Chy6G106610 (gene) Cucumber (hystrix) v1

Overview
NameChy6G106610
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH06: 869587 .. 870131 (+)
RNA-Seq ExpressionChy6G106610
SyntenyChy6G106610
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGGAGGTATGGGAAATGAAAATGATTTTAAAGATGAACAAGATATGAGAGAAGATCATAATGGAGAAGATGTTGAAGAATCAAGTTCGAGTTCGTCGTTTCTACCCGATTTGAATCTTCTATTTGTGCTTCTATCATTGATTTCTCCAAATACAAATGAAGATTCAAATGATGGTAATGGGGTATCAATGAGAATGAAAGAGATTGAAGATAGTACAACATATAATATTGCAAAATCAAGCATAAGAAAAAAAGATGTGATTGAAGCCCAACATGAAAGCCGTCGAAAAGTACCTCAAAGACTTCATACAACAATAAAGGATCACAGGTTCTCTATATATCAATTTCTACTGTGTTTGAAATAACTCATAATTTAAAGAAAAAATAGTATAATTATAACTATCATAATCTTTGTGTGATTTCTACAATTTATTCAAAACTGTAAAACTTTTGTTTTTTTTTTTTACAGACATGGAAGAAAAATGTGAATCAATCAATGGAGAAAGATGAATGGATATTAAAAAGAGATGGAAATAACTAA

mRNA sequence

ATGGTGGGAGGTATGGGAAATGAAAATGATTTTAAAGATGAACAAGATATGAGAGAAGATCATAATGGAGAAGATGTTGAAGAATCAAGTTCGAGTTCGTCGTTTCTACCCGATTTGAATCTTCTATTTGTGCTTCTATCATTGATTTCTCCAAATACAAATGAAGATTCAAATGATGGTAATGGGGTATCAATGAGAATGAAAGAGATTGAAGATAGTACAACATATAATATTGCAAAATCAAGCATAAGAAAAAAAGATGTGATTGAAGCCCAACATGAAAGCCGTCGAAAAACATGGAAGAAAAATGTGAATCAATCAATGGAGAAAGATGAATGGATATTAAAAAGAGATGGAAATAACTAA

Coding sequence (CDS)

ATGGTGGGAGGTATGGGAAATGAAAATGATTTTAAAGATGAACAAGATATGAGAGAAGATCATAATGGAGAAGATGTTGAAGAATCAAGTTCGAGTTCGTCGTTTCTACCCGATTTGAATCTTCTATTTGTGCTTCTATCATTGATTTCTCCAAATACAAATGAAGATTCAAATGATGGTAATGGGGTATCAATGAGAATGAAAGAGATTGAAGATAGTACAACATATAATATTGCAAAATCAAGCATAAGAAAAAAAGATGTGATTGAAGCCCAACATGAAAGCCGTCGAAAAACATGGAAGAAAAATGTGAATCAATCAATGGAGAAAGATGAATGGATATTAAAAAGAGATGGAAATAACTAA

Protein sequence

MVGGMGNENDFKDEQDMREDHNGEDVEESSSSSSFLPDLNLLFVLLSLISPNTNEDSNDGNGVSMRMKEIEDSTTYNIAKSSIRKKDVIEAQHESRRKTWKKNVNQSMEKDEWILKRDGNN*
Homology
BLAST of Chy6G106610 vs. ExPASy TrEMBL
Match: A0A0A0L8Q3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G120450 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.2e-38
Identity = 91/99 (91.92%), Postives = 95/99 (95.96%), Query Frame = 0

Query: 1  MVGGMGNENDFKDEQDMREDH-NGEDVEESSSSSSFLPDLNLLFVLLSLISPNTNEDSND 60
          MV GMGNENDFKD+Q+MREDH NGED+ ESSSSSSFLPDLNLLFV LSLISPNTNEDSND
Sbjct: 1  MVEGMGNENDFKDKQEMREDHNNGEDIVESSSSSSFLPDLNLLFVFLSLISPNTNEDSND 60

Query: 61 GNGVSMRMKEIEDSTTYNIAKSSIRKKDVIEAQHESRRK 99
          GNGVSM+MKEIEDSTTYNIAKSSIRKKDVIEAQHESRRK
Sbjct: 61 GNGVSMKMKEIEDSTTYNIAKSSIRKKDVIEAQHESRRK 99

BLAST of Chy6G106610 vs. NCBI nr
Match: KGN56466.1 (hypothetical protein Csa_011060 [Cucumis sativus])

HSP 1 Score: 167 bits (423), Expect = 5.51e-51
Identity = 91/99 (91.92%), Postives = 95/99 (95.96%), Query Frame = 0

Query: 1  MVGGMGNENDFKDEQDMREDHN-GEDVEESSSSSSFLPDLNLLFVLLSLISPNTNEDSND 60
          MV GMGNENDFKD+Q+MREDHN GED+ ESSSSSSFLPDLNLLFV LSLISPNTNEDSND
Sbjct: 1  MVEGMGNENDFKDKQEMREDHNNGEDIVESSSSSSFLPDLNLLFVFLSLISPNTNEDSND 60

Query: 61 GNGVSMRMKEIEDSTTYNIAKSSIRKKDVIEAQHESRRK 98
          GNGVSM+MKEIEDSTTYNIAKSSIRKKDVIEAQHESRRK
Sbjct: 61 GNGVSMKMKEIEDSTTYNIAKSSIRKKDVIEAQHESRRK 99

BLAST of Chy6G106610 vs. NCBI nr
Match: KAG6597110.1 (hypothetical protein SDJN03_10290, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 84.3 bits (207), Expect = 3.95e-18
Identity = 53/99 (53.54%), Postives = 69/99 (69.70%), Query Frame = 0

Query: 7   NENDFKDEQDMREDHNGEDVEESSS--------SSSFLPDLNLLFVLLSLISPNTNEDSN 66
           NE+D K+EQ+MR+D  GE  +   S        SSSFLP++NL+FVLLSL+S   +EDSN
Sbjct: 8   NESDIKEEQEMRDDSKGEASQNMGSGSGSGLDSSSSFLPEMNLVFVLLSLLS---HEDSN 67

Query: 67  DGNGVSMRMKEIEDSTTYNIAKSSIRKKDVIEAQHESRR 97
              G   + KE+E  TTYNIA+SS++KKDVIEA+ E RR
Sbjct: 68  GEEGELTKAKEVEAITTYNIARSSVKKKDVIEAKPERRR 103

BLAST of Chy6G106610 vs. NCBI nr
Match: KAG7028573.1 (hypothetical protein SDJN02_09754, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 79.7 bits (195), Expect = 2.48e-16
Identity = 50/96 (52.08%), Postives = 67/96 (69.79%), Query Frame = 0

Query: 7  NENDFKDEQDMREDHNGEDVEESSS--------SSSFLPDLNLLFVLLSLISPNTNEDSN 66
          NE+D K+EQ+MR+D  GE  +   S        SSSFLP++NL+FVLLSL+S   +E+SN
Sbjct: 7  NESDIKEEQEMRDDSKGEASQNMGSGSGSGLDSSSSFLPEMNLVFVLLSLLS---HENSN 66

Query: 67 DGNGVSMRMKEIEDSTTYNIAKSSIRKKDVIEAQHE 94
             G   + KE+E  TTYNIA+SS++KKDVIEA+ E
Sbjct: 67 GEEGELTKAKEVEAITTYNIARSSVKKKDVIEAKPE 99

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L8Q31.2e-3891.92Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G120450 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KGN56466.15.51e-5191.92hypothetical protein Csa_011060 [Cucumis sativus][more]
KAG6597110.13.95e-1853.54hypothetical protein SDJN03_10290, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7028573.12.48e-1652.08hypothetical protein SDJN02_09754, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 9..27
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..34

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy6G106610.1Chy6G106610.1mRNA