Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTCAAACGTTTGGTCGTCTAGCACCCACTCAGTGTGTTGACATTGAGGAGATGGTGGCAATGTTCCTCCACATACTGGCTCACGACGTTAAAAACAGAGTTGTTCGACAACAATTTGCACGTTCTGGTGAAACTGTTTCTAGGTATTTCAACGTCGTTCTTACTGCAGAGCTCCACCTTCATGAGGTACTATTGCTCCACCTTTATGAGGTACTATTGAGAAACCAGAGCCGATAAGGAACGATTGTACTAACGAGTGGTGAAAATGGTTTGAGGTATGAAATCGAGTTGATATGCATTCAGGGTCAGTACTAGAATAAGATTTCTTAACTTATTTATGGTGTCTGAAATCGAATAGAATTGTCCTGGTGCATTGGATGACACATACATTAAGGTCAATGTAAATGCAGTAGACCAGCCTCGATACCGTATAAGAAAGGGTGAGATAGCCACGAACGTGCTTGCTATTTGTTCCCCAAATAGAGAGTTCATATTCGTGATGCCAGGGTGGGAAGGGTTTGCAGCCAACTCTAGAGTGCTTAGGGATGCTATTTCATAA
mRNA sequence
ATGGTTCAAACGTTTGGTCGTCTAGCACCCACTCAGTGTGTTGACATTGAGGAGATGGTGGCAATGTTCCTCCACATACTGGCTCACGACGTTAAAAACAGAGTTGTTCGACAACAATTTGCACGTTCTGGTGAAACTGTTTCTAGGTATTTCAACGTCGTTCTTACTGCAGAGCTCCACCTTCATGAGGTACTATTGCTCCACCTTTATGAGAATTGTCCTGGTGCATTGGATGACACATACATTAAGGTCAATGTAAATGCAGTAGACCAGCCTCGATACCGTATAAGAAAGGGTGAGATAGCCACGAACGTGCTTGCTATTTGTTCCCCAAATAGAGAGTTCATATTCGTGATGCCAGGGTGGGAAGGGTTTGCAGCCAACTCTAGAGTGCTTAGGGATGCTATTTCATAA
Coding sequence (CDS)
ATGGTTCAAACGTTTGGTCGTCTAGCACCCACTCAGTGTGTTGACATTGAGGAGATGGTGGCAATGTTCCTCCACATACTGGCTCACGACGTTAAAAACAGAGTTGTTCGACAACAATTTGCACGTTCTGGTGAAACTGTTTCTAGGTATTTCAACGTCGTTCTTACTGCAGAGCTCCACCTTCATGAGGTACTATTGCTCCACCTTTATGAGAATTGTCCTGGTGCATTGGATGACACATACATTAAGGTCAATGTAAATGCAGTAGACCAGCCTCGATACCGTATAAGAAAGGGTGAGATAGCCACGAACGTGCTTGCTATTTGTTCCCCAAATAGAGAGTTCATATTCGTGATGCCAGGGTGGGAAGGGTTTGCAGCCAACTCTAGAGTGCTTAGGGATGCTATTTCATAA
Protein sequence
MVQTFGRLAPTQCVDIEEMVAMFLHILAHDVKNRVVRQQFARSGETVSRYFNVVLTAELHLHEVLLLHLYENCPGALDDTYIKVNVNAVDQPRYRIRKGEIATNVLAICSPNREFIFVMPGWEGFAANSRVLRDAIS
Homology
BLAST of ClCG01G009765 vs. NCBI nr
Match:
XP_038875111.1 (uncharacterized protein LOC120067643 [Benincasa hispida])
HSP 1 Score: 191.4 bits (485), Expect = 5.0e-45
Identity = 99/151 (65.56%), Postives = 113/151 (74.83%), Query Frame = 0
Query: 1 MVQTFGRLAPTQCVDIEEMVAMFLHILAHDVKNRVVRQQFARSGETVSRYFNVVLTAELH 60
M++T R APTQC+D++EMVA+FLHIL HDVKNRVV ++FA SGETVSR+F VLT L
Sbjct: 12 MLRTISRSAPTQCIDMQEMVAIFLHILVHDVKNRVVGRKFAWSGETVSRHFRFVLTVVLQ 71
Query: 61 LHEVLL--------------LHLYENCPGALDDTYIKVNVNAVDQPRYRIRKGEIATNVL 120
LHE+LL +ENC GALDDTYIKVNV+AVD+ YR RKGEIATNVL
Sbjct: 72 LHELLLKKPEPITSDCTDSKWKWFENCLGALDDTYIKVNVSAVDRTHYRTRKGEIATNVL 131
Query: 121 AICSPNREFIFVMPGWEGFAANSRVLRDAIS 138
AICSP EFIFV+P WE ANSRVLRDAIS
Sbjct: 132 AICSPTAEFIFVLPRWERSVANSRVLRDAIS 162
BLAST of ClCG01G009765 vs. NCBI nr
Match:
KAA0050107.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])
HSP 1 Score: 184.5 bits (467), Expect = 6.2e-43
Identity = 94/151 (62.25%), Postives = 112/151 (74.17%), Query Frame = 0
Query: 1 MVQTFGRLAPTQCVDIEEMVAMFLHILAHDVKNRVVRQQFARSGETVSRYFNVVLTAELH 60
M++T G L TQ VD+EEMVA+FLHI+AHDVKNRV R+ FARSGETVSR+FN VL A L
Sbjct: 12 MLRTKGGLEATQYVDVEEMVAIFLHIVAHDVKNRVARRHFARSGETVSRHFNAVLNAVLR 71
Query: 61 LHEVLL--------------LHLYENCPGALDDTYIKVNVNAVDQPRYRIRKGEIATNVL 120
LHE+LL ++NC GAL T+IKVNV+ D+PRYR RKG+I TNVL
Sbjct: 72 LHEILLKQPDPVTHSCSHEKYRWFQNCLGALAGTHIKVNVSMSDRPRYRSRKGDITTNVL 131
Query: 121 AICSPNREFIFVMPGWEGFAANSRVLRDAIS 138
+CS N EFIFVMPGWEG A++SRVLRDA+S
Sbjct: 132 GVCSQNGEFIFVMPGWEGSASDSRVLRDAVS 162
BLAST of ClCG01G009765 vs. NCBI nr
Match:
KAA0031677.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK04433.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])
HSP 1 Score: 179.1 bits (453), Expect = 2.6e-41
Identity = 88/151 (58.28%), Postives = 111/151 (73.51%), Query Frame = 0
Query: 1 MVQTFGRLAPTQCVDIEEMVAMFLHILAHDVKNRVVRQQFARSGETVSRYFNVVLTAELH 60
++ T L + +D+EEMVAMFLHIL HDVKNR++++QF RSGETVSR+FN+VL A L
Sbjct: 12 LLWTTAGLVGIEVIDVEEMVAMFLHILTHDVKNRMIQRQFVRSGETVSRHFNLVLLATLR 71
Query: 61 LHEVLLLHL--------------YENCPGALDDTYIKVNVNAVDQPRYRIRKGEIATNVL 120
LH+ LL L +ENC GALDDTYIKVNV+A D+PRY+ RKGE+ATNVL
Sbjct: 72 LHDELLKKLQPVTNSCTDSRWKWFENCLGALDDTYIKVNVSATDRPRYKTRKGEVATNVL 131
Query: 121 AICSPNREFIFVMPGWEGFAANSRVLRDAIS 138
+C +F+FV+ GWEG AA+SR+LRDAIS
Sbjct: 132 GVCDTKGDFVFVLFGWEGSAADSRILRDAIS 162
BLAST of ClCG01G009765 vs. NCBI nr
Match:
KAA0032395.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 179.1 bits (453), Expect = 2.6e-41
Identity = 83/137 (60.58%), Postives = 108/137 (78.83%), Query Frame = 0
Query: 1 MVQTFGRLAPTQCVDIEEMVAMFLHILAHDVKNRVVRQQFARSGETVSRYFNVVLTAELH 60
+++ L+ T+ VD+EEMVAMFLH+LAHDVKNRV++++F RS ETVSRYFN+VL L
Sbjct: 38 LLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSCETVSRYFNIVLLVVLR 97
Query: 61 LHEVLLLHLYENCPGALDDTYIKVNVNAVDQPRYRIRKGEIATNVLAICSPNREFIFVMP 120
L+E L+ NC GALD TYIK+NV A D+P +R RKGEIATNVL +C NR+F++V+
Sbjct: 98 LYEELIKRHVPNCLGALDGTYIKINVPAGDRPTFRTRKGEIATNVLGVCDTNRDFVYVLA 157
Query: 121 GWEGFAANSRVLRDAIS 138
WEGFAA+SR+LRDA+S
Sbjct: 158 DWEGFAADSRILRDALS 174
BLAST of ClCG01G009765 vs. NCBI nr
Match:
KAA0033290.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK14818.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])
HSP 1 Score: 178.3 bits (451), Expect = 4.4e-41
Identity = 86/151 (56.95%), Postives = 111/151 (73.51%), Query Frame = 0
Query: 1 MVQTFGRLAPTQCVDIEEMVAMFLHILAHDVKNRVVRQQFARSGETVSRYFNVVLTAELH 60
+++T RL T+ +D+EEMVAMFLHILAHD+KNR+++++F RSGETVSR+FN+VL + L
Sbjct: 12 LLRTTARLVGTEVIDVEEMVAMFLHILAHDMKNRIIQREFVRSGETVSRHFNLVLLSVLR 71
Query: 61 LHEVLL--------------LHLYENCPGALDDTYIKVNVNAVDQPRYRIRKGEIATNVL 120
LH LL +ENC GALDDTYIKVNV+A D+PRY RKGE+A NVL
Sbjct: 72 LHNELLKKPQLVTNSCMDPRWKWFENCLGALDDTYIKVNVSATDRPRYSTRKGEVAINVL 131
Query: 121 AICSPNREFIFVMPGWEGFAANSRVLRDAIS 138
+C +F+FV+ GWEG AA+SR+LRDAIS
Sbjct: 132 GVCDTKGDFVFVLSGWEGSAADSRILRDAIS 162
BLAST of ClCG01G009765 vs. ExPASy TrEMBL
Match:
A0A5A7U6W3 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G001210 PE=3 SV=1)
HSP 1 Score: 184.5 bits (467), Expect = 3.0e-43
Identity = 94/151 (62.25%), Postives = 112/151 (74.17%), Query Frame = 0
Query: 1 MVQTFGRLAPTQCVDIEEMVAMFLHILAHDVKNRVVRQQFARSGETVSRYFNVVLTAELH 60
M++T G L TQ VD+EEMVA+FLHI+AHDVKNRV R+ FARSGETVSR+FN VL A L
Sbjct: 12 MLRTKGGLEATQYVDVEEMVAIFLHIVAHDVKNRVARRHFARSGETVSRHFNAVLNAVLR 71
Query: 61 LHEVLL--------------LHLYENCPGALDDTYIKVNVNAVDQPRYRIRKGEIATNVL 120
LHE+LL ++NC GAL T+IKVNV+ D+PRYR RKG+I TNVL
Sbjct: 72 LHEILLKQPDPVTHSCSHEKYRWFQNCLGALAGTHIKVNVSMSDRPRYRSRKGDITTNVL 131
Query: 121 AICSPNREFIFVMPGWEGFAANSRVLRDAIS 138
+CS N EFIFVMPGWEG A++SRVLRDA+S
Sbjct: 132 GVCSQNGEFIFVMPGWEGSASDSRVLRDAVS 162
BLAST of ClCG01G009765 vs. ExPASy TrEMBL
Match:
A0A5D3BXH4 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00290 PE=4 SV=1)
HSP 1 Score: 179.1 bits (453), Expect = 1.3e-41
Identity = 88/151 (58.28%), Postives = 111/151 (73.51%), Query Frame = 0
Query: 1 MVQTFGRLAPTQCVDIEEMVAMFLHILAHDVKNRVVRQQFARSGETVSRYFNVVLTAELH 60
++ T L + +D+EEMVAMFLHIL HDVKNR++++QF RSGETVSR+FN+VL A L
Sbjct: 12 LLWTTAGLVGIEVIDVEEMVAMFLHILTHDVKNRMIQRQFVRSGETVSRHFNLVLLATLR 71
Query: 61 LHEVLLLHL--------------YENCPGALDDTYIKVNVNAVDQPRYRIRKGEIATNVL 120
LH+ LL L +ENC GALDDTYIKVNV+A D+PRY+ RKGE+ATNVL
Sbjct: 72 LHDELLKKLQPVTNSCTDSRWKWFENCLGALDDTYIKVNVSATDRPRYKTRKGEVATNVL 131
Query: 121 AICSPNREFIFVMPGWEGFAANSRVLRDAIS 138
+C +F+FV+ GWEG AA+SR+LRDAIS
Sbjct: 132 GVCDTKGDFVFVLFGWEGSAADSRILRDAIS 162
BLAST of ClCG01G009765 vs. ExPASy TrEMBL
Match:
A0A5A7ST53 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002720 PE=3 SV=1)
HSP 1 Score: 179.1 bits (453), Expect = 1.3e-41
Identity = 83/137 (60.58%), Postives = 108/137 (78.83%), Query Frame = 0
Query: 1 MVQTFGRLAPTQCVDIEEMVAMFLHILAHDVKNRVVRQQFARSGETVSRYFNVVLTAELH 60
+++ L+ T+ VD+EEMVAMFLH+LAHDVKNRV++++F RS ETVSRYFN+VL L
Sbjct: 38 LLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSCETVSRYFNIVLLVVLR 97
Query: 61 LHEVLLLHLYENCPGALDDTYIKVNVNAVDQPRYRIRKGEIATNVLAICSPNREFIFVMP 120
L+E L+ NC GALD TYIK+NV A D+P +R RKGEIATNVL +C NR+F++V+
Sbjct: 98 LYEELIKRHVPNCLGALDGTYIKINVPAGDRPTFRTRKGEIATNVLGVCDTNRDFVYVLA 157
Query: 121 GWEGFAANSRVLRDAIS 138
WEGFAA+SR+LRDA+S
Sbjct: 158 DWEGFAADSRILRDALS 174
BLAST of ClCG01G009765 vs. ExPASy TrEMBL
Match:
A0A5A7SQU2 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold472G00070 PE=3 SV=1)
HSP 1 Score: 178.3 bits (451), Expect = 2.1e-41
Identity = 86/151 (56.95%), Postives = 111/151 (73.51%), Query Frame = 0
Query: 1 MVQTFGRLAPTQCVDIEEMVAMFLHILAHDVKNRVVRQQFARSGETVSRYFNVVLTAELH 60
+++T RL T+ +D+EEMVAMFLHILAHD+KNR+++++F RSGETVSR+FN+VL + L
Sbjct: 12 LLRTTARLVGTEVIDVEEMVAMFLHILAHDMKNRIIQREFVRSGETVSRHFNLVLLSVLR 71
Query: 61 LHEVLL--------------LHLYENCPGALDDTYIKVNVNAVDQPRYRIRKGEIATNVL 120
LH LL +ENC GALDDTYIKVNV+A D+PRY RKGE+A NVL
Sbjct: 72 LHNELLKKPQLVTNSCMDPRWKWFENCLGALDDTYIKVNVSATDRPRYSTRKGEVAINVL 131
Query: 121 AICSPNREFIFVMPGWEGFAANSRVLRDAIS 138
+C +F+FV+ GWEG AA+SR+LRDAIS
Sbjct: 132 GVCDTKGDFVFVLSGWEGSAADSRILRDAIS 162
BLAST of ClCG01G009765 vs. ExPASy TrEMBL
Match:
A0A5A7T1V5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold9475G00150 PE=3 SV=1)
HSP 1 Score: 177.9 bits (450), Expect = 2.8e-41
Identity = 84/137 (61.31%), Postives = 108/137 (78.83%), Query Frame = 0
Query: 1 MVQTFGRLAPTQCVDIEEMVAMFLHILAHDVKNRVVRQQFARSGETVSRYFNVVLTAELH 60
+++ L+ T+ VD+EEMVAMFLH+LAHDVKNRV++++F RSGETVSR+FN+VL A L
Sbjct: 51 LLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLR 110
Query: 61 LHEVLLLHLYENCPGALDDTYIKVNVNAVDQPRYRIRKGEIATNVLAICSPNREFIFVMP 120
L+E L+ NC GALD TYIKVNV A D+P +R RKGEIATNVL +C +F++V+
Sbjct: 111 LYEELMKRPVPNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLA 170
Query: 121 GWEGFAANSRVLRDAIS 138
GWEG AA+SR+LRDAIS
Sbjct: 171 GWEGSAADSRILRDAIS 187
BLAST of ClCG01G009765 vs. TAIR 10
Match:
AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )
HSP 1 Score: 88.6 bits (218), Expect = 4.3e-18
Identity = 50/149 (33.56%), Postives = 82/149 (55.03%), Query Frame = 0
Query: 1 MVQTFGRLAPTQCVDIEEMVAMFLHILAHDVKNRVVRQQFARSGETVSRYFNVVLTAELH 60
++QT G L T + IE +A+FL I+ H+++ R V++ F SGET+SR+FN VL A +
Sbjct: 59 LLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRTRAVQELFCYSGETISRHFNNVLNAVIA 118
Query: 61 LHEVLLL------------HLYENCPGALDDTYIKVNVNAVDQPRYRIRKGEIATNVLAI 120
+ + +++C G +D +I V V +Q +R G + NVLA
Sbjct: 119 ISKDFFQPNSNSDTLENDDPYFKDCVGVVDSFHIPVMVGVDEQGPFRNGNGLLTQNVLAA 178
Query: 121 CSPNREFIFVMPGWEGFAANSRVLRDAIS 138
S + F +V+ GWEG A++ +VL A++
Sbjct: 179 SSFDLRFNYVLAGWEGSASDQQVLNAALT 207
BLAST of ClCG01G009765 vs. TAIR 10
Match:
AT5G28950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 448 Blast hits to 446 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 21; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 73.9 bits (180), Expect = 1.1e-13
Identity = 31/68 (45.59%), Postives = 50/68 (73.53%), Query Frame = 0
Query: 70 YENCPGALDDTYIKVNVNAVDQPRYRIRKGEIATNVLAICSPNREFIFVMPGWEGFAANS 129
+++C GA+DDT+I V+ P +R RKG+I+ N+LA C+ + EF++V+ GWEG A +S
Sbjct: 22 FKDCVGAIDDTHIFAMVSQKKMPSFRNRKGDISQNMLAACNFDVEFMYVLSGWEGSAHDS 81
Query: 130 RVLRDAIS 138
+VL DA++
Sbjct: 82 KVLNDALT 89
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_038875111.1 | 5.0e-45 | 65.56 | uncharacterized protein LOC120067643 [Benincasa hispida] | [more] |
| KAA0050107.1 | 6.2e-43 | 62.25 | putative nuclease HARBI1 [Cucumis melo var. makuwa] | [more] |
| KAA0031677.1 | 2.6e-41 | 58.28 | putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK04433.1 putative nucleas... | [more] |
| KAA0032395.1 | 2.6e-41 | 60.58 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| KAA0033290.1 | 4.4e-41 | 56.95 | putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK14818.1 putative nucleas... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7U6W3 | 3.0e-43 | 62.25 | Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol... | [more] |
| A0A5D3BXH4 | 1.3e-41 | 58.28 | Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... | [more] |
| A0A5A7ST53 | 1.3e-41 | 60.58 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5A7SQU2 | 2.1e-41 | 56.95 | Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... | [more] |
| A0A5A7T1V5 | 2.8e-41 | 61.31 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT5G41980.1 | 4.3e-18 | 33.56 | CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int... | [more] |
| AT5G28950.1 | 1.1e-13 | 45.59 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... | [more] |
