Chy6G118380 (gene) Cucumber (hystrix) v1

Overview


Name	Chy6G118380
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	60S ribosomal protein L21-1
Location	chrH06: 12350649 .. 12351225 (+)
RNA-Seq Expression	Chy6G118380
Synteny	Chy6G118380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGAACGGCGCCGTCCACAAGGCTATGCCTCATAAATTTTACCACGGTCGCACAGCTCGCGTATGGAATGTTACAAAGCGTGCCATCGGCATCGAGATCAATATATAAGTAGGTTTGGGACTCTTTTTTAAGAACTGTTCATAGTTTTTAGAGTGTATGTAAATCTCGTGATTTAGGGTAATAGATTGTGTTTGATTTTTTAGAATCTTAATTAGTTTTTGGACTCTGTTTTTCTTATTAAACTTTGTTAGTTTGATGGGTTTTGGACTCTGATGAGAGAAAGTTCCATTATGATTTGGAGTCTTTTTCTTATTAAACTTGTGATGAACAAAATTATTAAGAAGAGATTCATGTCGGAGTCAAGCACGTTCAACCTTCTCAATGAATCAAGGAATTTCGCTTGAGGAAGGTGAATAATGATGAGCTGAAGGTCGAAGCTAAGGCCAAAGGCGCAATCATCTGCACCAAGAGGCAACCGGAAGGCCCCAAACCAGGGTTCATGGTTGAAGGTGCTTTAATGGAGATTGTGACTCCCATTCTATACGATGTGGTTAATGATCTCAAGGGTGGCTATTAG

mRNA sequence

GTGAACGGCGCCGTCCACAAGGCTATGCCTCATAAATTTTACCACGGTCGCACAGCTCGCGTGAATAATGATGAGCTGAAGGTCGAAGCTAAGGCCAAAGGCGCAATCATCTGCACCAAGAGGCAACCGGAAGGCCCCAAACCAGGGTTCATGGTTGAAGGTGCTTTAATGGAGATTGTGACTCCCATTCTATACGATGTGGTTAATGATCTCAAGGGTGGCTATTAG

Coding sequence (CDS)

GTGAACGGCGCCGTCCACAAGGCTATGCCTCATAAATTTTACCACGGTCGCACAGCTCGCGTGAATAATGATGAGCTGAAGGTCGAAGCTAAGGCCAAAGGCGCAATCATCTGCACCAAGAGGCAACCGGAAGGCCCCAAACCAGGGTTCATGGTTGAAGGTGCTTTAATGGAGATTGTGACTCCCATTCTATACGATGTGGTTAATGATCTCAAGGGTGGCTATTAG

Protein sequence

VNGAVHKAMPHKFYHGRTARVNNDELKVEAKAKGAIICTKRQPEGPKPGFMVEGALMEIVTPILYDVVNDLKGGY*

Homology

[Close]

BLAST of Chy6G118380 vs. ExPASy Swiss-Prot
Match: Q43291 (60S ribosomal protein L21-1 OS=Arabidopsis thaliana OX=3702 GN=RPL21A PE=2 SV=2)

HSP 1 Score: 107.1 bits (266), Expect = 9.1e-23
Identity = 58/121 (47.93%), Postives = 62/121 (51.24%), Query Frame = 0


Query: 1   VNGAVHKAMPHKFYHGRTARV--------------------------------------- 60
           VNGA+HK MPHKFYHGRT R+                                       
Sbjct: 44  VNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAE 103

Query: 61  -------NNDELKVEAKAKGAIICTKRQPEGPKPGFMVEGALMEIVTPILYDVVNDLKGG 76
                   NDELK  AKA G  I TKRQP+GPKPGFMVEG  +E VTPI YDVVNDLKGG
Sbjct: 104 EFKLRKKKNDELKAAAKANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGG 163

[Close]

BLAST of Chy6G118380 vs. ExPASy Swiss-Prot
Match: Q9FDZ9 (60S ribosomal protein L21-2 OS=Arabidopsis thaliana OX=3702 GN=RPL21E PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.6e-22
Identity = 57/121 (47.11%), Postives = 63/121 (52.07%), Query Frame = 0


Query: 1   VNGAVHKAMPHKFYHGRTARV--------------------------------------- 60
           VNGA+HK MPHKFYHGRT R+                                       
Sbjct: 44  VNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAE 103

Query: 61  -------NNDELKVEAKAKGAIICTKRQPEGPKPGFMVEGALMEIVTPILYDVVNDLKGG 76
                   ND LK +AKA+G  I TKRQP+GPKPGFMVEG  +E VTPI YDVVNDLKGG
Sbjct: 104 EFKLRKKQNDVLKADAKARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGG 163

[Close]

BLAST of Chy6G118380 vs. ExPASy Swiss-Prot
Match: Q54X53 (60S ribosomal protein L21 OS=Dictyostelium discoideum OX=44689 GN=rpl21 PE=3 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 4.2e-04
Identity = 33/114 (28.95%), Postives = 40/114 (35.09%), Query Frame = 0


Query: 3   GAVHKAMPHKFYHGRTARV----------------------------------------- 62
           G VHK MPHKFYHGRT RV                                         
Sbjct: 46  GNVHKGMPHKFYHGRTGRVWNVTPRAVGVIINKRVGPRIIAKKIHVRTEHVKPSNSMAAH 105

Query: 63  -----NNDELKVEAKAKGAIICTKRQPEGPKPGFMVEGALMEI--VTPILYDVV 69
                 N +  VEAK  G  +  +R P  PK GF V     E   V P+ Y+++
Sbjct: 106 LKRIQENKKAVVEAKKAGKWVDVRRNPAAPKDGFFVNPRNTEFVEVKPVKYELL 159

[Close]

BLAST of Chy6G118380 vs. ExPASy TrEMBL
Match: A0A5D3DP20 (60S ribosomal protein L21-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005180 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.0e-25
Identity = 67/121 (55.37%), Postives = 68/121 (56.20%), Query Frame = 0


Query: 1   VNGAVHKAMPHKFYHGRTAR---------------------------------------- 60
           VNGAVHK MPHKFYHGRT R                                        
Sbjct: 44  VNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTE 103

Query: 61  ------VNNDELKVEAKAKGAIICTKRQPEGPKPGFMVEGALMEIVTPILYDVVNDLKGG 76
                 V NDELK EAKAKG +ICTKRQPEGPKPGFMVEGALME VTPI YDVVNDLKGG
Sbjct: 104 EFRLRKVKNDELKAEAKAKGVVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGG 163

[Close]

BLAST of Chy6G118380 vs. ExPASy TrEMBL
Match: A0A1S3B7V0 (60S ribosomal protein L21-1 OS=Cucumis melo OX=3656 GN=LOC103486741 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.0e-25
Identity = 67/121 (55.37%), Postives = 68/121 (56.20%), Query Frame = 0


Query: 1   VNGAVHKAMPHKFYHGRTAR---------------------------------------- 60
           VNGAVHK MPHKFYHGRT R                                        
Sbjct: 44  VNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTE 103

Query: 61  ------VNNDELKVEAKAKGAIICTKRQPEGPKPGFMVEGALMEIVTPILYDVVNDLKGG 76
                 V NDELK EAKAKG +ICTKRQPEGPKPGFMVEGALME VTPI YDVVNDLKGG
Sbjct: 104 EFRLRKVKNDELKAEAKAKGVVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGG 163

[Close]

BLAST of Chy6G118380 vs. ExPASy TrEMBL
Match: A0A0A0LEZ0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G797610 PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.5e-25
Identity = 66/121 (54.55%), Postives = 68/121 (56.20%), Query Frame = 0


Query: 1   VNGAVHKAMPHKFYHGRTA----------------------------------------- 60
           VNGAVHK MPHKFYHGRT                                          
Sbjct: 44  VNGAVHKGMPHKFYHGRTGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTE 103

Query: 61  -----RVNNDELKVEAKAKGAIICTKRQPEGPKPGFMVEGALMEIVTPILYDVVNDLKGG 76
                +V NDELK EAKAKG +ICTKRQPEGPKPGFMVEGALME VTPI YDVVNDLKGG
Sbjct: 104 EFRLRKVKNDELKAEAKAKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGG 163

[Close]

BLAST of Chy6G118380 vs. ExPASy TrEMBL
Match: A0A6J1IYF0 (60S ribosomal protein L21-1 OS=Cucurbita maxima OX=3661 GN=LOC111481773 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 5.9e-25
Identity = 66/121 (54.55%), Postives = 68/121 (56.20%), Query Frame = 0


Query: 1   VNGAVHKAMPHKFYHGRTAR---------------------------------------- 60
           VNGAVHK MPHKFYHGRT R                                        
Sbjct: 44  VNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAE 103

Query: 61  ------VNNDELKVEAKAKGAIICTKRQPEGPKPGFMVEGALMEIVTPILYDVVNDLKGG 76
                 V ND+LK EAKAKG +ICTKRQPEGPKPGFMVEGALME VTPI YDVVNDLKGG
Sbjct: 104 EFRLRKVKNDQLKAEAKAKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGG 163

[Close]

BLAST of Chy6G118380 vs. ExPASy TrEMBL
Match: A0A6J1J6F8 (60S ribosomal protein L21-1-like OS=Cucurbita maxima OX=3661 GN=LOC111481771 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 5.9e-25
Identity = 66/121 (54.55%), Postives = 68/121 (56.20%), Query Frame = 0


Query: 1   VNGAVHKAMPHKFYHGRTAR---------------------------------------- 60
           VNGAVHK MPHKFYHGRT R                                        
Sbjct: 44  VNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAE 103

Query: 61  ------VNNDELKVEAKAKGAIICTKRQPEGPKPGFMVEGALMEIVTPILYDVVNDLKGG 76
                 V ND+LK EAKAKG +ICTKRQPEGPKPGFMVEGALME VTPI YDVVNDLKGG
Sbjct: 104 EFCLRKVKNDQLKAEAKAKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGG 163

[Close]

BLAST of Chy6G118380 vs. NCBI nr
Match: XP_031739289.1 (60S ribosomal protein L21-1 [Cucumis sativus] >XP_031739303.1 60S ribosomal protein L21-1 [Cucumis sativus] >XP_031745254.1 60S ribosomal protein L21-1 [Cucumis sativus] >KAE8651128.1 hypothetical protein Csa_001407 [Cucumis sativus] >KGN43674.2 hypothetical protein Csa_017109 [Cucumis sativus])

HSP 1 Score: 124 bits (312), Expect = 2.75e-34
Identity = 67/121 (55.37%), Postives = 69/121 (57.02%), Query Frame = 0


Query: 1   VNGAVHKAMPHKFYHGRTA----------------------------------------- 60
           VNGAVHK MPHKFYHGRT                                          
Sbjct: 44  VNGAVHKGMPHKFYHGRTGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTE 103

Query: 61  -----RVNNDELKVEAKAKGAIICTKRQPEGPKPGFMVEGALMEIVTPILYDVVNDLKGG 75
                +V NDELK EAKAKGA+ICTKRQPEGPKPGFMVEGALME VTPI YDVVNDLKGG
Sbjct: 104 EFRLRKVKNDELKAEAKAKGAVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGG 163

[Close]

BLAST of Chy6G118380 vs. NCBI nr
Match: XP_008443016.1 (PREDICTED: 60S ribosomal protein L21-1 [Cucumis melo] >KAA0043756.1 60S ribosomal protein L21-1 [Cucumis melo var. makuwa] >TYK25377.1 60S ribosomal protein L21-1 [Cucumis melo var. makuwa])

HSP 1 Score: 124 bits (311), Expect = 3.91e-34
Identity = 67/121 (55.37%), Postives = 68/121 (56.20%), Query Frame = 0


Query: 1   VNGAVHKAMPHKFYHGRTARV--------------------------------------- 60
           VNGAVHK MPHKFYHGRT RV                                       
Sbjct: 44  VNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTE 103

Query: 61  -------NNDELKVEAKAKGAIICTKRQPEGPKPGFMVEGALMEIVTPILYDVVNDLKGG 75
                   NDELK EAKAKG +ICTKRQPEGPKPGFMVEGALME VTPI YDVVNDLKGG
Sbjct: 104 EFRLRKVKNDELKAEAKAKGVVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGG 163

[Close]

BLAST of Chy6G118380 vs. NCBI nr
Match: XP_038906379.1 (60S ribosomal protein L21-1 [Benincasa hispida])

HSP 1 Score: 124 bits (310), Expect = 5.54e-34
Identity = 67/121 (55.37%), Postives = 68/121 (56.20%), Query Frame = 0


Query: 1   VNGAVHKAMPHKFYHGRTARV--------------------------------------- 60
           VNGAVHK MPHKFYHGRT RV                                       
Sbjct: 44  VNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTE 103

Query: 61  -------NNDELKVEAKAKGAIICTKRQPEGPKPGFMVEGALMEIVTPILYDVVNDLKGG 75
                   NDELK EAKAKG +ICTKRQPEGPKPGFMVEGALME VTPI YDVVNDLKGG
Sbjct: 104 EFRLRKVKNDELKAEAKAKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGG 163

[Close]

BLAST of Chy6G118380 vs. NCBI nr
Match: XP_004140433.3 (60S ribosomal protein L21-1 [Cucumis sativus] >XP_031737611.1 60S ribosomal protein L21-1-like [Cucumis sativus])

HSP 1 Score: 123 bits (308), Expect = 1.11e-33
Identity = 66/121 (54.55%), Postives = 68/121 (56.20%), Query Frame = 0


Query: 1   VNGAVHKAMPHKFYHGRTA----------------------------------------- 60
           VNGAVHK MPHKFYHGRT                                          
Sbjct: 44  VNGAVHKGMPHKFYHGRTGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHMQPSRCTE 103

Query: 61  -----RVNNDELKVEAKAKGAIICTKRQPEGPKPGFMVEGALMEIVTPILYDVVNDLKGG 75
                +V NDELK EAKAKG +ICTKRQPEGPKPGFMVEGALME VTPI YDVVNDLKGG
Sbjct: 104 EFRLRKVKNDELKAEAKAKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGG 163

[Close]

BLAST of Chy6G118380 vs. NCBI nr
Match: XP_022983129.1 (60S ribosomal protein L21-1-like [Cucurbita maxima])

HSP 1 Score: 122 bits (307), Expect = 1.58e-33
Identity = 66/121 (54.55%), Postives = 68/121 (56.20%), Query Frame = 0


Query: 1   VNGAVHKAMPHKFYHGRTARV--------------------------------------- 60
           VNGAVHK MPHKFYHGRT RV                                       
Sbjct: 44  VNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAE 103

Query: 61  -------NNDELKVEAKAKGAIICTKRQPEGPKPGFMVEGALMEIVTPILYDVVNDLKGG 75
                   ND+LK EAKAKG +ICTKRQPEGPKPGFMVEGALME VTPI YDVVNDLKGG
Sbjct: 104 EFCLRKVKNDQLKAEAKAKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGG 163

[Close]

BLAST of Chy6G118380 vs. TAIR 10
Match: AT1G09590.1 (Translation protein SH3-like family protein )

HSP 1 Score: 107.1 bits (266), Expect = 6.5e-24
Identity = 58/121 (47.93%), Postives = 62/121 (51.24%), Query Frame = 0


Query: 1   VNGAVHKAMPHKFYHGRTARV--------------------------------------- 60
           VNGA+HK MPHKFYHGRT R+                                       
Sbjct: 44  VNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAE 103

Query: 61  -------NNDELKVEAKAKGAIICTKRQPEGPKPGFMVEGALMEIVTPILYDVVNDLKGG 76
                   NDELK  AKA G  I TKRQP+GPKPGFMVEG  +E VTPI YDVVNDLKGG
Sbjct: 104 EFKLRKKKNDELKAAAKANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGG 163

[Close]

BLAST of Chy6G118380 vs. TAIR 10
Match: AT1G09690.1 (Translation protein SH3-like family protein )

HSP 1 Score: 107.1 bits (266), Expect = 6.5e-24
Identity = 58/121 (47.93%), Postives = 62/121 (51.24%), Query Frame = 0


Query: 1   VNGAVHKAMPHKFYHGRTARV--------------------------------------- 60
           VNGA+HK MPHKFYHGRT R+                                       
Sbjct: 44  VNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAE 103

Query: 61  -------NNDELKVEAKAKGAIICTKRQPEGPKPGFMVEGALMEIVTPILYDVVNDLKGG 76
                   NDELK  AKA G  I TKRQP+GPKPGFMVEG  +E VTPI YDVVNDLKGG
Sbjct: 104 EFKLRKKKNDELKAAAKANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGG 163

[Close]

BLAST of Chy6G118380 vs. TAIR 10
Match: AT1G57660.1 (Translation protein SH3-like family protein )

HSP 1 Score: 106.3 bits (264), Expect = 1.1e-23
Identity = 57/121 (47.11%), Postives = 63/121 (52.07%), Query Frame = 0


Query: 1   VNGAVHKAMPHKFYHGRTARV--------------------------------------- 60
           VNGA+HK MPHKFYHGRT R+                                       
Sbjct: 44  VNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAE 103

Query: 61  -------NNDELKVEAKAKGAIICTKRQPEGPKPGFMVEGALMEIVTPILYDVVNDLKGG 76
                   ND LK +AKA+G  I TKRQP+GPKPGFMVEG  +E VTPI YDVVNDLKGG
Sbjct: 104 EFKLRKKQNDVLKADAKARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGG 163

[Close]

BLAST of Chy6G118380 vs. TAIR 10
Match: AT1G57860.1 (Translation protein SH3-like family protein )

HSP 1 Score: 106.3 bits (264), Expect = 1.1e-23
Identity = 57/121 (47.11%), Postives = 63/121 (52.07%), Query Frame = 0


Query: 1   VNGAVHKAMPHKFYHGRTARV--------------------------------------- 60
           VNGA+HK MPHKFYHGRT R+                                       
Sbjct: 44  VNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAE 103

Query: 61  -------NNDELKVEAKAKGAIICTKRQPEGPKPGFMVEGALMEIVTPILYDVVNDLKGG 76
                   ND LK +AKA+G  I TKRQP+GPKPGFMVEG  +E VTPI YDVVNDLKGG
Sbjct: 104 EFKLRKKQNDVLKADAKARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGG 163

The following BLAST results are available for this feature:

BLAST of Chy6G118380 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q43291	9.1e-23	47.93	60S ribosomal protein L21-1 OS=Arabidopsis thaliana OX=3702 GN=RPL21A PE=2 SV=2	[more]
Q9FDZ9	1.6e-22	47.11	60S ribosomal protein L21-2 OS=Arabidopsis thaliana OX=3702 GN=RPL21E PE=2 SV=1	[more]
Q54X53	4.2e-04	28.95	60S ribosomal protein L21 OS=Dictyostelium discoideum OX=44689 GN=rpl21 PE=3 SV=...	[more]

BLAST of Chy6G118380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DP20	2.0e-25	55.37	60S ribosomal protein L21-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S3B7V0	2.0e-25	55.37	60S ribosomal protein L21-1 OS=Cucumis melo OX=3656 GN=LOC103486741 PE=3 SV=1	[more]
A0A0A0LEZ0	4.5e-25	54.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G797610 PE=3 SV=1	[more]
A0A6J1IYF0	5.9e-25	54.55	60S ribosomal protein L21-1 OS=Cucurbita maxima OX=3661 GN=LOC111481773 PE=3 SV=...	[more]
A0A6J1J6F8	5.9e-25	54.55	60S ribosomal protein L21-1-like OS=Cucurbita maxima OX=3661 GN=LOC111481771 PE=...	[more]

BLAST of Chy6G118380 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031739289.1	2.75e-34	55.37	60S ribosomal protein L21-1 [Cucumis sativus] >XP_031739303.1 60S ribosomal prot...	[more]
XP_008443016.1	3.91e-34	55.37	PREDICTED: 60S ribosomal protein L21-1 [Cucumis melo] >KAA0043756.1 60S ribosoma...	[more]
XP_038906379.1	5.54e-34	55.37	60S ribosomal protein L21-1 [Benincasa hispida]	[more]
XP_004140433.3	1.11e-33	54.55	60S ribosomal protein L21-1 [Cucumis sativus] >XP_031737611.1 60S ribosomal prot...	[more]
XP_022983129.1	1.58e-33	54.55	60S ribosomal protein L21-1-like [Cucurbita maxima]	[more]

BLAST of Chy6G118380 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G09590.1	6.5e-24	47.93	Translation protein SH3-like family protein	[more]
AT1G09690.1	6.5e-24	47.93	Translation protein SH3-like family protein	[more]
AT1G57660.1	1.1e-23	47.11	Translation protein SH3-like family protein	[more]
AT1G57860.1	1.1e-23	47.11	Translation protein SH3-like family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001147	Ribosomal protein L21e	PFAM	PF01157	Ribosomal_L21e	coord: 1..37 e-value: 1.8E-7 score: 30.9
IPR001147	Ribosomal protein L21e	PANTHER	PTHR20981	60S RIBOSOMAL PROTEIN L21	coord: 1..23 coord: 22..75
None	No IPR available	GENE3D	6.10.250.3260		coord: 17..67 e-value: 5.5E-15 score: 57.1
None	No IPR available	PANTHER	PTHR20981:SF20	60S RIBOSOMAL PROTEIN L21-2-LIKE	coord: 1..23 coord: 22..75
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 1..23

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy6G118380.1	Chy6G118380.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome