KP PHYDD S VFG+D+ +G
Sbjct: 81 EMLSQSGFDWNEEFKCVQVEREIFDLWVLSHPNAKRMWNKPFPHYDDFSTVFGKDRVVGK 140
BLAST of ClCG01G013815 vs. NCBI nr
Match:
XP_038892629.1 (uncharacterized protein At2g29880-like [Benincasa hispida])
HSP 1 Score: 95.9 bits (237), Expect = 2.1e-16
Identity = 52/140 (37.14%), Postives = 69/140 (49.29%), Query Frame = 0
Query: 1 MESLLQLVDSGWSADNGTFKPSYLQQLQRLLHEKVPNC---------------------- 60
+E+LL LV++GW DNGTF+P YLQ L+++LHEKVP C
Sbjct: 67 VEALLYLVETGWRFDNGTFRPGYLQHLEQILHEKVPGCALNHNTIECKVRSLKKQYNAVS 126
Query: 61 ------GIG--------------------SHPNVKGMRHKPLPHYDDLSIVFGRDKAIGD 93
G+G SHPN K M +KP PHYDDLS +FG+D+A+G
Sbjct: 127 EMLSQSGLGWNEEFKCVHVEREIFDLWVWSHPNAKRMWNKPFPHYDDLSTIFGKDRAVGQ 186
BLAST of ClCG01G013815 vs. NCBI nr
Match:
XP_038895773.1 (uncharacterized protein LOC120083935 [Benincasa hispida])
HSP 1 Score: 94.7 bits (234), Expect = 4.6e-16
Identity = 53/146 (36.30%), Postives = 68/146 (46.58%), Query Frame = 0
Query: 1 MESLLQLVDSGWSADNGTFKPSYLQQLQRLLHEKVPNCGIG------------------- 60
+E+LL LVD+GW +DNGTF+ YLQ L+R+ HEKV C +
Sbjct: 59 VEALLYLVDTGWRSDNGTFRLEYLQHLERIHHEKVLGCALNQNTIECKVRSLKKQCNAVS 118
Query: 61 -----------------------------SHPNVKGMRHKPLPHYDDLSIVFGRDKAIGD 98
SHPN KGM +KP PHYDDLS VFG+ KA+G
Sbjct: 119 EMLSQSGFDWNEEFKCVQVEREIFDPWVRSHPNAKGMWNKPFPHYDDLSTVFGKYKAVGQ 178
BLAST of ClCG01G013815 vs. ExPASy TrEMBL
Match:
A0A6P5NGC3 (uncharacterized protein LOC110279295 isoform X2 OS=Arachis duranensis OX=130453 GN=LOC110279295 PE=4 SV=1)
HSP 1 Score: 92.8 bits (229), Expect = 8.4e-16
Identity = 35/75 (46.67%), Postives = 52/75 (69.33%), Query Frame = 0
Query: 1 MESLLQLVDSGWSADNGTFKPSYLQQLQRLLHEKVPNCGIGSHPNVKGMRHKPLPHYDDL 60
+E L++L + W DNGTFK Y + L+++LHEK+P C + SHPN G+ +KP PH++ L
Sbjct: 25 VECLVELSTTSWKCDNGTFKSGYEKHLEKMLHEKIPGCDLKSHPNANGLYNKPFPHFEKL 84
Query: 61 SIVFGRDKAIGDSCQ 76
I FGRD+A G + +
Sbjct: 85 GIAFGRDRAQGGNAE 99
BLAST of ClCG01G013815 vs. ExPASy TrEMBL
Match:
A0A5A7V4P8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold403G001290 PE=4 SV=1)
HSP 1 Score: 89.4 bits (220), Expect = 9.3e-15
Identity = 40/80 (50.00%), Postives = 56/80 (70.00%), Query Frame = 0
Query: 1 MESLLQLVD-SGWSADNGTFKPSYLQQLQRLLHEKVPNCGIGSHPNVKGMRHKPLPHYDD 60
+E L++LV GW +DNGTF+P Y+ QL R++ EK+P C SHP KG+ +KP P+YD+
Sbjct: 21 VECLMELVSMGGWKSDNGTFRPRYIAQLVRMMAEKLPGC--QSHPAAKGLLNKPFPYYDE 80
Query: 61 LSIVFGRDKAIGDSCQTPLD 80
L+ VFGRD+A G +T D
Sbjct: 81 LTYVFGRDRATGRFAETFAD 98
BLAST of ClCG01G013815 vs. ExPASy TrEMBL
Match:
A0A5A7T5F8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold510G00400 PE=4 SV=1)
HSP 1 Score: 87.8 bits (216), Expect = 2.7e-14
Identity = 41/80 (51.25%), Postives = 55/80 (68.75%), Query Frame = 0
Query: 1 MESLLQLVD-SGWSADNGTFKPSYLQQLQRLLHEKVPNCGIGSHPNVKGMRHKPLPHYDD 60
+E L++LV GW +DNGTF P YL QL R++ EK+P C SHP KG+ +KP P+YD+
Sbjct: 21 VECLMELVSMGGWKSDNGTFCPGYLAQLVRMMVEKLPGC--QSHPAAKGLLNKPFPYYDE 80
Query: 61 LSIVFGRDKAIGDSCQTPLD 80
L+ VFGRD+A G +T D
Sbjct: 81 LTYVFGRDRATGRFTETFAD 98
BLAST of ClCG01G013815 vs. ExPASy TrEMBL
Match:
A0A5D3DTF3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold7319G00110 PE=4 SV=1)
HSP 1 Score: 87.4 bits (215), Expect = 3.5e-14
Identity = 40/90 (44.44%), Postives = 56/90 (62.22%), Query Frame = 0
Query: 1 MESLLQLVD-SGWSADNGTFKPSYLQQLQRLLHEKVPNCGI---GSHPNVKGMRHKPLPH 60
M+ L++LV GW +DNGTF+P YL QL ++ EK+P C + SH KG+ KP P+
Sbjct: 21 MKCLMELVSMGGWKSDNGTFQPGYLAQLIHMMAEKLPGCRVRATTSHRTAKGLLSKPFPY 80
Query: 61 YDDLSIVFGRDKAIGDSCQTPLDQAYETND 87
YD+L+ VFGRD+A G +T D + D
Sbjct: 81 YDELTYVFGRDRATGQFAETFADMGFNEPD 110
BLAST of ClCG01G013815 vs. ExPASy TrEMBL
Match:
A0A5D3BCA9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold986G00630 PE=4 SV=1)
HSP 1 Score: 86.7 bits (213), Expect = 6.1e-14
Identity = 40/80 (50.00%), Postives = 54/80 (67.50%), Query Frame = 0
Query: 1 MESLLQLVD-SGWSADNGTFKPSYLQQLQRLLHEKVPNCGIGSHPNVKGMRHKPLPHYDD 60
+E L++LV GW +DNGTF P YL QL R++ EK+P C SHP KG+ +KP P+YD+
Sbjct: 21 VECLMELVSMGGWKSDNGTFCPGYLAQLVRMMAEKLPGC--QSHPAAKGLLNKPFPYYDE 80
Query: 61 LSIVFGRDKAIGDSCQTPLD 80
L+ VFGRD+ G +T D
Sbjct: 81 LTYVFGRDRTTGRFTETFTD 98
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6P5NGC3 | 8.4e-16 | 46.67 | uncharacterized protein LOC110279295 isoform X2 OS=Arachis duranensis OX=130453 ... | [more] |
A0A5A7V4P8 | 9.3e-15 | 50.00 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7T5F8 | 2.7e-14 | 51.25 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5D3DTF3 | 3.5e-14 | 44.44 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5D3BCA9 | 6.1e-14 | 50.00 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
Match Name | E-value | Identity | Description | |