ClCG01G012020 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG01G012020
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRetrotrans_gag domain-containing protein
LocationCG_Chr01: 21677185 .. 21678296 (+)
RNA-Seq ExpressionClCG01G012020
SyntenyClCG01G012020
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACCTCAGAGCTTTTCCGTTCTTACTGAAGGATGATGCCAAGGATTGGTTTATTTCCTTCCTGGCGGTTTCGTGACCACGTGGAAAGAAATGAAGAAGCAGTTCTTGGAAAAGTTCTTCCCAGCTTTGAGAGCGACGAGAATTAGGAAGAAAATATACAACATCACTCAGATCGCCAGTAAGACCCTAGATGAATTTTGGGAGTGCTTTAAGCATTTGTGCGCCAGCTACCCCGACCACCAAATCTTAGATGTTATGTTCATCTAGTATTTCTACAAAGAGCTCGTCCCTAGTGACAGAAGTACTATCTACGCAGCTAATGGTGTGCACTAGTGAGCAAGACCCTCATGAAGGGCAGACAACTGATATCCATCATGGTAGCAAATGCCCAGCAGTTCGAGATGTGAGCTCCCAGAAATGTCACGTCGACAACTTAAGAGGTAAGTGAATTAAGAGCTGAACTTGTTAAATTATCTTCTCTTGTGAAACAGGCTTTCTTTGCTAAGGCACAAACCTAAGAGCCCGCTGCTGAGGTGCACTATGCTGGGAATCAACCAGGTGGATAGTCATAGAATTACAATCATTGGGGCAATCAAAGGAACTAGGGTCAGAGCAGCTCTAGGATGCCATTGGAGGACATGATAAAGAGCCTAGTAGAATCTACCATGTTGATCAAGCAGAGCTAGGAGCTGTTTCAGCAAACCACTGCTACTCATATGAAGAGTATGGCCTCTCAGATCTCCCAGCTGGCTAATGCGGTCTACAGGTTGGACACTTAGTATCGGAAGCTTCCTTCCCAACCTGAGACCAATGTGCGTAACATCAACGCCATATCTGCTATGAGTTGCATGGAGAGCTCTCAAACGTCTGTTCCTAAACCAGTGATTGAGCCTGTTAAAGTTGTGAATGCTAAGGACTCTGAAGAAAAGATGGCCAATTCACCAAGAAGACAATGGGTAAGTTTTGATCCATCTCTAAATTTAAATTCTTATTTATCTGTTGCTTCTTTCTACCCATGCATTTTCTTGTGTGGGTATTTCTACCAACACAGTGTCAAAATGCATGATTAAAGTTCAAATTAAGGACATGGTAGATATGAAGAAAAGTTAA

mRNA sequence

ATGAACCTCAGAGCTTTTCCGTTCTTACTGAAGGATGATGCCAAGGATTGGTTTATTTCCTTCCTGGCGGTTTCAATTAGGAAGAAAATATACAACATCACTCAGATCGCCAGTAAGACCCTAGATGAATTTTGGGAGTGCTTTAAGCATTTGTGCGCCAGCTACCCCGACCACCAAATCTTAGATCAAATGCCCAGCAGTTCGAGATGTGAGCTCCCAGAAATGTCACGTCGACAACTTAAGAGGCTTTCTTTGCTAAGGCACAAACCTAAGAGCCCGCTGCTGAGGTGCACTATGCTGGGAATCAACCAGGATGCCATTGGAGGACATGATAAAGAGCCTAGTAGAATCTACCATGTTGATCAAGCAGAGCTAGGAGCTTATCGGAAGCTTCCTTCCCAACCTGAGACCAATGTGCGTAACATCAACGCCATATCTGCTATGAGTTGCATGGAGAGCTCTCAAACGTCTGTTCCTAAACCAGTGATTGAGCCTGTTAAAGTTGTGAATGCTAAGGACTCTGAAGAAAAGATGGCCAATTCACCAAGAAGACAATGGGACATGGTAGATATGAAGAAAAGTTAA

Coding sequence (CDS)

ATGAACCTCAGAGCTTTTCCGTTCTTACTGAAGGATGATGCCAAGGATTGGTTTATTTCCTTCCTGGCGGTTTCAATTAGGAAGAAAATATACAACATCACTCAGATCGCCAGTAAGACCCTAGATGAATTTTGGGAGTGCTTTAAGCATTTGTGCGCCAGCTACCCCGACCACCAAATCTTAGATCAAATGCCCAGCAGTTCGAGATGTGAGCTCCCAGAAATGTCACGTCGACAACTTAAGAGGCTTTCTTTGCTAAGGCACAAACCTAAGAGCCCGCTGCTGAGGTGCACTATGCTGGGAATCAACCAGGATGCCATTGGAGGACATGATAAAGAGCCTAGTAGAATCTACCATGTTGATCAAGCAGAGCTAGGAGCTTATCGGAAGCTTCCTTCCCAACCTGAGACCAATGTGCGTAACATCAACGCCATATCTGCTATGAGTTGCATGGAGAGCTCTCAAACGTCTGTTCCTAAACCAGTGATTGAGCCTGTTAAAGTTGTGAATGCTAAGGACTCTGAAGAAAAGATGGCCAATTCACCAAGAAGACAATGGGACATGGTAGATATGAAGAAAAGTTAA

Protein sequence

MNLRAFPFLLKDDAKDWFISFLAVSIRKKIYNITQIASKTLDEFWECFKHLCASYPDHQILDQMPSSSRCELPEMSRRQLKRLSLLRHKPKSPLLRCTMLGINQDAIGGHDKEPSRIYHVDQAELGAYRKLPSQPETNVRNINAISAMSCMESSQTSVPKPVIEPVKVVNAKDSEEKMANSPRRQWDMVDMKKS
Homology
BLAST of ClCG01G012020 vs. NCBI nr
Match: XP_038876529.1 (uncharacterized protein LOC120068960 [Benincasa hispida])

HSP 1 Score: 75.9 bits (185), Expect = 4.4e-10
Identity = 38/87 (43.68%), Postives = 48/87 (55.17%), Query Frame = 0

Query: 1   MNLRAFPFLLKDDAKDWFI-----------------------SFLAVSIRKKIYNITQIA 60
           +NLRAFPF L+DD KDW                         +F A SIRK IY I Q  
Sbjct: 79  LNLRAFPFSLQDDTKDWLYYLAPESITTWNELKKKFLEKILPAFRAHSIRKDIYGIKQFM 138

Query: 61  SKTLDEFWECFKHLCASYPDHQILDQM 65
            ++L E+WEC+K+LCA+ P HQI DQ+
Sbjct: 139 GESLSEYWECYKYLCANVPRHQIYDQL 165

BLAST of ClCG01G012020 vs. NCBI nr
Match: XP_031278099.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC116136556 [Pistacia vera])

HSP 1 Score: 72.0 bits (175), Expect = 6.3e-09
Identity = 55/153 (35.95%), Postives = 69/153 (45.10%), Query Frame = 0

Query: 1   MNLRAFPFLLKDDAKDW-----------------------FISFLAVSIRKKIYNITQIA 60
           + LRAFPFLL+DDAKDW                       F    A +IRK+I  I Q  
Sbjct: 134 IKLRAFPFLLRDDAKDWLYYLPSGTVATWNAMKRLFLERYFPDSKAATIRKEICGIRQYN 193

Query: 61  SKTLDEFWECFKHLCASYPDHQILDQMPSSSRCE-LPEMSRRQLKRLS---LLRHKPK-S 120
            +TL E+WE FK LCAS P HQI DQ+      E L  M R  +   S   L+   PK +
Sbjct: 194 GETLYEYWERFKKLCASCPHHQISDQLLIQYLYEGLLPMERNMIDAASGDALVDKTPKAA 253

Query: 121 PLLRCTMLGINQDAIGGHDKEPSRIYHVDQAEL 126
             L   M   +Q     HD  P R+  V  + +
Sbjct: 254 KQLISNMAANSQQFCTRHDAPPKRVNEVSTSSI 286

BLAST of ClCG01G012020 vs. NCBI nr
Match: XP_022156327.1 (uncharacterized protein LOC111023248 [Momordica charantia])

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-08
Identity = 40/86 (46.51%), Postives = 49/86 (56.98%), Query Frame = 0

Query: 1   MNLRAFPFLLKDDAKD-----------------------WFISFLAVSIRKKIYNITQIA 60
           +NLRAF F LKD AKD                       +F +  A +IRK+IY ITQI+
Sbjct: 75  INLRAFXFSLKDQAKDXLYYLPSGSITTWNKMKRLFLDKFFPASRAANIRKEIYGITQIS 134

Query: 61  SKTLDEFWECFKHLCASYPDHQILDQ 64
            +TL E+WE FK LCAS+P HQI DQ
Sbjct: 135 GETLYEYWERFKRLCASFPHHQISDQ 160

BLAST of ClCG01G012020 vs. NCBI nr
Match: XP_041011356.1 (uncharacterized protein LOC121255143 [Juglans microcarpa x Juglans regia])

HSP 1 Score: 69.7 bits (169), Expect = 3.1e-08
Identity = 62/207 (29.95%), Postives = 89/207 (43.00%), Query Frame = 0

Query: 1   MNLRAFPFLLKDDAKDW-----------------------FISFLAVSIRKKIYNITQIA 60
           + LRAFPF LKD AKDW                       F +  A +IRK+I  I Q  
Sbjct: 78  IKLRAFPFSLKDSAKDWLYYLPSGSIVTWNEMKGLFLAEYFPTSRAANIRKEICGIRQHN 137

Query: 61  SKTLDEFWECFKHLCASYPDHQILDQMPSSSRCE-LPEMSRRQLKRL---SLLRHKPKSP 120
            ++L E+WECFK LCASYP HQI +Q+      E L    R  +      SL+   P+  
Sbjct: 138 EESLHEYWECFKKLCASYPHHQISEQLLIQYFYEGLHSTDRSMIDAASGGSLVDKTPEGA 197

Query: 121 LLRCTMLGINQDAIGGHDKEPSRIYHVDQAELGAYRKLPSQPETNVRNI---NAISAMSC 173
                 +  N    G     PS+  HV++  + +  +  +   + VR +   N  +  +C
Sbjct: 198 RHLIANMAANSQQFGTRLDLPSK--HVNEVNISSLEQQIASLTSFVRQMAVGNMQTTKAC 257

BLAST of ClCG01G012020 vs. NCBI nr
Match: XP_027368228.1 (uncharacterized protein LOC113874203 [Abrus precatorius])

HSP 1 Score: 69.3 bits (168), Expect = 4.1e-08
Identity = 39/87 (44.83%), Postives = 46/87 (52.87%), Query Frame = 0

Query: 1   MNLRAFPFLLKDDAKDW-----------------------FISFLAVSIRKKIYNITQIA 60
           + LRAFPF L   AKDW                       F++  A SIRK+I  I QI 
Sbjct: 143 IKLRAFPFSLDGSAKDWLYYLHLGSITSWQDMKRMFLEKFFLASRAASIRKEICGIRQIT 202

Query: 61  SKTLDEFWECFKHLCASYPDHQILDQM 65
            +TLDE+WE FK LCAS P HQI DQ+
Sbjct: 203 RETLDEYWERFKKLCASCPHHQISDQL 229

BLAST of ClCG01G012020 vs. ExPASy TrEMBL
Match: A0A6J1DRS5 (uncharacterized protein LOC111023248 OS=Momordica charantia OX=3673 GN=LOC111023248 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 5.2e-09
Identity = 40/86 (46.51%), Postives = 49/86 (56.98%), Query Frame = 0

Query: 1   MNLRAFPFLLKDDAKD-----------------------WFISFLAVSIRKKIYNITQIA 60
           +NLRAF F LKD AKD                       +F +  A +IRK+IY ITQI+
Sbjct: 75  INLRAFXFSLKDQAKDXLYYLPSGSITTWNKMKRLFLDKFFPASRAANIRKEIYGITQIS 134

Query: 61  SKTLDEFWECFKHLCASYPDHQILDQ 64
            +TL E+WE FK LCAS+P HQI DQ
Sbjct: 135 GETLYEYWERFKRLCASFPHHQISDQ 160

BLAST of ClCG01G012020 vs. ExPASy TrEMBL
Match: A0A6P6T172 (uncharacterized protein LOC113696454 OS=Coffea arabica OX=13443 GN=LOC113696454 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 5.8e-08
Identity = 38/86 (44.19%), Postives = 44/86 (51.16%), Query Frame = 0

Query: 1   MNLRAFPFLLKDDAKDW-----------------------FISFLAVSIRKKIYNITQIA 60
           + LRAFPF L D AKDW                       F +  A +IRK+I  + Q  
Sbjct: 141 IKLRAFPFSLADKAKDWLFYLPSGSITTWEELKRRFLEKFFPTSRAANIRKEICGVRQAN 200

Query: 61  SKTLDEFWECFKHLCASYPDHQILDQ 64
            KTL E+WECFK LCAS P HQI DQ
Sbjct: 201 GKTLYEYWECFKQLCASCPHHQIPDQ 226

BLAST of ClCG01G012020 vs. ExPASy TrEMBL
Match: A0A1U7ZEK1 (uncharacterized protein LOC104589313 OS=Nelumbo nucifera OX=4432 GN=LOC104589313 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 9.8e-08
Identity = 38/87 (43.68%), Postives = 45/87 (51.72%), Query Frame = 0

Query: 1   MNLRAFPFLLKDDAKDW-----------------------FISFLAVSIRKKIYNITQIA 60
           + LRAFPF L D AKDW                       F +  A +IRK+I  I Q  
Sbjct: 137 IKLRAFPFSLADKAKDWLFYAPSGSITTWNEMKKLFLEKFFPASRAANIRKEICGIKQFN 196

Query: 61  SKTLDEFWECFKHLCASYPDHQILDQM 65
            +TL E+WE FK LCASYP HQI DQ+
Sbjct: 197 GETLYEYWERFKQLCASYPQHQIPDQL 223

BLAST of ClCG01G012020 vs. ExPASy TrEMBL
Match: A0A2I4EMQ0 (LOW QUALITY PROTEIN: uncharacterized protein LOC108990986 OS=Juglans regia OX=51240 GN=LOC108990986 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.7e-07
Identity = 69/228 (30.26%), Postives = 90/228 (39.47%), Query Frame = 0

Query: 1   MNLRAFPFLLKDDAKDWFI-----------------------SFLAVSIRKKIYNITQIA 60
           + LRAFPF LKD AKDWF                        +  A +IRK+I +I Q  
Sbjct: 99  IKLRAFPFSLKDSAKDWFYYLPSRSIVTWNEMKRLVLEKYFPASRAANIRKEICDIRQHN 158

Query: 61  SKTLDEFWECFKHLCASYPDHQILDQMPSSSRCE-LPEMSRRQLKRLS---LLRHKPKSP 120
            ++L E+WE FK  CAS P HQI +Q+      E L    R  +   S   L+   P++ 
Sbjct: 159 EESLHEYWEHFKKFCASCPHHQISEQLLIQYFYEGLHSTDRSMIDAASGGALVDKTPEAA 218

Query: 121 LLRCTMLGINQDAIGGHDKEPSR--------------------IYHVDQAELGAYRKLPS 180
                 + +N    G     PS+                       + Q E  + RKLPS
Sbjct: 219 RNLIANMAVNSQQFGTRLDLPSKHVSKETRASIQSLDNQMGQMATAISQLEAQSSRKLPS 278

BLAST of ClCG01G012020 vs. ExPASy TrEMBL
Match: A0A6P6X8T1 (Reverse transcriptase OS=Coffea arabica OX=13443 GN=LOC113740845 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.2e-07
Identity = 51/153 (33.33%), Postives = 64/153 (41.83%), Query Frame = 0

Query: 1   MNLRAFPFLLKDDAKDW-----------------------FISFLAVSIRKKIYNITQIA 60
           + LRAFPF L D AKDW                       F +  A SIRK I  I Q  
Sbjct: 135 IKLRAFPFFLADKAKDWLYYLPSGSISTWTDMKKHFLEKFFPASRAASIRKDICGIRQFN 194

Query: 61  SKTLDEFWECFKHLCASYPDHQILDQMPSSSRCE-LPEMSRRQLKRL---SLLRHKPKSP 120
            +TL E+WE FK LCAS P HQI DQ+      E L +  RR +      SL+   P   
Sbjct: 195 GETLHEYWERFKQLCASCPHHQIPDQLLIQYFYEGLSQTDRRIIDAASGGSLVNKTPTEA 254

Query: 121 LLRCTMLGINQDAIGG-HDKEPSRIYHVDQAEL 126
               + +  N    G  HD    R+  V  + +
Sbjct: 255 RSLISSMAANAQQFGDRHDNTTRRVNEVSNSSI 287

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038876529.14.4e-1043.68uncharacterized protein LOC120068960 [Benincasa hispida][more]
XP_031278099.16.3e-0935.95LOW QUALITY PROTEIN: uncharacterized protein LOC116136556 [Pistacia vera][more]
XP_022156327.11.1e-0846.51uncharacterized protein LOC111023248 [Momordica charantia][more]
XP_041011356.13.1e-0829.95uncharacterized protein LOC121255143 [Juglans microcarpa x Juglans regia][more]
XP_027368228.14.1e-0844.83uncharacterized protein LOC113874203 [Abrus precatorius][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DRS55.2e-0946.51uncharacterized protein LOC111023248 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6P6T1725.8e-0844.19uncharacterized protein LOC113696454 OS=Coffea arabica OX=13443 GN=LOC113696454 ... [more]
A0A1U7ZEK19.8e-0843.68uncharacterized protein LOC104589313 OS=Nelumbo nucifera OX=4432 GN=LOC104589313... [more]
A0A2I4EMQ01.7e-0730.26LOW QUALITY PROTEIN: uncharacterized protein LOC108990986 OS=Juglans regia OX=51... [more]
A0A6P6X8T12.2e-0733.33Reverse transcriptase OS=Coffea arabica OX=13443 GN=LOC113740845 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 174..194

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G012020.1ClCG01G012020.1mRNA