ClCG01G012020 (gene) Watermelon (Charleston Gray) v2.5
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAACCTCAGAGCTTTTCCGTTCTTACTGAAGGATGATGCCAAGGATTGGTTTATTTCCTTCCTGGCGGTTTCGTGACCACGTGGAAAGAAATGAAGAAGCAGTTCTTGGAAAAGTTCTTCCCAGCTTTGAGAGCGACGAGAATTAGGAAGAAAATATACAACATCACTCAGATCGCCAGTAAGACCCTAGATGAATTTTGGGAGTGCTTTAAGCATTTGTGCGCCAGCTACCCCGACCACCAAATCTTAGATGTTATGTTCATCTAGTATTTCTACAAAGAGCTCGTCCCTAGTGACAGAAGTACTATCTACGCAGCTAATGGTGTGCACTAGTGAGCAAGACCCTCATGAAGGGCAGACAACTGATATCCATCATGGTAGCAAATGCCCAGCAGTTCGAGATGTGAGCTCCCAGAAATGTCACGTCGACAACTTAAGAGGTAAGTGAATTAAGAGCTGAACTTGTTAAATTATCTTCTCTTGTGAAACAGGCTTTCTTTGCTAAGGCACAAACCTAAGAGCCCGCTGCTGAGGTGCACTATGCTGGGAATCAACCAGGTGGATAGTCATAGAATTACAATCATTGGGGCAATCAAAGGAACTAGGGTCAGAGCAGCTCTAGGATGCCATTGGAGGACATGATAAAGAGCCTAGTAGAATCTACCATGTTGATCAAGCAGAGCTAGGAGCTGTTTCAGCAAACCACTGCTACTCATATGAAGAGTATGGCCTCTCAGATCTCCCAGCTGGCTAATGCGGTCTACAGGTTGGACACTTAGTATCGGAAGCTTCCTTCCCAACCTGAGACCAATGTGCGTAACATCAACGCCATATCTGCTATGAGTTGCATGGAGAGCTCTCAAACGTCTGTTCCTAAACCAGTGATTGAGCCTGTTAAAGTTGTGAATGCTAAGGACTCTGAAGAAAAGATGGCCAATTCACCAAGAAGACAATGGGTAAGTTTTGATCCATCTCTAAATTTAAATTCTTATTTATCTGTTGCTTCTTTCTACCCATGCATTTTCTTGTGTGGGTATTTCTACCAACACAGTGTCAAAATGCATGATTAAAGTTCAAATTAAGGACATGGTAGATATGAAGAAAAGTTAA ATGAACCTCAGAGCTTTTCCGTTCTTACTGAAGGATGATGCCAAGGATTGGTTTATTTCCTTCCTGGCGGTTTCAATTAGGAAGAAAATATACAACATCACTCAGATCGCCAGTAAGACCCTAGATGAATTTTGGGAGTGCTTTAAGCATTTGTGCGCCAGCTACCCCGACCACCAAATCTTAGATCAAATGCCCAGCAGTTCGAGATGTGAGCTCCCAGAAATGTCACGTCGACAACTTAAGAGGCTTTCTTTGCTAAGGCACAAACCTAAGAGCCCGCTGCTGAGGTGCACTATGCTGGGAATCAACCAGGATGCCATTGGAGGACATGATAAAGAGCCTAGTAGAATCTACCATGTTGATCAAGCAGAGCTAGGAGCTTATCGGAAGCTTCCTTCCCAACCTGAGACCAATGTGCGTAACATCAACGCCATATCTGCTATGAGTTGCATGGAGAGCTCTCAAACGTCTGTTCCTAAACCAGTGATTGAGCCTGTTAAAGTTGTGAATGCTAAGGACTCTGAAGAAAAGATGGCCAATTCACCAAGAAGACAATGGGACATGGTAGATATGAAGAAAAGTTAA ATGAACCTCAGAGCTTTTCCGTTCTTACTGAAGGATGATGCCAAGGATTGGTTTATTTCCTTCCTGGCGGTTTCAATTAGGAAGAAAATATACAACATCACTCAGATCGCCAGTAAGACCCTAGATGAATTTTGGGAGTGCTTTAAGCATTTGTGCGCCAGCTACCCCGACCACCAAATCTTAGATCAAATGCCCAGCAGTTCGAGATGTGAGCTCCCAGAAATGTCACGTCGACAACTTAAGAGGCTTTCTTTGCTAAGGCACAAACCTAAGAGCCCGCTGCTGAGGTGCACTATGCTGGGAATCAACCAGGATGCCATTGGAGGACATGATAAAGAGCCTAGTAGAATCTACCATGTTGATCAAGCAGAGCTAGGAGCTTATCGGAAGCTTCCTTCCCAACCTGAGACCAATGTGCGTAACATCAACGCCATATCTGCTATGAGTTGCATGGAGAGCTCTCAAACGTCTGTTCCTAAACCAGTGATTGAGCCTGTTAAAGTTGTGAATGCTAAGGACTCTGAAGAAAAGATGGCCAATTCACCAAGAAGACAATGGGACATGGTAGATATGAAGAAAAGTTAA MNLRAFPFLLKDDAKDWFISFLAVSIRKKIYNITQIASKTLDEFWECFKHLCASYPDHQILDQMPSSSRCELPEMSRRQLKRLSLLRHKPKSPLLRCTMLGINQDAIGGHDKEPSRIYHVDQAELGAYRKLPSQPETNVRNINAISAMSCMESSQTSVPKPVIEPVKVVNAKDSEEKMANSPRRQWDMVDMKKS Homology
BLAST of ClCG01G012020 vs. NCBI nr
Match: XP_038876529.1 (uncharacterized protein LOC120068960 [Benincasa hispida]) HSP 1 Score: 75.9 bits (185), Expect = 4.4e-10 Identity = 38/87 (43.68%), Postives = 48/87 (55.17%), Query Frame = 0
BLAST of ClCG01G012020 vs. NCBI nr
Match: XP_031278099.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC116136556 [Pistacia vera]) HSP 1 Score: 72.0 bits (175), Expect = 6.3e-09 Identity = 55/153 (35.95%), Postives = 69/153 (45.10%), Query Frame = 0
BLAST of ClCG01G012020 vs. NCBI nr
Match: XP_022156327.1 (uncharacterized protein LOC111023248 [Momordica charantia]) HSP 1 Score: 71.2 bits (173), Expect = 1.1e-08 Identity = 40/86 (46.51%), Postives = 49/86 (56.98%), Query Frame = 0
BLAST of ClCG01G012020 vs. NCBI nr
Match: XP_041011356.1 (uncharacterized protein LOC121255143 [Juglans microcarpa x Juglans regia]) HSP 1 Score: 69.7 bits (169), Expect = 3.1e-08 Identity = 62/207 (29.95%), Postives = 89/207 (43.00%), Query Frame = 0
BLAST of ClCG01G012020 vs. NCBI nr
Match: XP_027368228.1 (uncharacterized protein LOC113874203 [Abrus precatorius]) HSP 1 Score: 69.3 bits (168), Expect = 4.1e-08 Identity = 39/87 (44.83%), Postives = 46/87 (52.87%), Query Frame = 0
BLAST of ClCG01G012020 vs. ExPASy TrEMBL
Match: A0A6J1DRS5 (uncharacterized protein LOC111023248 OS=Momordica charantia OX=3673 GN=LOC111023248 PE=4 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 5.2e-09 Identity = 40/86 (46.51%), Postives = 49/86 (56.98%), Query Frame = 0
BLAST of ClCG01G012020 vs. ExPASy TrEMBL
Match: A0A6P6T172 (uncharacterized protein LOC113696454 OS=Coffea arabica OX=13443 GN=LOC113696454 PE=4 SV=1) HSP 1 Score: 67.8 bits (164), Expect = 5.8e-08 Identity = 38/86 (44.19%), Postives = 44/86 (51.16%), Query Frame = 0
BLAST of ClCG01G012020 vs. ExPASy TrEMBL
Match: A0A1U7ZEK1 (uncharacterized protein LOC104589313 OS=Nelumbo nucifera OX=4432 GN=LOC104589313 PE=4 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 9.8e-08 Identity = 38/87 (43.68%), Postives = 45/87 (51.72%), Query Frame = 0
BLAST of ClCG01G012020 vs. ExPASy TrEMBL
Match: A0A2I4EMQ0 (LOW QUALITY PROTEIN: uncharacterized protein LOC108990986 OS=Juglans regia OX=51240 GN=LOC108990986 PE=4 SV=1) HSP 1 Score: 66.2 bits (160), Expect = 1.7e-07 Identity = 69/228 (30.26%), Postives = 90/228 (39.47%), Query Frame = 0
BLAST of ClCG01G012020 vs. ExPASy TrEMBL
Match: A0A6P6X8T1 (Reverse transcriptase OS=Coffea arabica OX=13443 GN=LOC113740845 PE=4 SV=1) HSP 1 Score: 65.9 bits (159), Expect = 2.2e-07 Identity = 51/153 (33.33%), Postives = 64/153 (41.83%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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