Chy6G115720 (gene) Cucumber (hystrix) v1

Overview
NameChy6G115720
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionPathogenesis-related homeodomain protein
LocationchrH06: 8371804 .. 8372292 (+)
RNA-Seq ExpressionChy6G115720
SyntenyChy6G115720
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGGGGATTGTTTGAAGGGAGGTAATTATGAGAACAATCCCAATTGTTTGTAGGTCTTTGTGATCATATTGAAATTCTTCCAGATCTAATCCCTCACGCATAAATGCTTAGTCTTAGTTACTTAAATCTAGAGTTTGTTGTTAGATATTTATTTGCATTTTCAAGTGAATGTTCTCATCAGACCCTTCTCTTGATATGTGTTAAACAATCAATACCGACATCCATTTAGTTGGAGAGATCCTTCAGTTAAACAAGCCTTGTCCAGTATGAGGTGATATGAATTTATATCAGCTGGTAGTAGTCCATTTCTTGAATCTTCTGCAGGCCATCTTTGACTTTTGCAAGCCATGCCAACTTGAACGCCCCTGGGAAGGAAGCCAGGCAAATAGATCACTTCGGCCTCAGAAGCGATAGATCACTTATGGAATATGGATGCAACATCGCCCTGAAGTCCTATTCTGTAGTTTATTGTCCTTATCTTTATTGA

mRNA sequence

ATGCGGGGATTGTTTGAAGGGAGGCCATCTTTGACTTTTGCAAGCCATGCCAACTTGAACGCCCCTGGGAAGGAAGCCAGGCAAATAGATCACTTCGGCCTCAGAAGCGATAGATCACTTATGGAATATGGATGCAACATCGCCCTGAAGTCCTATTCTGTAGTTTATTGTCCTTATCTTTATTGA

Coding sequence (CDS)

ATGCGGGGATTGTTTGAAGGGAGGCCATCTTTGACTTTTGCAAGCCATGCCAACTTGAACGCCCCTGGGAAGGAAGCCAGGCAAATAGATCACTTCGGCCTCAGAAGCGATAGATCACTTATGGAATATGGATGCAACATCGCCCTGAAGTCCTATTCTGTAGTTTATTGTCCTTATCTTTATTGA

Protein sequence

MRGLFEGRPSLTFASHANLNAPGKEARQIDHFGLRSDRSLMEYGCNIALKSYSVVYCPYLY*
Homology
[Close]
BLAST of Chy6G115720 vs. ExPASy TrEMBL
Match: A0A5D3CS50 (Pathogenesis-related homeodomain protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G00610 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 6.1e-04
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 0 

Query: 32  FGLRSDRSLMEYGCNIALKSYSVV 56
           FGLRSDRSLMEYGCNIALKSYSVV
Sbjct: 321 FGLRSDRSLMEYGCNIALKSYSVV 344

[Close]
BLAST of Chy6G115720 vs. ExPASy TrEMBL
Match: A0A5A7T752 (Pathogenesis-related homeodomain protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold379G001120 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 6.1e-04
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 0 

Query: 32  FGLRSDRSLMEYGCNIALKSYSVV 56
           FGLRSDRSLMEYGCNIALKSYSVV
Sbjct: 320 FGLRSDRSLMEYGCNIALKSYSVV 343

[Close]
BLAST of Chy6G115720 vs. NCBI nr
Match: KAA0037199.1 (pathogenesis-related homeodomain protein [Cucumis melo var. makuwa])

HSP 1 Score: 52.8 bits (125), Expect = 5.60e-06
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 0 

Query: 32  FGLRSDRSLMEYGCNIALKSYSVV 55
           FGLRSDRSLMEYGCNIALKSYSVV
Sbjct: 320 FGLRSDRSLMEYGCNIALKSYSVV 343

[Close]
BLAST of Chy6G115720 vs. NCBI nr
Match: TYK13874.1 (pathogenesis-related homeodomain protein [Cucumis melo var. makuwa])

HSP 1 Score: 52.8 bits (125), Expect = 5.60e-06
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 0 

Query: 32  FGLRSDRSLMEYGCNIALKSYSVV 55
           FGLRSDRSLMEYGCNIALKSYSVV
Sbjct: 321 FGLRSDRSLMEYGCNIALKSYSVV 344

The following BLAST results are available for this feature:
BLAST of Chy6G115720 vs.
Match NameE-valueIdentityDescription
BLAST of Chy6G115720 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CS506.1e-04100.00Pathogenesis-related homeodomain protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7T7526.1e-04100.00Pathogenesis-related homeodomain protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
BLAST of Chy6G115720 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0037199.15.60e-06100.00pathogenesis-related homeodomain protein [Cucumis melo var. makuwa][more]
TYK13874.15.60e-06100.00pathogenesis-related homeodomain protein [Cucumis melo var. makuwa][more]
BLAST of Chy6G115720 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy6G115720.1Chy6G115720.1mRNA