ClCG01G013480 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG01G013480
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr01: 26669432 .. 26670364 (-)
RNA-Seq ExpressionClCG01G013480
SyntenyClCG01G013480
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCATCAAGAAAATGTTTCTCATTAAAACCCTATTTACATTAGGGTTTGGAAACTCACATCTTCATAAGATCCGCCATCGCCTCTCCATATCCATTCCTTTGAGTTCGCCGTGGCCGGAAGCATTAACCAGTTGTATCGTTGGTCGTTTGCCGTTGGTTCCTAAAGGATCATCAACCGCCGCCGCCACCGGTTCGTGGTCTCATCTGTCCGCCGCGCCTCTGCAAATCCATTCGTCGCCTCCTCGATCTCGATCATTCCGCCACTGCGTCGTGCAGACCCGTCCGCCGCCGCATTGTGTAGATCCGTACCCGGCGCCACGTCGTGCAGATCCGTCCCGCAACTGCATCGTGCAGATCCGTCCTCGCTACCGCGTCGAGCAGACCCATGAATCACCGCATCGCGCAGATTCGTCCCCGGCACCACGTCGTGCAGATCCACGACCATCGCATCACGTAGATCAGTCCCCGTCGCAGCGTCGAGCAGATCCACGAACACCGCATCGCGCAGATCCGTCCCTGGCGCCGCGTCGAGCAGATCCACGAACACCGCATCGCATAGATCCGTCCCCGCCGCCGCGTCAAGCAGATCCACGAACATCGCATAGCGCAGATCTGTCCCTGGCGCCGCGTCGAGCAGATCCACGAACCGCATTGCGTAGATCCTTCCCCGCCGCTGGGTCGAGCAGATCCACGAACCGCCGCCGCATCGTGCAAGAACTTCTGCCGCCGCATCGTGCAGGTCTGTTCGCTGCCGCATCGTGCAAGTCAGTTCGCCGCTGCCTCGTGCAAATCCTTCCGCCACCGCCTCTGCATATCCTTTCTCGCCGCCGCCGGTTCGTGGTAGTTTTTGGGTTGACCGGTTCGTGGTTCGTTGTAGCAACTTTGCACCGCCGGTTCGTGGTAGTTTTTGGGTTTGCTAGTTCTTGGTAG

mRNA sequence

ATGCCCATCAAGAAAATGTTTCTCATTAAAACCCTATTTACATTAGGGTTTGGAAACTCACATCTTCATAAGATCCGCCATCGCCTCTCCATATCCATTCCTTTGAGTTCGCCGTGGCCGGAAGCATTAACCAGTTGTATCGTTGGTCGTTTGCCGTTGGTTCCTAAAGGATCATCAACCGCCGCCGCCACCGGTTCGTGGTCTCATCTGTCCGCCGCGCCTCTGCAAATCCATTCGTCGCCTCCTCGATCTCGATCATTCCGCCACTGCGTCGTGCAGACCCGTCCGCCGCCGCATTGTGTAGATCCGTACCCGGCGCCACGTCGTGCAGATCCGTCCCGCAACTGCATCGTGCAGATCCGTCCTCGCTACCGCGTCGAGCAGACCCATGAATCACCGCATCGCGCAGATTCGTCCCCGGCACCACGTCGTGCAGATCCACGACCATCGCATCACGTAGATCAGTCCCCGTCGCAGCGTCGAGCAGATCCACGAACACCGCATCGCGCAGATCCGTCCCTGGCGCCGCGTCGAGCAGATCCACGAACACCGCATCGCATAGATCCGTCCCCGCCGCCGCGTCAAGCAGATCCACGAACATCGCATAGCGCAGATCTGTCCCTGGCGCCGCGTCGAGCAGATCCACGAACCGCATTGCGTAGATCCTTCCCCGCCGCTGGGTCGAGCAGATCCACGAACCGCCGCCGCATCGTGCAAGAACTTCTGCCGCCGCATCGTGCAGGTCTGTTCGCTGCCGCATCGTGCAAGTCAGTTCGCCGCTGCCTCGTGCAAATCCTTCCGCCACCGCCTCTGCATATCCTTTCTCGCCGCCGCCGGTTCGTGGTAGTTTTTGGGTTGACCGGTTCGTGGTTCGTTGTAGCAACTTTGCACCGCCGGTTCGTGGTAGTTTTTGGGTTTGCTAGTTCTTGGTAG

Coding sequence (CDS)

ATGCCCATCAAGAAAATGTTTCTCATTAAAACCCTATTTACATTAGGGTTTGGAAACTCACATCTTCATAAGATCCGCCATCGCCTCTCCATATCCATTCCTTTGAGTTCGCCGTGGCCGGAAGCATTAACCAGTTGTATCGTTGGTCGTTTGCCGTTGGTTCCTAAAGGATCATCAACCGCCGCCGCCACCGGTTCGTGGTCTCATCTGTCCGCCGCGCCTCTGCAAATCCATTCGTCGCCTCCTCGATCTCGATCATTCCGCCACTGCGTCGTGCAGACCCGTCCGCCGCCGCATTGTGTAGATCCGTACCCGGCGCCACGTCGTGCAGATCCGTCCCGCAACTGCATCGTGCAGATCCGTCCTCGCTACCGCGTCGAGCAGACCCATGAATCACCGCATCGCGCAGATTCGTCCCCGGCACCACGTCGTGCAGATCCACGACCATCGCATCACGTAGATCAGTCCCCGTCGCAGCGTCGAGCAGATCCACGAACACCGCATCGCGCAGATCCGTCCCTGGCGCCGCGTCGAGCAGATCCACGAACACCGCATCGCATAGATCCGTCCCCGCCGCCGCGTCAAGCAGATCCACGAACATCGCATAGCGCAGATCTGTCCCTGGCGCCGCGTCGAGCAGATCCACGAACCGCATTGCGTAGATCCTTCCCCGCCGCTGGGTCGAGCAGATCCACGAACCGCCGCCGCATCGTGCAAGAACTTCTGCCGCCGCATCGTGCAGGTCTGTTCGCTGCCGCATCGTGCAAGTCAGTTCGCCGCTGCCTCGTGCAAATCCTTCCGCCACCGCCTCTGCATATCCTTTCTCGCCGCCGCCGGTTCGTGGTAGTTTTTGGGTTGACCGGTTCGTGGTTCGTTGTAGCAACTTTGCACCGCCGGTTCGTGGTAGTTTTTGGGTTTGCTAGTTCTTGGTAG

Protein sequence

MPIKKMFLIKTLFTLGFGNSHLHKIRHRLSISIPLSSPWPEALTSCIVGRLPLVPKGSSTAAATGSWSHLSAAPLQIHSSPPRSRSFRHCVVQTRPPPHCVDPYPAPRRADPSRNCIVQIRPRYRVEQTHESPHRADSSPAPRRADPRPSHHVDQSPSQRRADPRTPHRADPSLAPRRADPRTPHRIDPSPPPRQADPRTSHSADLSLAPRRADPRTALRRSFPAAGSSRSTNRRRIVQELLPPHRAGLFAAASCKSVRRCLVQILPPPPLHILSRRRRFVVVFGLTGSWFVVATLHRRFVVVFGFASSW
Homology
[Close]
BLAST of ClCG01G013480 vs. NCBI nr
Match: XP_041065244.1 (peroxisome proliferator-activated receptor gamma coactivator-related protein 1 [Carcharodon carcharias])

HSP 1 Score: 63.2 bits (152), Expect = 4.7e-06
Identity = 52/134 (38.81%), Postives = 71/134 (52.99%), Query Frame = 0 

Query: 96  PPPHCVDPYPAPRRADPSRNCIVQIRPRYRVEQTHESPHRADSSPAPRRADPRPS-HHVD 155
           P P   +P P PR A+PS        P  R  +   +P  A+ SP PR A+P P+    +
Sbjct: 663 PTPRAAEPSPTPRAAEPS--------PTPRAAEPSPTPRAAEPSPTPRAAEPSPTPRAAE 722

Query: 156 QSPSQRRADPR-TPHRADPSLAPRRADPR-TPHRIDPSPPPRQADPR-TSHSADLSLAPR 215
            SP+ R A+P  TP  A+PS  PR A+P  TP   +PSP PR A+P  T  +A+ S  PR
Sbjct: 723 PSPTPRAAEPSPTPRAAEPSPTPRAAEPSPTPRAAEPSPTPRAAEPSPTPRAAEPSPTPR 782

Query: 216 RADPRTALRRSFPA 226
            A+P    R + P+
Sbjct: 783 AAEPSPTPRAAEPS 788

[Close]
BLAST of ClCG01G013480 vs. NCBI nr
Match: XP_033739172.1 (mucin-2-like [Pecten maximus])

HSP 1 Score: 63.2 bits (152), Expect = 4.7e-06
Identity = 60/168 (35.71%), Postives = 84/168 (50.00%), Query Frame = 0 

Query: 71  SAAPLQIHSSPPRSRSFRHCVVQTRPPPHCVDPYPAPRRADPSRNCIVQIRPRYRVEQTH 130
           S  P + + SP   R+         P P   +P P PRR +PS      + PR       
Sbjct: 408 SPTPRRTNPSPTPRRT------NPSPTPLRTNPSPTPRRTNPS------LTPRR--TNPS 467

Query: 131 ESPHRADSSPAPRRADPRPSHHVDQSPSQRRADP---RTPHRADPSLAPRRADPR-TPHR 190
            +P R + SP  RR +P P+   + SP+ RR +P    TP R +PS  PRR +P  TP R
Sbjct: 468 PTPRRTNPSPTIRRTNPSPTLRTNLSPTPRRTNPIPSPTPRRTNPSPTPRRTNPSPTPRR 527

Query: 191 IDPSPPPRQADPR-TSHSADLSLAPRRADPRTALRRSFPAAGSSRSTN 234
            +PSP PR+ +P  T    ++S  PRR +P   LRR+ P+  + R TN
Sbjct: 528 TNPSPTPRRTNPSPTPRRTNISPTPRRTNPSPTLRRTNPSP-TPRRTN 560

The following BLAST results are available for this feature:
BLAST of ClCG01G013480 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_041065244.14.7e-0638.81peroxisome proliferator-activated receptor gamma coactivator-related protein 1 [... [more]
XP_033739172.14.7e-0635.71mucin-2-like [Pecten maximus][more]
BLAST of ClCG01G013480 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG01G013480 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG01G013480 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 93..235
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 124..187

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G013480.1ClCG01G013480.1mRNA