Chy5G098550 (gene) Cucumber (hystrix) v1

Overview
NameChy5G098550
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Descriptionsuccinate dehydrogenase assembly factor 2, mitochondrial
LocationchrH05: 11572091 .. 11573202 (+)
RNA-Seq ExpressionChy5G098550
SyntenyChy5G098550
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGACTTTTATAAGGGCTCTAAACAAAGCTCATCAAGTTCTATACTTGAAAGCCTCCCCCACCATTTTGAGAAGCAAATCGATGCCTCTTTTGCCTAGTGCTTTCATTGGGTTGAAGAATCTCCAAAGTGAACTAACAAATCGCAATCAGAATCACCATGGTTGTTTCTTTAGTCTCCATTTCTCTTCGACAAGTACAAATCCTGACATCGATCTCTCAAATGAAGATAGCAAGAGGCAATTATTCAATAGGTTCGTTCTTCCTTCATTTTGTTAATTAATTTTCGCATCCCTCTCGCTCTGTGTTTCTCTCAATTATTGACCCATTTGTTTTGATTGACAAGTTGTTTTGTTTGGTTATTGGACTTAACAGGTTGCTGTACCGGAGCAAACAACGAGGGTTTTTGGAATTGGATTTGATACTTGGGAAATGGGTAGAGGATCACATCCATTCCTTAGATGCAGATGGTATTCGAGCTCTAATTAATGTTCTTGACCTGGTAATTTAGTCTTGAACTGCTGACAGACTTCTGCGACTCACTATTTTTTTCCCCATTTTTGTTATCTTTTCTTCCTTTTTTATCTTTGCTTTTTTCTATTTTCTCTCATTATTGTTATATATATACGGGTGAATATATATATATATATATATTAGAAAAATGTATCTCCAACATGTCGTGTCGTTTTGAAAATTGACATGTTGTCGTTGTGCTGTATTTAATGTCTGTTTCTTAGCTCGCAATTATCCCATAAAAATGAAAAATAGTAGAGATGAAACAAAGACTCAATAATTCTTCTACTCTTGCAGGAAAATCCAGATTTATGGAAGTGGTTAACTGGCCAAGAGCAACCCCCTGAAGCTTTGAAAACAAATCCTGTGAGCATCCAAGCATGGCATTAATTACTGACCCTTTTATCTTGATTAGATATGTGGTTTACAATTAGAGTATTGTATCATTTTAGGTATTTACTGGAGTGAAAGAGAAGGTGATAGACAATCTCAACAAACATGCCTCACCTGAGACAAGAACACCACCTGGCCAACAATGGGTAAGGGGTTGGGATGATTTCAAGAAAGGTCGAGATGGCCCCATAACAGGAAATCAGTAG

mRNA sequence

ATGGCGACTTTTATAAGGGCTCTAAACAAAGCTCATCAAGTTCTATACTTGAAAGCCTCCCCCACCATTTTGAGAAGCAAATCGATGCCTCTTTTGCCTAGTGCTTTCATTGGGTTGAAGAATCTCCAAAGTGAACTAACAAATCGCAATCAGAATCACCATGGTTGTTTCTTTAGTCTCCATTTCTCTTCGACAAGTACAAATCCTGACATCGATCTCTCAAATGAAGATAGCAAGAGGCAATTATTCAATAGGTTGCTGTACCGGAGCAAACAACGAGGGTTTTTGGAATTGGATTTGATACTTGGGAAATGGGTAGAGGATCACATCCATTCCTTAGATGCAGATGGTATTCGAGCTCTAATTAATGTTCTTGACCTGGAAAATCCAGATTTATGGAAGTGGTTAACTGGCCAAGAGCAACCCCCTGAAGCTTTGAAAACAAATCCTGTATTTACTGGAGTGAAAGAGAAGGTGATAGACAATCTCAACAAACATGCCTCACCTGAGACAAGAACACCACCTGGCCAACAATGGGTAAGGGGTTGGGATGATTTCAAGAAAGGTCGAGATGGCCCCATAACAGGAAATCAGTAG

Coding sequence (CDS)

ATGGCGACTTTTATAAGGGCTCTAAACAAAGCTCATCAAGTTCTATACTTGAAAGCCTCCCCCACCATTTTGAGAAGCAAATCGATGCCTCTTTTGCCTAGTGCTTTCATTGGGTTGAAGAATCTCCAAAGTGAACTAACAAATCGCAATCAGAATCACCATGGTTGTTTCTTTAGTCTCCATTTCTCTTCGACAAGTACAAATCCTGACATCGATCTCTCAAATGAAGATAGCAAGAGGCAATTATTCAATAGGTTGCTGTACCGGAGCAAACAACGAGGGTTTTTGGAATTGGATTTGATACTTGGGAAATGGGTAGAGGATCACATCCATTCCTTAGATGCAGATGGTATTCGAGCTCTAATTAATGTTCTTGACCTGGAAAATCCAGATTTATGGAAGTGGTTAACTGGCCAAGAGCAACCCCCTGAAGCTTTGAAAACAAATCCTGTATTTACTGGAGTGAAAGAGAAGGTGATAGACAATCTCAACAAACATGCCTCACCTGAGACAAGAACACCACCTGGCCAACAATGGGTAAGGGGTTGGGATGATTTCAAGAAAGGTCGAGATGGCCCCATAACAGGAAATCAGTAG

Protein sequence

MATFIRALNKAHQVLYLKASPTILRSKSMPLLPSAFIGLKNLQSELTNRNQNHHGCFFSLHFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRALINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWVRGWDDFKKGRDGPITGNQ*
Homology
[Close]
BLAST of Chy5G098550 vs. ExPASy Swiss-Prot
Match: Q9FI44 (Succinate dehydrogenase assembly factor 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SDHAF2 PE=1 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 6.2e-55
Identity = 102/176 (57.95%), Postives = 133/176 (75.57%), Query Frame = 0 

Query: 23  ILRSKSMPLLPSAFIGLKNLQSELTNRNQNHHGCFFSLHFSSTSTNPDIDLSNEDSKRQL 82
           I+RS ++    S      N    +  RN    G  F    ++++ N DIDLSNE++KR+ 
Sbjct: 13  IIRSTAVVGRSSIIPAAANRSYPIIFRNGVDLGARFFCENTASAQNFDIDLSNEENKRRT 72

Query: 83  FNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRALINVLDLENPDLWKWLTGQEQP 142
            NRLLYRSKQRGFLELDL+LG WVE++++S+D +G+++LI+VL+LENPDLWKWLT QEQP
Sbjct: 73  INRLLYRSKQRGFLELDLVLGNWVEENVNSMDENGVKSLIHVLNLENPDLWKWLTEQEQP 132

Query: 143 PEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWVRGWDDFKKGRDGPITGNQ 199
           PEA+ +NPVF+ + EKV+ NLNKHA+PETR   GQ WVRGWDDFK+GRD PI+GNQ
Sbjct: 133 PEAVSSNPVFSALHEKVMKNLNKHAAPETRAAAGQPWVRGWDDFKRGRDAPISGNQ 188

[Close]
BLAST of Chy5G098550 vs. ExPASy Swiss-Prot
Match: P0CR33 (Succinate dehydrogenase assembly factor 2, mitochondrial OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=CNBA4490 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 4.8e-07
Identity = 31/100 (31.00%), Postives = 53/100 (53.00%), Query Frame = 0 

Query: 71  IDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRALINVLDLENP 130
           +D + ED K  L  RL+Y++++RG LE DLIL  +  D + ++D + ++    +LD  + 
Sbjct: 68  LDRTGEDEK-TLRARLIYQTRKRGTLETDLILSTFARDELPNMDFEEMKQFDKLLDEPDW 127

Query: 131 DLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPE 171
           D++ W   +  PP   K  P        +++ L KHA  E
Sbjct: 128 DIFYWSVKKRDPPARWKGTP--------LLEKLQKHAKNE 158

[Close]
BLAST of Chy5G098550 vs. ExPASy Swiss-Prot
Match: P0CR32 (Succinate dehydrogenase assembly factor 2, mitochondrial OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=CNA04680 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 4.8e-07
Identity = 31/100 (31.00%), Postives = 53/100 (53.00%), Query Frame = 0 

Query: 71  IDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRALINVLDLENP 130
           +D + ED K  L  RL+Y++++RG LE DLIL  +  D + ++D + ++    +LD  + 
Sbjct: 68  LDRTGEDEK-TLRARLIYQTRKRGTLETDLILSTFARDELPNMDFEEMKQFDKLLDEPDW 127

Query: 131 DLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPE 171
           D++ W   +  PP   K  P        +++ L KHA  E
Sbjct: 128 DIFYWSVKKRDPPARWKGTP--------LLEKLQKHAKNE 158

[Close]
BLAST of Chy5G098550 vs. ExPASy Swiss-Prot
Match: Q54B20 (Succinate dehydrogenase assembly factor 2, mitochondrial OS=Dictyostelium discoideum OX=44689 GN=DDB_G0293946 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 4.8e-07
Identity = 29/79 (36.71%), Postives = 48/79 (60.76%), Query Frame = 0 

Query: 71  IDLSNEDSK-RQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRALINVLDLEN 130
           I ++NE S+  +L  +LLY+SK+RG LE DL+LG +   +IH L    +R    +L   +
Sbjct: 43  IKINNEISEIEKLRKKLLYQSKERGMLENDLLLGSFATLNIHKLTESQLRDYNLLLQQPD 102

Query: 131 PDLWKWLTGQEQPPEALKT 149
           PD++ W+  + + PE  +T
Sbjct: 103 PDIFNWILKKAEVPEEFET 121

[Close]
BLAST of Chy5G098550 vs. ExPASy Swiss-Prot
Match: Q9NA72 (Succinate dehydrogenase assembly factor 2, mitochondrial OS=Caenorhabditis elegans OX=6239 GN=Y57A10A.29 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.4e-06
Identity = 35/108 (32.41%), Postives = 64/108 (59.26%), Query Frame = 0 

Query: 57  FFSLHFSSTS-TNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDA 116
           FF++  S  S T  ++     D+KR    RLLY+SK+RG LE D++LG + E ++  +  
Sbjct: 9   FFTVSTSLRSLTRAEVPGEKIDAKRA---RLLYQSKKRGILENDILLGDFAEQNLKKMSE 68

Query: 117 DGIRALINVLDLENP--DLWKWLTGQEQPPEALKTNPVFTGVKEKVID 162
             ++A   +++ E+   DL+ +L+ ++ PPE +++  V+  VK+ V D
Sbjct: 69  PELKAYDKLINGEHMEWDLFYYLSNKKSPPEDVESCQVYQKVKKFVDD 113

[Close]
BLAST of Chy5G098550 vs. ExPASy TrEMBL
Match: A0A0A0LKF9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072460 PE=4 SV=1)

HSP 1 Score: 403.7 bits (1036), Expect = 4.5e-109
Identity = 194/198 (97.98%), Postives = 196/198 (98.99%), Query Frame = 0 

Query: 1   MATFIRALNKAHQVLYLKASPTILRSKSMPLLPSAFIGLKNLQSELTNRNQNHHGCFFSL 60
           MATFIRALNKAHQVLYLKASPTILRSKSMPLLP+AFIGLKNLQ ELTNRNQNHHGCF S+
Sbjct: 68  MATFIRALNKAHQVLYLKASPTILRSKSMPLLPTAFIGLKNLQRELTNRNQNHHGCFSSV 127

Query: 61  HFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRA 120
           HFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRA
Sbjct: 128 HFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRA 187

Query: 121 LINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWV 180
           LINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWV
Sbjct: 188 LINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWV 247

Query: 181 RGWDDFKKGRDGPITGNQ 199
           RGWDDFKKGRDGPITGNQ
Sbjct: 248 RGWDDFKKGRDGPITGNQ 265

[Close]
BLAST of Chy5G098550 vs. ExPASy TrEMBL
Match: A0A5D3C9Y9 (Succinate dehydrogenase assembly factor 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G001200 PE=4 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 1.0e-105
Identity = 188/198 (94.95%), Postives = 193/198 (97.47%), Query Frame = 0 

Query: 1   MATFIRALNKAHQVLYLKASPTILRSKSMPLLPSAFIGLKNLQSELTNRNQNHHGCFFSL 60
           MATFIRAL+KAHQVLYLKASPTILRSK MP LPS FIGL+NLQS+LTNRNQNHHGC FSL
Sbjct: 3   MATFIRALSKAHQVLYLKASPTILRSKLMPFLPSVFIGLENLQSQLTNRNQNHHGCSFSL 62

Query: 61  HFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRA 120
           HFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIR 
Sbjct: 63  HFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRD 122

Query: 121 LINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWV 180
           LINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKV++NLNKHASPETRTPPGQQWV
Sbjct: 123 LINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVMNNLNKHASPETRTPPGQQWV 182

Query: 181 RGWDDFKKGRDGPITGNQ 199
           RGWDDFKKGRDGPITGNQ
Sbjct: 183 RGWDDFKKGRDGPITGNQ 200

[Close]
BLAST of Chy5G098550 vs. ExPASy TrEMBL
Match: A0A1S3B413 (succinate dehydrogenase assembly factor 2, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103485912 PE=4 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 1.0e-105
Identity = 188/198 (94.95%), Postives = 193/198 (97.47%), Query Frame = 0 

Query: 1   MATFIRALNKAHQVLYLKASPTILRSKSMPLLPSAFIGLKNLQSELTNRNQNHHGCFFSL 60
           MATFIRAL+KAHQVLYLKASPTILRSK MP LPS FIGL+NLQS+LTNRNQNHHGC FSL
Sbjct: 3   MATFIRALSKAHQVLYLKASPTILRSKLMPFLPSVFIGLENLQSQLTNRNQNHHGCSFSL 62

Query: 61  HFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRA 120
           HFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIR 
Sbjct: 63  HFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRD 122

Query: 121 LINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWV 180
           LINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKV++NLNKHASPETRTPPGQQWV
Sbjct: 123 LINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVMNNLNKHASPETRTPPGQQWV 182

Query: 181 RGWDDFKKGRDGPITGNQ 199
           RGWDDFKKGRDGPITGNQ
Sbjct: 183 RGWDDFKKGRDGPITGNQ 200

[Close]
BLAST of Chy5G098550 vs. ExPASy TrEMBL
Match: A0A6J1JZA0 (succinate dehydrogenase assembly factor 2, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111490192 PE=4 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 1.2e-90
Identity = 166/201 (82.59%), Postives = 180/201 (89.55%), Query Frame = 0 

Query: 1   MATFIRALNKAHQVLYLKASPTILRSKSMPLLPSAFIGLKNLQSELTNRNQNHHGCFFSL 60
           MATF RAL KAH+VLYLK S T+ RSKSMPLLPSA+I L+NLQ  L N NQN HGCFFS 
Sbjct: 1   MATFRRALVKAHEVLYLKPSSTVFRSKSMPLLPSAYILLENLQGRLPNHNQNQHGCFFSF 60

Query: 61  HFSSTSTNP---DIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADG 120
             SSTS NP   DIDLSNE+SKR+LFNRLLYRSKQRGFLELDL+LGKWVEDHI+SLDADG
Sbjct: 61  RCSSTSVNPLFTDIDLSNEESKRRLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADG 120

Query: 121 IRALINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQ 180
           I ALI VLDLENPDLWKWLTGQEQPP+A+KTNPVFT V+EKV++NLNKHASPETRTPPGQ
Sbjct: 121 ISALIKVLDLENPDLWKWLTGQEQPPKAVKTNPVFTDVQEKVMNNLNKHASPETRTPPGQ 180

Query: 181 QWVRGWDDFKKGRDGPITGNQ 199
           QWVRGWDDFK+GRDGPITGNQ
Sbjct: 181 QWVRGWDDFKRGRDGPITGNQ 201

[Close]
BLAST of Chy5G098550 vs. ExPASy TrEMBL
Match: A0A6J1EQG7 (succinate dehydrogenase assembly factor 2, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111436468 PE=4 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 1.6e-90
Identity = 165/201 (82.09%), Postives = 181/201 (90.05%), Query Frame = 0 

Query: 1   MATFIRALNKAHQVLYLKASPTILRSKSMPLLPSAFIGLKNLQSELTNRNQNHHGCFFSL 60
           MATF RA+ KAHQVLYLK S T+ RSKSMPLLP+A+I L+NLQ  L N NQN HGCFFS 
Sbjct: 1   MATFRRAVLKAHQVLYLKPSSTVFRSKSMPLLPTAYILLENLQGRLPNHNQNQHGCFFSF 60

Query: 61  HFSSTSTNP---DIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADG 120
             SST+ NP   DIDLS+E+SKR+LFNRLLYRSKQRGFLELDL+LGKWVEDHI+SLDADG
Sbjct: 61  RCSSTTVNPLFTDIDLSDEESKRRLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADG 120

Query: 121 IRALINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQ 180
           IRALI VLDLENPDLWKWLTGQEQPPEA+KTNPVFT V+EKV++NLNKHASPETRTPPGQ
Sbjct: 121 IRALIKVLDLENPDLWKWLTGQEQPPEAVKTNPVFTDVQEKVMNNLNKHASPETRTPPGQ 180

Query: 181 QWVRGWDDFKKGRDGPITGNQ 199
           QWVRGWDDFK+GRDGPITGNQ
Sbjct: 181 QWVRGWDDFKRGRDGPITGNQ 201

[Close]
BLAST of Chy5G098550 vs. NCBI nr
Match: XP_004152841.1 (succinate dehydrogenase assembly factor 2, mitochondrial [Cucumis sativus] >XP_011648982.1 succinate dehydrogenase assembly factor 2, mitochondrial [Cucumis sativus] >KAE8651700.1 hypothetical protein Csa_006248 [Cucumis sativus])

HSP 1 Score: 405 bits (1042), Expect = 8.47e-143
Identity = 194/198 (97.98%), Postives = 196/198 (98.99%), Query Frame = 0 

Query: 1   MATFIRALNKAHQVLYLKASPTILRSKSMPLLPSAFIGLKNLQSELTNRNQNHHGCFFSL 60
           MATFIRALNKAHQVLYLKASPTILRSKSMPLLP+AFIGLKNLQ ELTNRNQNHHGCF S+
Sbjct: 1   MATFIRALNKAHQVLYLKASPTILRSKSMPLLPTAFIGLKNLQRELTNRNQNHHGCFSSV 60

Query: 61  HFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRA 120
           HFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRA
Sbjct: 61  HFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRA 120

Query: 121 LINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWV 180
           LINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWV
Sbjct: 121 LINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWV 180

Query: 181 RGWDDFKKGRDGPITGNQ 198
           RGWDDFKKGRDGPITGNQ
Sbjct: 181 RGWDDFKKGRDGPITGNQ 198

[Close]
BLAST of Chy5G098550 vs. NCBI nr
Match: XP_008441917.1 (PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Cucumis melo] >KAA0047670.1 succinate dehydrogenase assembly factor 2 [Cucumis melo var. makuwa] >TYK08325.1 succinate dehydrogenase assembly factor 2 [Cucumis melo var. makuwa])

HSP 1 Score: 394 bits (1013), Expect = 2.41e-138
Identity = 188/198 (94.95%), Postives = 193/198 (97.47%), Query Frame = 0 

Query: 1   MATFIRALNKAHQVLYLKASPTILRSKSMPLLPSAFIGLKNLQSELTNRNQNHHGCFFSL 60
           MATFIRAL+KAHQVLYLKASPTILRSK MP LPS FIGL+NLQS+LTNRNQNHHGC FSL
Sbjct: 3   MATFIRALSKAHQVLYLKASPTILRSKLMPFLPSVFIGLENLQSQLTNRNQNHHGCSFSL 62

Query: 61  HFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRA 120
           HFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIR 
Sbjct: 63  HFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRD 122

Query: 121 LINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWV 180
           LINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKV++NLNKHASPETRTPPGQQWV
Sbjct: 123 LINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVMNNLNKHASPETRTPPGQQWV 182

Query: 181 RGWDDFKKGRDGPITGNQ 198
           RGWDDFKKGRDGPITGNQ
Sbjct: 183 RGWDDFKKGRDGPITGNQ 200

[Close]
BLAST of Chy5G098550 vs. NCBI nr
Match: XP_038892622.1 (succinate dehydrogenase assembly factor 2, mitochondrial [Benincasa hispida])

HSP 1 Score: 370 bits (949), Expect = 1.28e-128
Identity = 176/198 (88.89%), Postives = 188/198 (94.95%), Query Frame = 0 

Query: 1   MATFIRALNKAHQVLYLKASPTILRSKSMPLLPSAFIGLKNLQSELTNRNQNHHGCFFSL 60
           MATFIRALNKAHQVLYLKASPTILRSK MPLLPSAFIGL+NLQS+LTN NQNHHGCFF  
Sbjct: 1   MATFIRALNKAHQVLYLKASPTILRSKLMPLLPSAFIGLENLQSQLTNHNQNHHGCFFRF 60

Query: 61  HFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRA 120
            +SSTSTNP IDLSNEDSKR LFNRLLYRSKQRGFLELDL+LGKWVEDHI+SLDADGI+A
Sbjct: 61  CWSSTSTNPHIDLSNEDSKRHLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADGIQA 120

Query: 121 LINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWV 180
           LINVLDLENPDLWKWLTGQEQPPEA+KTNPVF  V+EKV++NLN+ ASPETRTPPGQQWV
Sbjct: 121 LINVLDLENPDLWKWLTGQEQPPEAVKTNPVFISVQEKVMNNLNQLASPETRTPPGQQWV 180

Query: 181 RGWDDFKKGRDGPITGNQ 198
           RGWDDFK+GRDGPITGNQ
Sbjct: 181 RGWDDFKRGRDGPITGNQ 198

[Close]
BLAST of Chy5G098550 vs. NCBI nr
Match: KAG7032455.1 (Succinate dehydrogenase assembly factor 2, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 346 bits (887), Expect = 4.03e-119
Identity = 166/201 (82.59%), Postives = 181/201 (90.05%), Query Frame = 0 

Query: 1   MATFIRALNKAHQVLYLKASPTILRSKSMPLLPSAFIGLKNLQSELTNRNQNHHGCFFSL 60
           MATF RA+ KAHQVLYLK S T+ RSKSMPLLP+A+I L+NLQ  L N NQN HGCFFS 
Sbjct: 1   MATFRRAVVKAHQVLYLKPSSTVFRSKSMPLLPTAYILLENLQGRLPNHNQNQHGCFFSF 60

Query: 61  HFSSTSTNP---DIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADG 120
             SST+ NP   DIDLSNE+SKR+LFNRLLYRSKQRGFLELDL+LGKWVEDHI+SLDADG
Sbjct: 61  RCSSTTVNPLFPDIDLSNEESKRRLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADG 120

Query: 121 IRALINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQ 180
           IRALI VLDLENPDLWKWLTGQEQPPEA+KTNPVFT V+EKV++NLNKHASPETRTPPGQ
Sbjct: 121 IRALIKVLDLENPDLWKWLTGQEQPPEAVKTNPVFTDVQEKVMNNLNKHASPETRTPPGQ 180

Query: 181 QWVRGWDDFKKGRDGPITGNQ 198
           QWVRGWDDFK+GRDGPITGNQ
Sbjct: 181 QWVRGWDDFKRGRDGPITGNQ 201

[Close]
BLAST of Chy5G098550 vs. NCBI nr
Match: XP_022994486.1 (succinate dehydrogenase assembly factor 2, mitochondrial [Cucurbita maxima])

HSP 1 Score: 344 bits (883), Expect = 1.64e-118
Identity = 166/201 (82.59%), Postives = 180/201 (89.55%), Query Frame = 0 

Query: 1   MATFIRALNKAHQVLYLKASPTILRSKSMPLLPSAFIGLKNLQSELTNRNQNHHGCFFSL 60
           MATF RAL KAH+VLYLK S T+ RSKSMPLLPSA+I L+NLQ  L N NQN HGCFFS 
Sbjct: 1   MATFRRALVKAHEVLYLKPSSTVFRSKSMPLLPSAYILLENLQGRLPNHNQNQHGCFFSF 60

Query: 61  HFSSTSTNP---DIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADG 120
             SSTS NP   DIDLSNE+SKR+LFNRLLYRSKQRGFLELDL+LGKWVEDHI+SLDADG
Sbjct: 61  RCSSTSVNPLFTDIDLSNEESKRRLFNRLLYRSKQRGFLELDLVLGKWVEDHINSLDADG 120

Query: 121 IRALINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQ 180
           I ALI VLDLENPDLWKWLTGQEQPP+A+KTNPVFT V+EKV++NLNKHASPETRTPPGQ
Sbjct: 121 ISALIKVLDLENPDLWKWLTGQEQPPKAVKTNPVFTDVQEKVMNNLNKHASPETRTPPGQ 180

Query: 181 QWVRGWDDFKKGRDGPITGNQ 198
           QWVRGWDDFK+GRDGPITGNQ
Sbjct: 181 QWVRGWDDFKRGRDGPITGNQ 201

[Close]
BLAST of Chy5G098550 vs. TAIR 10
Match: AT5G51040.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF339 (InterPro:IPR005631); Has 532 Blast hits to 532 proteins in 207 species: Archae - 0; Bacteria - 285; Metazoa - 16; Fungi - 41; Plants - 40; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink). )

HSP 1 Score: 215.3 bits (547), Expect = 4.4e-56
Identity = 102/176 (57.95%), Postives = 133/176 (75.57%), Query Frame = 0 

Query: 23  ILRSKSMPLLPSAFIGLKNLQSELTNRNQNHHGCFFSLHFSSTSTNPDIDLSNEDSKRQL 82
           I+RS ++    S      N    +  RN    G  F    ++++ N DIDLSNE++KR+ 
Sbjct: 13  IIRSTAVVGRSSIIPAAANRSYPIIFRNGVDLGARFFCENTASAQNFDIDLSNEENKRRT 72

Query: 83  FNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRALINVLDLENPDLWKWLTGQEQP 142
            NRLLYRSKQRGFLELDL+LG WVE++++S+D +G+++LI+VL+LENPDLWKWLT QEQP
Sbjct: 73  INRLLYRSKQRGFLELDLVLGNWVEENVNSMDENGVKSLIHVLNLENPDLWKWLTEQEQP 132

Query: 143 PEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWVRGWDDFKKGRDGPITGNQ 199
           PEA+ +NPVF+ + EKV+ NLNKHA+PETR   GQ WVRGWDDFK+GRD PI+GNQ
Sbjct: 133 PEAVSSNPVFSALHEKVMKNLNKHAAPETRAAAGQPWVRGWDDFKRGRDAPISGNQ 188

[Close]
BLAST of Chy5G098550 vs. TAIR 10
Match: AT5G51040.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF339 (InterPro:IPR005631). )

HSP 1 Score: 207.6 bits (527), Expect = 9.2e-54
Identity = 102/185 (55.14%), Postives = 133/185 (71.89%), Query Frame = 0 

Query: 23  ILRSKSMPLLPSAFIGLKNLQSELTNRNQNHHGCFFSLHFSSTSTNPDIDLSNEDSKRQL 82
           I+RS ++    S      N    +  RN    G  F    ++++ N DIDLSNE++KR+ 
Sbjct: 13  IIRSTAVVGRSSIIPAAANRSYPIIFRNGVDLGARFFCENTASAQNFDIDLSNEENKRRT 72

Query: 83  FNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRALINVLD---------LENPDLW 142
            NRLLYRSKQRGFLELDL+LG WVE++++S+D +G+++LI+VL+         LENPDLW
Sbjct: 73  INRLLYRSKQRGFLELDLVLGNWVEENVNSMDENGVKSLIHVLNLVESEATKLLENPDLW 132

Query: 143 KWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWVRGWDDFKKGRDGP 199
           KWLT QEQPPEA+ +NPVF+ + EKV+ NLNKHA+PETR   GQ WVRGWDDFK+GRD P
Sbjct: 133 KWLTEQEQPPEAVSSNPVFSALHEKVMKNLNKHAAPETRAAAGQPWVRGWDDFKRGRDAP 192

[Close]
BLAST of Chy5G098550 vs. TAIR 10
Match: AT5G51040.2 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF339 (InterPro:IPR005631); Has 368 Blast hits to 368 proteins in 141 species: Archae - 0; Bacteria - 216; Metazoa - 8; Fungi - 13; Plants - 40; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink). )

HSP 1 Score: 201.8 bits (512), Expect = 5.0e-52
Identity = 98/176 (55.68%), Postives = 129/176 (73.30%), Query Frame = 0 

Query: 23  ILRSKSMPLLPSAFIGLKNLQSELTNRNQNHHGCFFSLHFSSTSTNPDIDLSNEDSKRQL 82
           I+RS ++    S      N    +  RN    G  F    ++++ N DIDLSNE++KR+ 
Sbjct: 13  IIRSTAVVGRSSIIPAAANRSYPIIFRNGVDLGARFFCENTASAQNFDIDLSNEENKRRT 72

Query: 83  FNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRALINVLDLENPDLWKWLTGQEQP 142
            N    RSKQRGFLELDL+LG WVE++++S+D +G+++LI+VL+LENPDLWKWLT QEQP
Sbjct: 73  IN----RSKQRGFLELDLVLGNWVEENVNSMDENGVKSLIHVLNLENPDLWKWLTEQEQP 132

Query: 143 PEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWVRGWDDFKKGRDGPITGNQ 199
           PEA+ +NPVF+ + EKV+ NLNKHA+PETR   GQ WVRGWDDFK+GRD PI+GNQ
Sbjct: 133 PEAVSSNPVFSALHEKVMKNLNKHAAPETRAAAGQPWVRGWDDFKRGRDAPISGNQ 184

The following BLAST results are available for this feature:
BLAST of Chy5G098550 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FI446.2e-5557.95Succinate dehydrogenase assembly factor 2, mitochondrial OS=Arabidopsis thaliana... [more]
P0CR334.8e-0731.00Succinate dehydrogenase assembly factor 2, mitochondrial OS=Cryptococcus neoform... [more]
P0CR324.8e-0731.00Succinate dehydrogenase assembly factor 2, mitochondrial OS=Cryptococcus neoform... [more]
Q54B204.8e-0736.71Succinate dehydrogenase assembly factor 2, mitochondrial OS=Dictyostelium discoi... [more]
Q9NA721.4e-0632.41Succinate dehydrogenase assembly factor 2, mitochondrial OS=Caenorhabditis elega... [more]
BLAST of Chy5G098550 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LKF94.5e-10997.98Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072460 PE=4 SV=1[more]
A0A5D3C9Y91.0e-10594.95Succinate dehydrogenase assembly factor 2 OS=Cucumis melo var. makuwa OX=1194695... [more]
A0A1S3B4131.0e-10594.95succinate dehydrogenase assembly factor 2, mitochondrial OS=Cucumis melo OX=3656... [more]
A0A6J1JZA01.2e-9082.59succinate dehydrogenase assembly factor 2, mitochondrial OS=Cucurbita maxima OX=... [more]
A0A6J1EQG71.6e-9082.09succinate dehydrogenase assembly factor 2, mitochondrial OS=Cucurbita moschata O... [more]
BLAST of Chy5G098550 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004152841.18.47e-14397.98succinate dehydrogenase assembly factor 2, mitochondrial [Cucumis sativus] >XP_0... [more]
XP_008441917.12.41e-13894.95PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Cucumis mel... [more]
XP_038892622.11.28e-12888.89succinate dehydrogenase assembly factor 2, mitochondrial [Benincasa hispida][more]
KAG7032455.14.03e-11982.59Succinate dehydrogenase assembly factor 2, mitochondrial [Cucurbita argyrosperma... [more]
XP_022994486.11.64e-11882.59succinate dehydrogenase assembly factor 2, mitochondrial [Cucurbita maxima][more]
BLAST of Chy5G098550 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G51040.14.4e-5657.95unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF339 ... [more]
AT5G51040.39.2e-5455.14unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G51040.25.0e-5255.68unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF339 ... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036714Flavinator of succinate dehydrogenase superfamilyGENE3D1.10.150.250Flavinator of succinate dehydrogenasecoord: 67..165
e-value: 1.0E-21
score: 78.3
IPR036714Flavinator of succinate dehydrogenase superfamilySUPERFAMILY109910YgfY-likecoord: 84..149
IPR005631Flavinator of succinate dehydrogenasePFAMPF03937Sdh5coord: 84..152
e-value: 6.6E-22
score: 77.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 166..198
NoneNo IPR availablePANTHERPTHR12469:SF5FLAVINATOR OF SUCCINATE DEHYDROGENASEcoord: 52..198
NoneNo IPR availablePANTHERPTHR12469PROTEIN EMI5 HOMOLOG, MITOCHONDRIALcoord: 52..198

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy5G098550.1Chy5G098550.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006121 mitochondrial electron transport, succinate to ubiquinone
biological_process GO:0034553 mitochondrial respiratory chain complex II assembly
biological_process GO:0018293 protein-FAD linkage
biological_process GO:0006099 tricarboxylic acid cycle
cellular_component GO:0005739 mitochondrion