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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGTGGGAGGTATGGGAAATGAAAATGATTTTAAAGATGAACAAGATATGAGAGAAGATCATAATGGAGAAGATGTTGAAGAATCAAGTTCGAGTTCGTCGTTTCTACCCGATTTGAATCTTCTATTTGTGCTTCTATCATTGATTTCTCCAAATACAAATGAAGATTCAAATGATGGTAATGGGGTATCAATGAGAATGAAAGAGATTGAAGATAGTACAACATATAATATTGCAAAATCAAGCATAAGAAAAAAAGATGTGATTGAAGCCCAACATGAAAGCCGTCGAAAAGTACCTCAAAGACTTCATACAACAATAAAGGATCACAGGTTCTCTATATATCAATTTCTACTGTGTTTGAAATAACTCATAATTTAAAGAAAAAATAGTATAATTATAACTATCATAATCTTTGTGTGATTTCTACAATTTATTCAAAACTGTAAAACTTTTGTTTTTTTTTTTTACAGACATGGAAGAAAAATGTGAATCAATCAATGGAGAAAGATGAATGGATATTAAAAAGAGATGGAAATAACTAA mRNA sequence ATGGTGGGAGGTATGGGAAATGAAAATGATTTTAAAGATGAACAAGATATGAGAGAAGATCATAATGGAGAAGATGTTGAAGAATCAAGTTCGAGTTCGTCGTTTCTACCCGATTTGAATCTTCTATTTGTGCTTCTATCATTGATTTCTCCAAATACAAATGAAGATTCAAATGATGGTAATGGGGTATCAATGAGAATGAAAGAGATTGAAGATAGTACAACATATAATATTGCAAAATCAAGCATAAGAAAAAAAGATGTGATTGAAGCCCAACATGAAAGCCGTCGAAAAACATGGAAGAAAAATGTGAATCAATCAATGGAGAAAGATGAATGGATATTAAAAAGAGATGGAAATAACTAA Coding sequence (CDS) ATGGTGGGAGGTATGGGAAATGAAAATGATTTTAAAGATGAACAAGATATGAGAGAAGATCATAATGGAGAAGATGTTGAAGAATCAAGTTCGAGTTCGTCGTTTCTACCCGATTTGAATCTTCTATTTGTGCTTCTATCATTGATTTCTCCAAATACAAATGAAGATTCAAATGATGGTAATGGGGTATCAATGAGAATGAAAGAGATTGAAGATAGTACAACATATAATATTGCAAAATCAAGCATAAGAAAAAAAGATGTGATTGAAGCCCAACATGAAAGCCGTCGAAAAACATGGAAGAAAAATGTGAATCAATCAATGGAGAAAGATGAATGGATATTAAAAAGAGATGGAAATAACTAA Protein sequence MVGGMGNENDFKDEQDMREDHNGEDVEESSSSSSFLPDLNLLFVLLSLISPNTNEDSNDGNGVSMRMKEIEDSTTYNIAKSSIRKKDVIEAQHESRRKTWKKNVNQSMEKDEWILKRDGNN*
Homology
BLAST of Chy6G106610 vs. ExPASy TrEMBL
Match: A0A0A0L8Q3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G120450 PE=4 SV=1) HSP 1 Score: 169.1 bits (427), Expect = 1.2e-38 Identity = 91/99 (91.92%), Postives = 95/99 (95.96%), Query Frame = 0 Query: 1 MVGGMGNENDFKDEQDMREDH-NGEDVEESSSSSSFLPDLNLLFVLLSLISPNTNEDSND 60 MV GMGNENDFKD+Q+MREDH NGED+ ESSSSSSFLPDLNLLFV LSLISPNTNEDSND Sbjct: 1 MVEGMGNENDFKDKQEMREDHNNGEDIVESSSSSSFLPDLNLLFVFLSLISPNTNEDSND 60
Query: 61 GNGVSMRMKEIEDSTTYNIAKSSIRKKDVIEAQHESRRK 99 GNGVSM+MKEIEDSTTYNIAKSSIRKKDVIEAQHESRRK Sbjct: 61 GNGVSMKMKEIEDSTTYNIAKSSIRKKDVIEAQHESRRK 99
BLAST of Chy6G106610 vs. NCBI nr
Match: KGN56466.1 (hypothetical protein Csa_011060 [Cucumis sativus]) HSP 1 Score: 167 bits (423), Expect = 5.51e-51 Identity = 91/99 (91.92%), Postives = 95/99 (95.96%), Query Frame = 0 Query: 1 MVGGMGNENDFKDEQDMREDHN-GEDVEESSSSSSFLPDLNLLFVLLSLISPNTNEDSND 60 MV GMGNENDFKD+Q+MREDHN GED+ ESSSSSSFLPDLNLLFV LSLISPNTNEDSND Sbjct: 1 MVEGMGNENDFKDKQEMREDHNNGEDIVESSSSSSFLPDLNLLFVFLSLISPNTNEDSND 60
Query: 61 GNGVSMRMKEIEDSTTYNIAKSSIRKKDVIEAQHESRRK 98 GNGVSM+MKEIEDSTTYNIAKSSIRKKDVIEAQHESRRK Sbjct: 61 GNGVSMKMKEIEDSTTYNIAKSSIRKKDVIEAQHESRRK 99
BLAST of Chy6G106610 vs. NCBI nr
Match: KAG6597110.1 (hypothetical protein SDJN03_10290, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 84.3 bits (207), Expect = 3.95e-18 Identity = 53/99 (53.54%), Postives = 69/99 (69.70%), Query Frame = 0 Query: 7 NENDFKDEQDMREDHNGEDVEESSS--------SSSFLPDLNLLFVLLSLISPNTNEDSN 66 NE+D K+EQ+MR+D GE + S SSSFLP++NL+FVLLSL+S +EDSN Sbjct: 8 NESDIKEEQEMRDDSKGEASQNMGSGSGSGLDSSSSFLPEMNLVFVLLSLLS---HEDSN 67
Query: 67 DGNGVSMRMKEIEDSTTYNIAKSSIRKKDVIEAQHESRR 97 G + KE+E TTYNIA+SS++KKDVIEA+ E RR Sbjct: 68 GEEGELTKAKEVEAITTYNIARSSVKKKDVIEAKPERRR 103
BLAST of Chy6G106610 vs. NCBI nr
Match: KAG7028573.1 (hypothetical protein SDJN02_09754, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 79.7 bits (195), Expect = 2.48e-16 Identity = 50/96 (52.08%), Postives = 67/96 (69.79%), Query Frame = 0 Query: 7 NENDFKDEQDMREDHNGEDVEESSS--------SSSFLPDLNLLFVLLSLISPNTNEDSN 66 NE+D K+EQ+MR+D GE + S SSSFLP++NL+FVLLSL+S +E+SN Sbjct: 7 NESDIKEEQEMRDDSKGEASQNMGSGSGSGLDSSSSFLPEMNLVFVLLSLLS---HENSN 66
Query: 67 DGNGVSMRMKEIEDSTTYNIAKSSIRKKDVIEAQHE 94 G + KE+E TTYNIA+SS++KKDVIEA+ E Sbjct: 67 GEEGELTKAKEVEAITTYNIARSSVKKKDVIEAKPE 99
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0L8Q3 | 1.2e-38 | 91.92 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G120450 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
KGN56466.1 | 5.51e-51 | 91.92 | hypothetical protein Csa_011060 [Cucumis sativus] | [more] |
KAG6597110.1 | 3.95e-18 | 53.54 | hypothetical protein SDJN03_10290, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAG7028573.1 | 2.48e-16 | 52.08 | hypothetical protein SDJN02_09754, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
Match Name | E-value | Identity | Description | |
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 9..27 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..34 |
Relationships
The following mRNA feature(s) are a part of this gene:
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