ClCG01G011645 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG01G011645
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Retrotransposon protein
Location	CG_Chr01: 19493539 .. 19494309 (+)
RNA-Seq Expression	ClCG01G011645
Synteny	ClCG01G011645

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGGCCTAGGCTATAGTGGGTTTGGTTGGAACGCGGAGCGCAAATGTATTGACTGTGAGGCGAAGATATTTGACACATGTGTCAAGGTAATTTCATTACTTGTTTTATTTATTTCTTCTTCTTTTAAATTTGTCTTGGCCATAACATAACACATTTCACCTTTAACAGAGTCATCCGAGTGCAAAAGAACTACGCCATAAGTCATTTCCGTACTATGACGACTTGGCCATCGTATTCGGCAAAGACAGAGCCACAGGGAGTCATGCAACCACCACTGCAAAGGTTGGATTTGAACCTGTTATGGAAGAGGAAAACGAGGACATCCTGAATAACCAATCCCTAGACTTTGAGAACTTCTATATTCCTGATCCACCTTTTGGCAGCTCGCCCATGTCAGACGACATTCCAACTACCCCCAGCGGTAGAGGGTCTGAGAGTAGCTTGCCATCAAGGAGTAGGAGGTCCCGAATTTCCTCGATTGGAGAGTACAACGAGGTGGTTCGTGAGGGATTCCAACTTCTGACGAAGTCCATTGACGACATTGCACAGTGGCTTGTCATGAACAAGGACCTGGCAAGGCGTCGTTGTCGAGAACTATACGCTGAGCTACAATCCATTCCTGGTCTGTCGGTATAGGATGGCTTGACTGTTGCACGGTCATTGCTTGCAGATCCAATGCTGTTAAGCCACTTTGTGGACTAGCCACCACAATGAAGTACGACTATTTCATGCAAGTCCTCGGGCGACCACAGGATCCAGCACCATGA

mRNA sequence

ATGTTGGGCCTAGGCTATAGTGGGTTTGGTTGGAACGCGGAGCGCAAATGTATTGACTGTGAGGCGAAGATATTTGACACATGTGTCAAGAGTCATCCGAGTGCAAAAGAACTACGCCATAAGTCATTTCCGTACTATGACGACTTGGCCATCGTATTCGGCAAAGACAGAGCCACAGGGAGTCATGCAACCACCACTGCAAAGGTTGGATTTGAACCTGTTATGGAAGAGGAAAACGAGGACATCCTGAATAACCAATCCCTAGACTTTGAGAACTTCTATATTCCTGATCCACCTTTTGGCAGCTCGCCCATGTCAGACGACATTCCAACTACCCCCAGCGGTAGAGGGTCTGAGAGTAGCTTGCCATCAAGGAGTAGGAGGTCCCGAATTTCCTCGATTGGAGAGTACAACGAGGTGGTTCGTGAGGGATTCCAACTTCTGACGAAGTCCATTGACGACATTGCACAGTGGCTTGTCATGAACAAGGACCTGGCAAGGCGTCGTTGTCGAGAACTATACGCTGAGCTACAATCCATTCCTGGTCTATCCAATGCTGTTAAGCCACTTTGTGGACTAGCCACCACAATGAAGTACGACTATTTCATGCAAGTCCTCGGGCGACCACAGGATCCAGCACCATGA

Coding sequence (CDS)

ATGTTGGGCCTAGGCTATAGTGGGTTTGGTTGGAACGCGGAGCGCAAATGTATTGACTGTGAGGCGAAGATATTTGACACATGTGTCAAGAGTCATCCGAGTGCAAAAGAACTACGCCATAAGTCATTTCCGTACTATGACGACTTGGCCATCGTATTCGGCAAAGACAGAGCCACAGGGAGTCATGCAACCACCACTGCAAAGGTTGGATTTGAACCTGTTATGGAAGAGGAAAACGAGGACATCCTGAATAACCAATCCCTAGACTTTGAGAACTTCTATATTCCTGATCCACCTTTTGGCAGCTCGCCCATGTCAGACGACATTCCAACTACCCCCAGCGGTAGAGGGTCTGAGAGTAGCTTGCCATCAAGGAGTAGGAGGTCCCGAATTTCCTCGATTGGAGAGTACAACGAGGTGGTTCGTGAGGGATTCCAACTTCTGACGAAGTCCATTGACGACATTGCACAGTGGCTTGTCATGAACAAGGACCTGGCAAGGCGTCGTTGTCGAGAACTATACGCTGAGCTACAATCCATTCCTGGTCTATCCAATGCTGTTAAGCCACTTTGTGGACTAGCCACCACAATGAAGTACGACTATTTCATGCAAGTCCTCGGGCGACCACAGGATCCAGCACCATGA

Protein sequence

MLGLGYSGFGWNAERKCIDCEAKIFDTCVKSHPSAKELRHKSFPYYDDLAIVFGKDRATGSHATTTAKVGFEPVMEEENEDILNNQSLDFENFYIPDPPFGSSPMSDDIPTTPSGRGSESSLPSRSRRSRISSIGEYNEVVREGFQLLTKSIDDIAQWLVMNKDLARRRCRELYAELQSIPGLSNAVKPLCGLATTMKYDYFMQVLGRPQDPAP

Homology

[Close]

BLAST of ClCG01G011645 vs. NCBI nr
Match: TYK07921.1 (hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 127.5 bits (319), Expect = 1.4e-25
Identity = 70/185 (37.84%), Postives = 105/185 (56.76%), Query Frame = 0


Query: 1   MLGLGYSGFGWNAERKCIDCEAKIFDTCVKSHPSAKELRHKSFPYYDDLAIVFGKDRATG 60
           M+G   SGFGWN  +KCI+ E  +FD  VK HP+A+ L +K FPY+ DL +VFG+DRATG
Sbjct: 192 MMGPACSGFGWNEGQKCIEVEKPVFDDWVKGHPNAQGLLNKPFPYFYDLEVVFGRDRATG 251

Query: 61  SHATTTAKVGFEPVMEEENEDILNNQSLDFENFYIPDPPFGSSPMSDDIPTTPSG--RGS 120
               T  ++  +   + E +D+     ++ E+F IP+P     P  +D+P+TP+     +
Sbjct: 252 GRCKTPVEMSSQTARDTEEDDM----DINLEDFDIPNPHGLEPPSGEDMPSTPTSMTHDA 311

Query: 121 ESSLPSRSRRSRISSIGEYNEVVREGFQLLTKSIDDIAQWLVMNKDLARRRCRELYAELQ 180
            SS PS+ RR   S  G+  +  R   +  +K I  IA W     ++     + LYAELQ
Sbjct: 312 GSSRPSKKRR---SYSGDLMDTFRASMRETSKEIGKIATWQREKMEIESSLHKRLYAELQ 369

Query: 181 SIPGL 184
           +IPG+
Sbjct: 372 TIPGM 369

[Close]

BLAST of ClCG01G011645 vs. NCBI nr
Match: KAA0067273.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 125.2 bits (313), Expect = 6.9e-25
Identity = 69/185 (37.30%), Postives = 105/185 (56.76%), Query Frame = 0


Query: 1   MLGLGYSGFGWNAERKCIDCEAKIFDTCVKSHPSAKELRHKSFPYYDDLAIVFGKDRATG 60
           M+G   S FGWN E+KCI+ +  +FD  VK HP+A+ L +KSFPY+ DL I+FG+DRATG
Sbjct: 1   MMGPACSRFGWNEEQKCIEAQKSVFDDWVKGHPNARGLLNKSFPYFYDLKIMFGRDRATG 60

Query: 61  SHATTTAKVGFEPVMEEENEDILNNQSLDFENFYIPDPPFGSSPMSDDIPTTPSGRGSE- 120
               T  ++G +   + E +D+     ++ E+F IP+P     P  +D+ +TP+    + 
Sbjct: 61  GRCKTPIEMGLQIARDTEEDDM----DINLEDFDIPNPHGLEPPSGEDMSSTPTSMAHDV 120

Query: 121 -SSLPSRSRRSRISSIGEYNEVVREGFQLLTKSIDDIAQWLVMNKDLARRRCRELYAELQ 180
            SS PS+ RRS    +    +  R   +  +K I  IA W     ++     + LYAELQ
Sbjct: 121 GSSKPSKKRRSYSEDL---MDTFRASMRETSKEIRKIAAWQREKMEIESSIHKRLYAELQ 178

Query: 181 SIPGL 184
           +IPG+
Sbjct: 181 TIPGM 178

[Close]

BLAST of ClCG01G011645 vs. NCBI nr
Match: XP_008460440.1 (PREDICTED: uncharacterized protein LOC103499248 [Cucumis melo])

HSP 1 Score: 122.9 bits (307), Expect = 3.4e-24
Identity = 68/184 (36.96%), Postives = 104/184 (56.52%), Query Frame = 0


Query: 2   LGLGYSGFGWNAERKCIDCEAKIFDTCVKSHPSAKELRHKSFPYYDDLAIVFGKDRATGS 61
           +G   S FGWN E+KCI+ +  +FD  VK HP+A+ L +KSFPY+ DL I+FG+DRATG 
Sbjct: 1   MGPACSRFGWNEEQKCIEAQKSVFDDWVKGHPNARGLLNKSFPYFYDLKIMFGRDRATGG 60

Query: 62  HATTTAKVGFEPVMEEENEDILNNQSLDFENFYIPDPPFGSSPMSDDIPTTPSGRGSE-- 121
              T  ++G +   + E +D+     ++ E+F IP+P     P  +D+ +TP+    +  
Sbjct: 61  RCKTPIEMGLQIARDTEEDDM----DINLEDFDIPNPHGLEPPSGEDMSSTPTSMAHDVG 120

Query: 122 SSLPSRSRRSRISSIGEYNEVVREGFQLLTKSIDDIAQWLVMNKDLARRRCRELYAELQS 181
           SS PS+ RRS    +    +  R   +  +K I  IA W     ++     + LYAELQ+
Sbjct: 121 SSKPSKKRRSYSEDL---MDTFRASMRETSKEIRKIAAWQREKMEIESSIHKRLYAELQT 177

Query: 182 IPGL 184
           IPG+
Sbjct: 181 IPGM 177

[Close]

BLAST of ClCG01G011645 vs. NCBI nr
Match: TYK10886.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 122.5 bits (306), Expect = 4.5e-24
Identity = 70/189 (37.04%), Postives = 107/189 (56.61%), Query Frame = 0


Query: 1   MLGLGYSGFGWNAERKCIDCEAKIFDTCVKSHPSAKELRHKSFPYYDDLAIVFGKDRATG 60
           M+G   S FGWN E+KCI+ +  +FD  VK HP+A+ L +KSFPY+ DL I+FG+DRATG
Sbjct: 1   MMGPACSRFGWNEEQKCIEAQKSVFDDWVKGHPNARGLLNKSFPYFYDLKIMFGRDRATG 60

Query: 61  SHATTTAKVGFEPVMEEENEDILNNQSLDFENFYIPDPPFGSSPMSDDIPTTPSGRGSE- 120
               T  ++G +   + E +D+     ++ E+F IP+P     P  +D+ +TP+    + 
Sbjct: 61  GRCKTPVEMGLQIARDTEEDDM----DINLEDFDIPNPHGLEPPSGEDMSSTPTSMAYDV 120

Query: 121 -SSLPSRSRRSRISSIGEYNEVVREGF----QLLTKSIDDIAQWLVMNKDLARRRCRELY 180
            SS PS+ RRS       Y+E + + F    +  +K I  I  W     ++     + LY
Sbjct: 121 GSSRPSKKRRS-------YSEDLMDTFCASMRETSKEIRKITAWQREKMEIESSIHKRLY 178

Query: 181 AELQSIPGL 184
           AELQ+IPG+
Sbjct: 181 AELQTIPGM 178

[Close]

BLAST of ClCG01G011645 vs. NCBI nr
Match: XP_022158565.1 (uncharacterized protein LOC111025018 [Momordica charantia])

HSP 1 Score: 113.6 bits (283), Expect = 2.1e-21
Identity = 65/193 (33.68%), Postives = 105/193 (54.40%), Query Frame = 0


Query: 8   GFGWNAERKCIDCEAKIFDTCVKSHPSAKELRHKSFPYYDDLAIVFGKDRATGSHATTTA 67
           GFGWN + KCI+ E ++FD  VKSHP+AK LR+K  P+YDDL + FGKDRATG++     
Sbjct: 4   GFGWNDDHKCIEAEKEVFDDWVKSHPNAKGLRNKP-PHYDDLTVAFGKDRATGANLDCPV 63

Query: 68  KVGFEPVMEEENEDILNNQSLDFENFYIPDPPFGSS---PMSDDIPTTPSGRGSESSLPS 127
            +            I  +   + ++FYIPDPP  ++    + +D+P TP+ + +  +   
Sbjct: 64  DMA-----SSAAATIAEDAHFEAQDFYIPDPPMFNTTEDAIEEDLPNTPTSKPTIGTSSG 123

Query: 128 RSRRSRISSIGEYNEVVREGFQLLTKSIDDIAQWLVMNKDLARRRCRELYAELQSIPGL- 187
            S+R R     E  +VVR   ++ T  ++ +A W    ++    R + ++ +L+ IP L 
Sbjct: 124 GSKRKRSGYTSEMVDVVRTNMRMQTAHLEKMATWPDKKEEKKIARRKIVHDQLKQIPNLE 183

Query: 188 SNAVKPLCGLATT 197
           +N    L G+  T
Sbjct: 184 ANDYVRLVGILMT 190

[Close]

BLAST of ClCG01G011645 vs. ExPASy TrEMBL
Match: A0A5D3C7T4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00330 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 6.8e-26
Identity = 70/185 (37.84%), Postives = 105/185 (56.76%), Query Frame = 0


Query: 1   MLGLGYSGFGWNAERKCIDCEAKIFDTCVKSHPSAKELRHKSFPYYDDLAIVFGKDRATG 60
           M+G   SGFGWN  +KCI+ E  +FD  VK HP+A+ L +K FPY+ DL +VFG+DRATG
Sbjct: 192 MMGPACSGFGWNEGQKCIEVEKPVFDDWVKGHPNAQGLLNKPFPYFYDLEVVFGRDRATG 251

Query: 61  SHATTTAKVGFEPVMEEENEDILNNQSLDFENFYIPDPPFGSSPMSDDIPTTPSG--RGS 120
               T  ++  +   + E +D+     ++ E+F IP+P     P  +D+P+TP+     +
Sbjct: 252 GRCKTPVEMSSQTARDTEEDDM----DINLEDFDIPNPHGLEPPSGEDMPSTPTSMTHDA 311

Query: 121 ESSLPSRSRRSRISSIGEYNEVVREGFQLLTKSIDDIAQWLVMNKDLARRRCRELYAELQ 180
            SS PS+ RR   S  G+  +  R   +  +K I  IA W     ++     + LYAELQ
Sbjct: 312 GSSRPSKKRR---SYSGDLMDTFRASMRETSKEIGKIATWQREKMEIESSLHKRLYAELQ 369

Query: 181 SIPGL 184
           +IPG+
Sbjct: 372 TIPGM 369

[Close]

BLAST of ClCG01G011645 vs. ExPASy TrEMBL
Match: A0A5A7VGQ0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00930 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 3.4e-25
Identity = 69/185 (37.30%), Postives = 105/185 (56.76%), Query Frame = 0


Query: 1   MLGLGYSGFGWNAERKCIDCEAKIFDTCVKSHPSAKELRHKSFPYYDDLAIVFGKDRATG 60
           M+G   S FGWN E+KCI+ +  +FD  VK HP+A+ L +KSFPY+ DL I+FG+DRATG
Sbjct: 1   MMGPACSRFGWNEEQKCIEAQKSVFDDWVKGHPNARGLLNKSFPYFYDLKIMFGRDRATG 60

Query: 61  SHATTTAKVGFEPVMEEENEDILNNQSLDFENFYIPDPPFGSSPMSDDIPTTPSGRGSE- 120
               T  ++G +   + E +D+     ++ E+F IP+P     P  +D+ +TP+    + 
Sbjct: 61  GRCKTPIEMGLQIARDTEEDDM----DINLEDFDIPNPHGLEPPSGEDMSSTPTSMAHDV 120

Query: 121 -SSLPSRSRRSRISSIGEYNEVVREGFQLLTKSIDDIAQWLVMNKDLARRRCRELYAELQ 180
            SS PS+ RRS    +    +  R   +  +K I  IA W     ++     + LYAELQ
Sbjct: 121 GSSKPSKKRRSYSEDL---MDTFRASMRETSKEIRKIAAWQREKMEIESSIHKRLYAELQ 178

Query: 181 SIPGL 184
           +IPG+
Sbjct: 181 TIPGM 178

[Close]

BLAST of ClCG01G011645 vs. ExPASy TrEMBL
Match: A0A1S3CC17 (uncharacterized protein LOC103499248 OS=Cucumis melo OX=3656 GN=LOC103499248 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.7e-24
Identity = 68/184 (36.96%), Postives = 104/184 (56.52%), Query Frame = 0


Query: 2   LGLGYSGFGWNAERKCIDCEAKIFDTCVKSHPSAKELRHKSFPYYDDLAIVFGKDRATGS 61
           +G   S FGWN E+KCI+ +  +FD  VK HP+A+ L +KSFPY+ DL I+FG+DRATG 
Sbjct: 1   MGPACSRFGWNEEQKCIEAQKSVFDDWVKGHPNARGLLNKSFPYFYDLKIMFGRDRATGG 60

Query: 62  HATTTAKVGFEPVMEEENEDILNNQSLDFENFYIPDPPFGSSPMSDDIPTTPSGRGSE-- 121
              T  ++G +   + E +D+     ++ E+F IP+P     P  +D+ +TP+    +  
Sbjct: 61  RCKTPIEMGLQIARDTEEDDM----DINLEDFDIPNPHGLEPPSGEDMSSTPTSMAHDVG 120

Query: 122 SSLPSRSRRSRISSIGEYNEVVREGFQLLTKSIDDIAQWLVMNKDLARRRCRELYAELQS 181
           SS PS+ RRS    +    +  R   +  +K I  IA W     ++     + LYAELQ+
Sbjct: 121 SSKPSKKRRSYSEDL---MDTFRASMRETSKEIRKIAAWQREKMEIESSIHKRLYAELQT 177

Query: 182 IPGL 184
           IPG+
Sbjct: 181 IPGM 177

[Close]

BLAST of ClCG01G011645 vs. ExPASy TrEMBL
Match: A0A5D3CKC1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00580 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.2e-24
Identity = 70/189 (37.04%), Postives = 107/189 (56.61%), Query Frame = 0


Query: 1   MLGLGYSGFGWNAERKCIDCEAKIFDTCVKSHPSAKELRHKSFPYYDDLAIVFGKDRATG 60
           M+G   S FGWN E+KCI+ +  +FD  VK HP+A+ L +KSFPY+ DL I+FG+DRATG
Sbjct: 1   MMGPACSRFGWNEEQKCIEAQKSVFDDWVKGHPNARGLLNKSFPYFYDLKIMFGRDRATG 60

Query: 61  SHATTTAKVGFEPVMEEENEDILNNQSLDFENFYIPDPPFGSSPMSDDIPTTPSGRGSE- 120
               T  ++G +   + E +D+     ++ E+F IP+P     P  +D+ +TP+    + 
Sbjct: 61  GRCKTPVEMGLQIARDTEEDDM----DINLEDFDIPNPHGLEPPSGEDMSSTPTSMAYDV 120

Query: 121 -SSLPSRSRRSRISSIGEYNEVVREGF----QLLTKSIDDIAQWLVMNKDLARRRCRELY 180
            SS PS+ RRS       Y+E + + F    +  +K I  I  W     ++     + LY
Sbjct: 121 GSSRPSKKRRS-------YSEDLMDTFCASMRETSKEIRKITAWQREKMEIESSIHKRLY 178

Query: 181 AELQSIPGL 184
           AELQ+IPG+
Sbjct: 181 AELQTIPGM 178

[Close]

BLAST of ClCG01G011645 vs. ExPASy TrEMBL
Match: A0A6J1DW73 (uncharacterized protein LOC111025018 OS=Momordica charantia OX=3673 GN=LOC111025018 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.0e-21
Identity = 65/193 (33.68%), Postives = 105/193 (54.40%), Query Frame = 0


Query: 8   GFGWNAERKCIDCEAKIFDTCVKSHPSAKELRHKSFPYYDDLAIVFGKDRATGSHATTTA 67
           GFGWN + KCI+ E ++FD  VKSHP+AK LR+K  P+YDDL + FGKDRATG++     
Sbjct: 4   GFGWNDDHKCIEAEKEVFDDWVKSHPNAKGLRNKP-PHYDDLTVAFGKDRATGANLDCPV 63

Query: 68  KVGFEPVMEEENEDILNNQSLDFENFYIPDPPFGSS---PMSDDIPTTPSGRGSESSLPS 127
            +            I  +   + ++FYIPDPP  ++    + +D+P TP+ + +  +   
Sbjct: 64  DMA-----SSAAATIAEDAHFEAQDFYIPDPPMFNTTEDAIEEDLPNTPTSKPTIGTSSG 123

Query: 128 RSRRSRISSIGEYNEVVREGFQLLTKSIDDIAQWLVMNKDLARRRCRELYAELQSIPGL- 187
            S+R R     E  +VVR   ++ T  ++ +A W    ++    R + ++ +L+ IP L 
Sbjct: 124 GSKRKRSGYTSEMVDVVRTNMRMQTAHLEKMATWPDKKEEKKIARRKIVHDQLKQIPNLE 183

Query: 188 SNAVKPLCGLATT 197
           +N    L G+  T
Sbjct: 184 ANDYVRLVGILMT 190

[Close]

BLAST of ClCG01G011645 vs. TAIR 10
Match: AT5G27260.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 57.8 bits (138), Expect = 1.3e-08
Identity = 47/193 (24.35%), Postives = 79/193 (40.93%), Query Frame = 0


Query: 7   SGFGWNAERKCIDCEAKIFDTCVKSHPSAKELRHKSFPYYDDLAIVFGKDRATGSHATTT 66
           SGFGW+   K      +++   +K+HP+ K+LR+ +F ++D+L I+FG+  ATG +A   
Sbjct: 92  SGFGWDPLTKRFTASDEVWSDYLKAHPNNKQLRYDTFEFFDELQIIFGEGVATGKNAIGL 151

Query: 67  AKVGFEPVMEEENEDILNNQSLDFENFYIPDPPFGSSPMSDDIPTTPSGRGSESSLPSRS 126
                + +     E+       DF+N Y  D            P    G      LP R 
Sbjct: 152 CD-STDGLTYRAGENPRKEYVDDFDNVYEYDTTTHHESSEHYAPFMSHGTSESPKLPPRK 211

Query: 127 RRSRISSIGEYNEVVREGFQLLTKSIDDIAQWLVMNKDLARRRCRELYAELQSIPGLSNA 186
           R     S  +  E       +++  I DI Q         +R  R+     Q    + +A
Sbjct: 212 RTRSERSTSQKEE---SPMMVVSSKILDIIQ---------QREERQQNEVAQKKNNVWDA 271

Query: 187 VKPLCGLATTMKY 200
           +K +  L   ++Y
Sbjct: 272 IKEISDLDECIRY 271

[Close]

BLAST of ClCG01G011645 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 53.5 bits (127), Expect = 2.4e-07
Identity = 23/70 (32.86%), Postives = 40/70 (57.14%), Query Frame = 0


Query: 4   LGYSGFGWNAERKCIDCEAKIFDTCVKSHPSAKELRHKSFPYYDDLAIVFGKDRATGSHA 63
           L  +GF W+A R  +  +  I++T +++HP A+  R K+ P Y +L  +FGK+ + G + 
Sbjct: 396 LEQNGFSWDARRDMVIADDDIWNTYIQAHPEARSYRVKTIPSYPNLCFIFGKETSDGRY- 455

Query: 64  TTTAKVGFEP 74
            T     F+P
Sbjct: 456 -TRLAQAFDP 463

[Close]

BLAST of ClCG01G011645 vs. TAIR 10
Match: AT1G30140.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27260.1); Has 313 Blast hits to 256 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 295; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 50.4 bits (119), Expect = 2.0e-06
Identity = 44/141 (31.21%), Postives = 73/141 (51.77%), Query Frame = 0


Query: 7   SGFGWNAERKCIDCEAKIFDTCVKSHPSAKELRHKSFPYYDDLAIVFGKDRATGSHA--- 66
           SGFGW+ E K      +++   +K+HP+ K ++ +S  +++DL I+FG   ATGS A   
Sbjct: 88  SGFGWDPETKKFTAPDEVWRDYLKAHPNHKHMQTESIDHFEDLQIIFGDVVATGSFAVGM 147

Query: 67  --TTTAKV--------GFEPVMEEENEDILNNQSLDFENFYIPDPPFGSSPMSDDIPTTP 126
             +T  ++        G E V ++EN +    +  +F   +     + +SP + D PTT 
Sbjct: 148 SDSTCPRIYTVGERSQGKETVNQDENIE----EVYEFSFQHPSSAEYSTSPFTFD-PTT- 207

Query: 127 SGRGSESSLP-SRSRRSRISS 134
            GR SE  LP  R++  R +S
Sbjct: 208 RGR-SEKLLPRKRTKGGRCNS 221

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BLAST of ClCG01G011645 vs. TAIR 10
Match: AT2G24960.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 1453 Blast hits to 509 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 39; Plants - 1363; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). )

HSP 1 Score: 47.8 bits (112), Expect = 1.3e-05
Identity = 25/80 (31.25%), Postives = 38/80 (47.50%), Query Frame = 0


Query: 8   GFGWNAERKCIDCEAKIFDTCVKSHPSAKELRHKSFPYYDDLAIVF------GKDRATGS 67
           GF W+  R  I  +  ++D+ +K HP A+  R KS P Y+DL  +F      G D     
Sbjct: 245 GFSWDETRLMISADDAVWDSYIKDHPLARTYRMKSLPSYNDLDTIFACQAEQGTDHRDDG 304

Query: 68  HATTTAKVGFEPVMEEENED 82
            A  T++       +E+N D
Sbjct: 305 SAAQTSET---KASQEQNSD 321

The following BLAST results are available for this feature:

BLAST of ClCG01G011645 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK07921.1	1.4e-25	37.84	hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa]	[more]
KAA0067273.1	6.9e-25	37.30	retrotransposon protein [Cucumis melo var. makuwa]	[more]
XP_008460440.1	3.4e-24	36.96	PREDICTED: uncharacterized protein LOC103499248 [Cucumis melo]	[more]
TYK10886.1	4.5e-24	37.04	retrotransposon protein [Cucumis melo var. makuwa]	[more]
XP_022158565.1	2.1e-21	33.68	uncharacterized protein LOC111025018 [Momordica charantia]	[more]

BLAST of ClCG01G011645 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG01G011645 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C7T4	6.8e-26	37.84	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VGQ0	3.4e-25	37.30	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3CC17	1.7e-24	36.96	uncharacterized protein LOC103499248 OS=Cucumis melo OX=3656 GN=LOC103499248 PE=...	[more]
A0A5D3CKC1	2.2e-24	37.04	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1DW73	1.0e-21	33.68	uncharacterized protein LOC111025018 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]

BLAST of ClCG01G011645 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27260.1	1.3e-08	24.35	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G24960.2	2.4e-07	32.86	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G30140.1	2.0e-06	31.21	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G24960.1	1.3e-05	31.25	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 101..130
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 105..130
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 6..186
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 6..186

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G011645.1	ClCG01G011645.1	mRNA