ClCG01G009765 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG01G009765
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRetrotransposon protein
LocationCG_Chr01: 13928641 .. 13929202 (-)
RNA-Seq ExpressionClCG01G009765
SyntenyClCG01G009765
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTCAAACGTTTGGTCGTCTAGCACCCACTCAGTGTGTTGACATTGAGGAGATGGTGGCAATGTTCCTCCACATACTGGCTCACGACGTTAAAAACAGAGTTGTTCGACAACAATTTGCACGTTCTGGTGAAACTGTTTCTAGGTATTTCAACGTCGTTCTTACTGCAGAGCTCCACCTTCATGAGGTACTATTGCTCCACCTTTATGAGGTACTATTGAGAAACCAGAGCCGATAAGGAACGATTGTACTAACGAGTGGTGAAAATGGTTTGAGGTATGAAATCGAGTTGATATGCATTCAGGGTCAGTACTAGAATAAGATTTCTTAACTTATTTATGGTGTCTGAAATCGAATAGAATTGTCCTGGTGCATTGGATGACACATACATTAAGGTCAATGTAAATGCAGTAGACCAGCCTCGATACCGTATAAGAAAGGGTGAGATAGCCACGAACGTGCTTGCTATTTGTTCCCCAAATAGAGAGTTCATATTCGTGATGCCAGGGTGGGAAGGGTTTGCAGCCAACTCTAGAGTGCTTAGGGATGCTATTTCATAA

mRNA sequence

ATGGTTCAAACGTTTGGTCGTCTAGCACCCACTCAGTGTGTTGACATTGAGGAGATGGTGGCAATGTTCCTCCACATACTGGCTCACGACGTTAAAAACAGAGTTGTTCGACAACAATTTGCACGTTCTGGTGAAACTGTTTCTAGGTATTTCAACGTCGTTCTTACTGCAGAGCTCCACCTTCATGAGGTACTATTGCTCCACCTTTATGAGAATTGTCCTGGTGCATTGGATGACACATACATTAAGGTCAATGTAAATGCAGTAGACCAGCCTCGATACCGTATAAGAAAGGGTGAGATAGCCACGAACGTGCTTGCTATTTGTTCCCCAAATAGAGAGTTCATATTCGTGATGCCAGGGTGGGAAGGGTTTGCAGCCAACTCTAGAGTGCTTAGGGATGCTATTTCATAA

Coding sequence (CDS)

ATGGTTCAAACGTTTGGTCGTCTAGCACCCACTCAGTGTGTTGACATTGAGGAGATGGTGGCAATGTTCCTCCACATACTGGCTCACGACGTTAAAAACAGAGTTGTTCGACAACAATTTGCACGTTCTGGTGAAACTGTTTCTAGGTATTTCAACGTCGTTCTTACTGCAGAGCTCCACCTTCATGAGGTACTATTGCTCCACCTTTATGAGAATTGTCCTGGTGCATTGGATGACACATACATTAAGGTCAATGTAAATGCAGTAGACCAGCCTCGATACCGTATAAGAAAGGGTGAGATAGCCACGAACGTGCTTGCTATTTGTTCCCCAAATAGAGAGTTCATATTCGTGATGCCAGGGTGGGAAGGGTTTGCAGCCAACTCTAGAGTGCTTAGGGATGCTATTTCATAA

Protein sequence

MVQTFGRLAPTQCVDIEEMVAMFLHILAHDVKNRVVRQQFARSGETVSRYFNVVLTAELHLHEVLLLHLYENCPGALDDTYIKVNVNAVDQPRYRIRKGEIATNVLAICSPNREFIFVMPGWEGFAANSRVLRDAIS
Homology
BLAST of ClCG01G009765 vs. NCBI nr
Match: XP_038875111.1 (uncharacterized protein LOC120067643 [Benincasa hispida])

HSP 1 Score: 191.4 bits (485), Expect = 5.0e-45
Identity = 99/151 (65.56%), Postives = 113/151 (74.83%), Query Frame = 0

Query: 1   MVQTFGRLAPTQCVDIEEMVAMFLHILAHDVKNRVVRQQFARSGETVSRYFNVVLTAELH 60
           M++T  R APTQC+D++EMVA+FLHIL HDVKNRVV ++FA SGETVSR+F  VLT  L 
Sbjct: 12  MLRTISRSAPTQCIDMQEMVAIFLHILVHDVKNRVVGRKFAWSGETVSRHFRFVLTVVLQ 71

Query: 61  LHEVLL--------------LHLYENCPGALDDTYIKVNVNAVDQPRYRIRKGEIATNVL 120
           LHE+LL                 +ENC GALDDTYIKVNV+AVD+  YR RKGEIATNVL
Sbjct: 72  LHELLLKKPEPITSDCTDSKWKWFENCLGALDDTYIKVNVSAVDRTHYRTRKGEIATNVL 131

Query: 121 AICSPNREFIFVMPGWEGFAANSRVLRDAIS 138
           AICSP  EFIFV+P WE   ANSRVLRDAIS
Sbjct: 132 AICSPTAEFIFVLPRWERSVANSRVLRDAIS 162

BLAST of ClCG01G009765 vs. NCBI nr
Match: KAA0050107.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 184.5 bits (467), Expect = 6.2e-43
Identity = 94/151 (62.25%), Postives = 112/151 (74.17%), Query Frame = 0

Query: 1   MVQTFGRLAPTQCVDIEEMVAMFLHILAHDVKNRVVRQQFARSGETVSRYFNVVLTAELH 60
           M++T G L  TQ VD+EEMVA+FLHI+AHDVKNRV R+ FARSGETVSR+FN VL A L 
Sbjct: 12  MLRTKGGLEATQYVDVEEMVAIFLHIVAHDVKNRVARRHFARSGETVSRHFNAVLNAVLR 71

Query: 61  LHEVLL--------------LHLYENCPGALDDTYIKVNVNAVDQPRYRIRKGEIATNVL 120
           LHE+LL                 ++NC GAL  T+IKVNV+  D+PRYR RKG+I TNVL
Sbjct: 72  LHEILLKQPDPVTHSCSHEKYRWFQNCLGALAGTHIKVNVSMSDRPRYRSRKGDITTNVL 131

Query: 121 AICSPNREFIFVMPGWEGFAANSRVLRDAIS 138
            +CS N EFIFVMPGWEG A++SRVLRDA+S
Sbjct: 132 GVCSQNGEFIFVMPGWEGSASDSRVLRDAVS 162

BLAST of ClCG01G009765 vs. NCBI nr
Match: KAA0031677.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK04433.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 179.1 bits (453), Expect = 2.6e-41
Identity = 88/151 (58.28%), Postives = 111/151 (73.51%), Query Frame = 0

Query: 1   MVQTFGRLAPTQCVDIEEMVAMFLHILAHDVKNRVVRQQFARSGETVSRYFNVVLTAELH 60
           ++ T   L   + +D+EEMVAMFLHIL HDVKNR++++QF RSGETVSR+FN+VL A L 
Sbjct: 12  LLWTTAGLVGIEVIDVEEMVAMFLHILTHDVKNRMIQRQFVRSGETVSRHFNLVLLATLR 71

Query: 61  LHEVLLLHL--------------YENCPGALDDTYIKVNVNAVDQPRYRIRKGEIATNVL 120
           LH+ LL  L              +ENC GALDDTYIKVNV+A D+PRY+ RKGE+ATNVL
Sbjct: 72  LHDELLKKLQPVTNSCTDSRWKWFENCLGALDDTYIKVNVSATDRPRYKTRKGEVATNVL 131

Query: 121 AICSPNREFIFVMPGWEGFAANSRVLRDAIS 138
            +C    +F+FV+ GWEG AA+SR+LRDAIS
Sbjct: 132 GVCDTKGDFVFVLFGWEGSAADSRILRDAIS 162

BLAST of ClCG01G009765 vs. NCBI nr
Match: KAA0032395.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 179.1 bits (453), Expect = 2.6e-41
Identity = 83/137 (60.58%), Postives = 108/137 (78.83%), Query Frame = 0

Query: 1   MVQTFGRLAPTQCVDIEEMVAMFLHILAHDVKNRVVRQQFARSGETVSRYFNVVLTAELH 60
           +++    L+ T+ VD+EEMVAMFLH+LAHDVKNRV++++F RS ETVSRYFN+VL   L 
Sbjct: 38  LLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSCETVSRYFNIVLLVVLR 97

Query: 61  LHEVLLLHLYENCPGALDDTYIKVNVNAVDQPRYRIRKGEIATNVLAICSPNREFIFVMP 120
           L+E L+     NC GALD TYIK+NV A D+P +R RKGEIATNVL +C  NR+F++V+ 
Sbjct: 98  LYEELIKRHVPNCLGALDGTYIKINVPAGDRPTFRTRKGEIATNVLGVCDTNRDFVYVLA 157

Query: 121 GWEGFAANSRVLRDAIS 138
            WEGFAA+SR+LRDA+S
Sbjct: 158 DWEGFAADSRILRDALS 174

BLAST of ClCG01G009765 vs. NCBI nr
Match: KAA0033290.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK14818.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 178.3 bits (451), Expect = 4.4e-41
Identity = 86/151 (56.95%), Postives = 111/151 (73.51%), Query Frame = 0

Query: 1   MVQTFGRLAPTQCVDIEEMVAMFLHILAHDVKNRVVRQQFARSGETVSRYFNVVLTAELH 60
           +++T  RL  T+ +D+EEMVAMFLHILAHD+KNR+++++F RSGETVSR+FN+VL + L 
Sbjct: 12  LLRTTARLVGTEVIDVEEMVAMFLHILAHDMKNRIIQREFVRSGETVSRHFNLVLLSVLR 71

Query: 61  LHEVLL--------------LHLYENCPGALDDTYIKVNVNAVDQPRYRIRKGEIATNVL 120
           LH  LL                 +ENC GALDDTYIKVNV+A D+PRY  RKGE+A NVL
Sbjct: 72  LHNELLKKPQLVTNSCMDPRWKWFENCLGALDDTYIKVNVSATDRPRYSTRKGEVAINVL 131

Query: 121 AICSPNREFIFVMPGWEGFAANSRVLRDAIS 138
            +C    +F+FV+ GWEG AA+SR+LRDAIS
Sbjct: 132 GVCDTKGDFVFVLSGWEGSAADSRILRDAIS 162

BLAST of ClCG01G009765 vs. ExPASy TrEMBL
Match: A0A5A7U6W3 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G001210 PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 3.0e-43
Identity = 94/151 (62.25%), Postives = 112/151 (74.17%), Query Frame = 0

Query: 1   MVQTFGRLAPTQCVDIEEMVAMFLHILAHDVKNRVVRQQFARSGETVSRYFNVVLTAELH 60
           M++T G L  TQ VD+EEMVA+FLHI+AHDVKNRV R+ FARSGETVSR+FN VL A L 
Sbjct: 12  MLRTKGGLEATQYVDVEEMVAIFLHIVAHDVKNRVARRHFARSGETVSRHFNAVLNAVLR 71

Query: 61  LHEVLL--------------LHLYENCPGALDDTYIKVNVNAVDQPRYRIRKGEIATNVL 120
           LHE+LL                 ++NC GAL  T+IKVNV+  D+PRYR RKG+I TNVL
Sbjct: 72  LHEILLKQPDPVTHSCSHEKYRWFQNCLGALAGTHIKVNVSMSDRPRYRSRKGDITTNVL 131

Query: 121 AICSPNREFIFVMPGWEGFAANSRVLRDAIS 138
            +CS N EFIFVMPGWEG A++SRVLRDA+S
Sbjct: 132 GVCSQNGEFIFVMPGWEGSASDSRVLRDAVS 162

BLAST of ClCG01G009765 vs. ExPASy TrEMBL
Match: A0A5D3BXH4 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00290 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.3e-41
Identity = 88/151 (58.28%), Postives = 111/151 (73.51%), Query Frame = 0

Query: 1   MVQTFGRLAPTQCVDIEEMVAMFLHILAHDVKNRVVRQQFARSGETVSRYFNVVLTAELH 60
           ++ T   L   + +D+EEMVAMFLHIL HDVKNR++++QF RSGETVSR+FN+VL A L 
Sbjct: 12  LLWTTAGLVGIEVIDVEEMVAMFLHILTHDVKNRMIQRQFVRSGETVSRHFNLVLLATLR 71

Query: 61  LHEVLLLHL--------------YENCPGALDDTYIKVNVNAVDQPRYRIRKGEIATNVL 120
           LH+ LL  L              +ENC GALDDTYIKVNV+A D+PRY+ RKGE+ATNVL
Sbjct: 72  LHDELLKKLQPVTNSCTDSRWKWFENCLGALDDTYIKVNVSATDRPRYKTRKGEVATNVL 131

Query: 121 AICSPNREFIFVMPGWEGFAANSRVLRDAIS 138
            +C    +F+FV+ GWEG AA+SR+LRDAIS
Sbjct: 132 GVCDTKGDFVFVLFGWEGSAADSRILRDAIS 162

BLAST of ClCG01G009765 vs. ExPASy TrEMBL
Match: A0A5A7ST53 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002720 PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.3e-41
Identity = 83/137 (60.58%), Postives = 108/137 (78.83%), Query Frame = 0

Query: 1   MVQTFGRLAPTQCVDIEEMVAMFLHILAHDVKNRVVRQQFARSGETVSRYFNVVLTAELH 60
           +++    L+ T+ VD+EEMVAMFLH+LAHDVKNRV++++F RS ETVSRYFN+VL   L 
Sbjct: 38  LLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSCETVSRYFNIVLLVVLR 97

Query: 61  LHEVLLLHLYENCPGALDDTYIKVNVNAVDQPRYRIRKGEIATNVLAICSPNREFIFVMP 120
           L+E L+     NC GALD TYIK+NV A D+P +R RKGEIATNVL +C  NR+F++V+ 
Sbjct: 98  LYEELIKRHVPNCLGALDGTYIKINVPAGDRPTFRTRKGEIATNVLGVCDTNRDFVYVLA 157

Query: 121 GWEGFAANSRVLRDAIS 138
            WEGFAA+SR+LRDA+S
Sbjct: 158 DWEGFAADSRILRDALS 174

BLAST of ClCG01G009765 vs. ExPASy TrEMBL
Match: A0A5A7SQU2 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold472G00070 PE=3 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 2.1e-41
Identity = 86/151 (56.95%), Postives = 111/151 (73.51%), Query Frame = 0

Query: 1   MVQTFGRLAPTQCVDIEEMVAMFLHILAHDVKNRVVRQQFARSGETVSRYFNVVLTAELH 60
           +++T  RL  T+ +D+EEMVAMFLHILAHD+KNR+++++F RSGETVSR+FN+VL + L 
Sbjct: 12  LLRTTARLVGTEVIDVEEMVAMFLHILAHDMKNRIIQREFVRSGETVSRHFNLVLLSVLR 71

Query: 61  LHEVLL--------------LHLYENCPGALDDTYIKVNVNAVDQPRYRIRKGEIATNVL 120
           LH  LL                 +ENC GALDDTYIKVNV+A D+PRY  RKGE+A NVL
Sbjct: 72  LHNELLKKPQLVTNSCMDPRWKWFENCLGALDDTYIKVNVSATDRPRYSTRKGEVAINVL 131

Query: 121 AICSPNREFIFVMPGWEGFAANSRVLRDAIS 138
            +C    +F+FV+ GWEG AA+SR+LRDAIS
Sbjct: 132 GVCDTKGDFVFVLSGWEGSAADSRILRDAIS 162

BLAST of ClCG01G009765 vs. ExPASy TrEMBL
Match: A0A5A7T1V5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold9475G00150 PE=3 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.8e-41
Identity = 84/137 (61.31%), Postives = 108/137 (78.83%), Query Frame = 0

Query: 1   MVQTFGRLAPTQCVDIEEMVAMFLHILAHDVKNRVVRQQFARSGETVSRYFNVVLTAELH 60
           +++    L+ T+ VD+EEMVAMFLH+LAHDVKNRV++++F RSGETVSR+FN+VL A L 
Sbjct: 51  LLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLR 110

Query: 61  LHEVLLLHLYENCPGALDDTYIKVNVNAVDQPRYRIRKGEIATNVLAICSPNREFIFVMP 120
           L+E L+     NC GALD TYIKVNV A D+P +R RKGEIATNVL +C    +F++V+ 
Sbjct: 111 LYEELMKRPVPNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLA 170

Query: 121 GWEGFAANSRVLRDAIS 138
           GWEG AA+SR+LRDAIS
Sbjct: 171 GWEGSAADSRILRDAIS 187

BLAST of ClCG01G009765 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 88.6 bits (218), Expect = 4.3e-18
Identity = 50/149 (33.56%), Postives = 82/149 (55.03%), Query Frame = 0

Query: 1   MVQTFGRLAPTQCVDIEEMVAMFLHILAHDVKNRVVRQQFARSGETVSRYFNVVLTAELH 60
           ++QT G L  T  + IE  +A+FL I+ H+++ R V++ F  SGET+SR+FN VL A + 
Sbjct: 59  LLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRTRAVQELFCYSGETISRHFNNVLNAVIA 118

Query: 61  LHEVLLL------------HLYENCPGALDDTYIKVNVNAVDQPRYRIRKGEIATNVLAI 120
           + +                  +++C G +D  +I V V   +Q  +R   G +  NVLA 
Sbjct: 119 ISKDFFQPNSNSDTLENDDPYFKDCVGVVDSFHIPVMVGVDEQGPFRNGNGLLTQNVLAA 178

Query: 121 CSPNREFIFVMPGWEGFAANSRVLRDAIS 138
            S +  F +V+ GWEG A++ +VL  A++
Sbjct: 179 SSFDLRFNYVLAGWEGSASDQQVLNAALT 207

BLAST of ClCG01G009765 vs. TAIR 10
Match: AT5G28950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 448 Blast hits to 446 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 21; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-13
Identity = 31/68 (45.59%), Postives = 50/68 (73.53%), Query Frame = 0

Query: 70  YENCPGALDDTYIKVNVNAVDQPRYRIRKGEIATNVLAICSPNREFIFVMPGWEGFAANS 129
           +++C GA+DDT+I   V+    P +R RKG+I+ N+LA C+ + EF++V+ GWEG A +S
Sbjct: 22  FKDCVGAIDDTHIFAMVSQKKMPSFRNRKGDISQNMLAACNFDVEFMYVLSGWEGSAHDS 81

Query: 130 RVLRDAIS 138
           +VL DA++
Sbjct: 82  KVLNDALT 89

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038875111.15.0e-4565.56uncharacterized protein LOC120067643 [Benincasa hispida][more]
KAA0050107.16.2e-4362.25putative nuclease HARBI1 [Cucumis melo var. makuwa][more]
KAA0031677.12.6e-4158.28putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK04433.1 putative nucleas... [more]
KAA0032395.12.6e-4160.58retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0033290.14.4e-4156.95putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK14818.1 putative nucleas... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7U6W33.0e-4362.25Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol... [more]
A0A5D3BXH41.3e-4158.28Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5A7ST531.3e-4160.58Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7SQU22.1e-4156.95Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5A7T1V52.8e-4161.31Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
AT5G41980.14.3e-1833.56CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int... [more]
AT5G28950.11.1e-1345.59unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR22930:SF216OS11G0577650 PROTEINcoord: 1..137
NoneNo IPR availablePANTHERPTHR22930UNCHARACTERIZEDcoord: 1..137

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G009765.1ClCG01G009765.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding