ClCG01G012870 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG01G012870
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionElectron transfer flavoprotein-ubiquinone oxidoreductase
LocationCG_Chr01: 25860878 .. 25861630 (-)
RNA-Seq ExpressionClCG01G012870
SyntenyClCG01G012870
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTAAATTAGCTCGGAGGTCTTTTGGTGTTATCCTTCAAATCAGGCTTAGGAAATCCAAATCACCACTGCTAAGGCTCAATTCTGAATCTGACTCCTCATTATCCTCCAATTTGTTGAATTCTTGAGAACCTTGGGTAAATTCATAACACTTTGAGACGAAATATTAGGTTTCAGAATGGGCCAATGTCATAGAGTGAATAATCTTTGTTTTTGCATATTACATTGAGAGGAACTATTATTCAATGAAGAATGTGTAGAAACCATGACTGGTTGAGAATAATTTACACTTATGCTTCATTTTCTATTTTTTATTTTTTTGTAAGCCACCTAATGCTTCTTTTTTTCGTAAGCCACCTAATGCTTCTTACATGAAGAAAATTGAGAATCCAACCAATTAGGATTCTGCATTAAGAAACTCACGAGGTGAGAACACCTTTCTTGAATGACACTATGATTAAACAGTTTCTCGGAGATTGCTAAAGGAGCATTTTATGTACCAGATGCTTCTGGGAGGGGATGGATGAGAAGAAAGAAAAAGGAGCACATCCAGTTAGATAGGAGATTCTTAAGAGGCCTATCAATTCAGGCGGTTAGAAGCTGGGAACTTAAAGGCTCACAACAAGGAGTTGTTAGCTAAATGGTCTTGTCGTTTTGCCCTTGAATCCAATTCTCTTTGGCATACGATCATTGTTAGCAAATTCGATCATCATCCTTATGAGATGTCGTCTAGGAGGGTTCTTAGCTCTATCTGA

mRNA sequence

ATTAAATTAGCTCGGAGTTTCTCGGAGATTGCTAAAGGAGCATTTTATGTACCAGATGCTTCTGGGAGGGGATGGATGAGAAGAAAGAAAAAGGAGCACATCCAGCGGTTAGAAGCTGGGAACTTAAAGGCTCACAACAAGGAGTTGTTAGCTAAATGGTCTTGTCGTTTTGCCCTTGAATCCAATTCTCTTTGGCATACGATCATTGTTAGCAAATTCGATCATCATCCTTATGAGATGTCGTCTAGGAGGGTTCTTAGCTCTATCTGA

Coding sequence (CDS)

ATTAAATTAGCTCGGAGTTTCTCGGAGATTGCTAAAGGAGCATTTTATGTACCAGATGCTTCTGGGAGGGGATGGATGAGAAGAAAGAAAAAGGAGCACATCCAGCGGTTAGAAGCTGGGAACTTAAAGGCTCACAACAAGGAGTTGTTAGCTAAATGGTCTTGTCGTTTTGCCCTTGAATCCAATTCTCTTTGGCATACGATCATTGTTAGCAAATTCGATCATCATCCTTATGAGATGTCGTCTAGGAGGGTTCTTAGCTCTATCTGA

Protein sequence

IKLARSFSEIAKGAFYVPDASGRGWMRRKKKEHIQRLEAGNLKAHNKELLAKWSCRFALESNSLWHTIIVSKFDHHPYEMSSRRVLSSI
Homology
BLAST of ClCG01G012870 vs. NCBI nr
Match: KAA0060701.1 (Electron transfer flavoprotein-ubiquinone oxidoreductase [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 1.3e-06
Identity = 29/49 (59.18%), Postives = 32/49 (65.31%), Query Frame = 0

Query: 37 LEAGNLKAHNKELLAKWSCRFALESNSLWHTIIVSKFDHHPYEMSSRRV 86
          LE  NL+  NK LLA W CRF LE  SLWH IIVSK   HP+E   +RV
Sbjct: 8  LEPSNLRIRNKALLANWLCRFTLEPESLWHRIIVSKHGIHPFEWMEKRV 56

BLAST of ClCG01G012870 vs. NCBI nr
Match: TYK08233.1 (Electron transfer flavoprotein-ubiquinone oxidoreductase [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 3.0e-06
Identity = 29/49 (59.18%), Postives = 32/49 (65.31%), Query Frame = 0

Query: 37 LEAGNLKAHNKELLAKWSCRFALESNSLWHTIIVSKFDHHPYEMSSRRV 86
          LE  NL+  NK LLA W CRF LE  SLWH IIVSK   HP+E   +RV
Sbjct: 8  LEPSNLRIRNKALLANWLCRFTLEPESLWHRIIVSKPGIHPFEWMEKRV 56

BLAST of ClCG01G012870 vs. NCBI nr
Match: KAA0057410.1 (hypothetical protein E6C27_scaffold280G002860 [Cucumis melo var. makuwa] >TYK30109.1 hypothetical protein E5676_scaffold216G00910 [Cucumis melo var. makuwa])

HSP 1 Score: 57.0 bits (136), Expect = 9.6e-05
Identity = 25/49 (51.02%), Postives = 35/49 (71.43%), Query Frame = 0

Query: 37  LEAGNLKAHNKELLAKWSCRFALESNSLWHTIIVSKFDHHPYEMSSRRV 86
           L+  NL+ HN+ LLA W   F+LESNSLWH IIV K + +P+E +++ V
Sbjct: 213 LKIDNLRIHNRALLANWLWHFSLESNSLWHRIIVCKHEIYPFEWTTKGV 261

BLAST of ClCG01G012870 vs. ExPASy TrEMBL
Match: A0A5A7V4N3 (Electron transfer flavoprotein-ubiquinone oxidoreductase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold496G00030 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 6.5e-07
Identity = 29/49 (59.18%), Postives = 32/49 (65.31%), Query Frame = 0

Query: 37 LEAGNLKAHNKELLAKWSCRFALESNSLWHTIIVSKFDHHPYEMSSRRV 86
          LE  NL+  NK LLA W CRF LE  SLWH IIVSK   HP+E   +RV
Sbjct: 8  LEPSNLRIRNKALLANWLCRFTLEPESLWHRIIVSKHGIHPFEWMEKRV 56

BLAST of ClCG01G012870 vs. ExPASy TrEMBL
Match: A0A5D3C8M3 (Electron transfer flavoprotein-ubiquinone oxidoreductase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold427G00040 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.4e-06
Identity = 29/49 (59.18%), Postives = 32/49 (65.31%), Query Frame = 0

Query: 37 LEAGNLKAHNKELLAKWSCRFALESNSLWHTIIVSKFDHHPYEMSSRRV 86
          LE  NL+  NK LLA W CRF LE  SLWH IIVSK   HP+E   +RV
Sbjct: 8  LEPSNLRIRNKALLANWLCRFTLEPESLWHRIIVSKPGIHPFEWMEKRV 56

BLAST of ClCG01G012870 vs. ExPASy TrEMBL
Match: A0A5D3E2V6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G00910 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.7e-05
Identity = 25/49 (51.02%), Postives = 35/49 (71.43%), Query Frame = 0

Query: 37  LEAGNLKAHNKELLAKWSCRFALESNSLWHTIIVSKFDHHPYEMSSRRV 86
           L+  NL+ HN+ LLA W   F+LESNSLWH IIV K + +P+E +++ V
Sbjct: 213 LKIDNLRIHNRALLANWLWHFSLESNSLWHRIIVCKHEIYPFEWTTKGV 261

BLAST of ClCG01G012870 vs. ExPASy TrEMBL
Match: A0A2P5D2K4 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_264340 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 5.2e-04
Identity = 26/47 (55.32%), Postives = 28/47 (59.57%), Query Frame = 0

Query: 37 LEAGNLKAHNKELLAKWSCRFALESNSLWHTIIVSKFDHHPYEMSSR 84
          LE GNL   NK LL KW  RFALE N LWH +I SK+   P    SR
Sbjct: 32 LEIGNLVRRNKALLTKWLWRFALEKNELWHKVIRSKYGISPNNWDSR 78

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0060701.11.3e-0659.18Electron transfer flavoprotein-ubiquinone oxidoreductase [Cucumis melo var. maku... [more]
TYK08233.13.0e-0659.18Electron transfer flavoprotein-ubiquinone oxidoreductase [Cucumis melo var. maku... [more]
KAA0057410.19.6e-0551.02hypothetical protein E6C27_scaffold280G002860 [Cucumis melo var. makuwa] >TYK301... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7V4N36.5e-0759.18Electron transfer flavoprotein-ubiquinone oxidoreductase OS=Cucumis melo var. ma... [more]
A0A5D3C8M31.4e-0659.18Electron transfer flavoprotein-ubiquinone oxidoreductase OS=Cucumis melo var. ma... [more]
A0A5D3E2V64.7e-0551.02Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A2P5D2K45.2e-0455.32Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_264340 PE=4 SV... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G012870.1ClCG01G012870.1mRNA