Chy5G098550 (gene) Cucumber (hystrix) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGACTTTTATAAGGGCTCTAAACAAAGCTCATCAAGTTCTATACTTGAAAGCCTCCCCCACCATTTTGAGAAGCAAATCGATGCCTCTTTTGCCTAGTGCTTTCATTGGGTTGAAGAATCTCCAAAGTGAACTAACAAATCGCAATCAGAATCACCATGGTTGTTTCTTTAGTCTCCATTTCTCTTCGACAAGTACAAATCCTGACATCGATCTCTCAAATGAAGATAGCAAGAGGCAATTATTCAATAGGTTCGTTCTTCCTTCATTTTGTTAATTAATTTTCGCATCCCTCTCGCTCTGTGTTTCTCTCAATTATTGACCCATTTGTTTTGATTGACAAGTTGTTTTGTTTGGTTATTGGACTTAACAGGTTGCTGTACCGGAGCAAACAACGAGGGTTTTTGGAATTGGATTTGATACTTGGGAAATGGGTAGAGGATCACATCCATTCCTTAGATGCAGATGGTATTCGAGCTCTAATTAATGTTCTTGACCTGGTAATTTAGTCTTGAACTGCTGACAGACTTCTGCGACTCACTATTTTTTTCCCCATTTTTGTTATCTTTTCTTCCTTTTTTATCTTTGCTTTTTTCTATTTTCTCTCATTATTGTTATATATATACGGGTGAATATATATATATATATATATTAGAAAAATGTATCTCCAACATGTCGTGTCGTTTTGAAAATTGACATGTTGTCGTTGTGCTGTATTTAATGTCTGTTTCTTAGCTCGCAATTATCCCATAAAAATGAAAAATAGTAGAGATGAAACAAAGACTCAATAATTCTTCTACTCTTGCAGGAAAATCCAGATTTATGGAAGTGGTTAACTGGCCAAGAGCAACCCCCTGAAGCTTTGAAAACAAATCCTGTGAGCATCCAAGCATGGCATTAATTACTGACCCTTTTATCTTGATTAGATATGTGGTTTACAATTAGAGTATTGTATCATTTTAGGTATTTACTGGAGTGAAAGAGAAGGTGATAGACAATCTCAACAAACATGCCTCACCTGAGACAAGAACACCACCTGGCCAACAATGGGTAAGGGGTTGGGATGATTTCAAGAAAGGTCGAGATGGCCCCATAACAGGAAATCAGTAG ATGGCGACTTTTATAAGGGCTCTAAACAAAGCTCATCAAGTTCTATACTTGAAAGCCTCCCCCACCATTTTGAGAAGCAAATCGATGCCTCTTTTGCCTAGTGCTTTCATTGGGTTGAAGAATCTCCAAAGTGAACTAACAAATCGCAATCAGAATCACCATGGTTGTTTCTTTAGTCTCCATTTCTCTTCGACAAGTACAAATCCTGACATCGATCTCTCAAATGAAGATAGCAAGAGGCAATTATTCAATAGGTTGCTGTACCGGAGCAAACAACGAGGGTTTTTGGAATTGGATTTGATACTTGGGAAATGGGTAGAGGATCACATCCATTCCTTAGATGCAGATGGTATTCGAGCTCTAATTAATGTTCTTGACCTGGAAAATCCAGATTTATGGAAGTGGTTAACTGGCCAAGAGCAACCCCCTGAAGCTTTGAAAACAAATCCTGTATTTACTGGAGTGAAAGAGAAGGTGATAGACAATCTCAACAAACATGCCTCACCTGAGACAAGAACACCACCTGGCCAACAATGGGTAAGGGGTTGGGATGATTTCAAGAAAGGTCGAGATGGCCCCATAACAGGAAATCAGTAG ATGGCGACTTTTATAAGGGCTCTAAACAAAGCTCATCAAGTTCTATACTTGAAAGCCTCCCCCACCATTTTGAGAAGCAAATCGATGCCTCTTTTGCCTAGTGCTTTCATTGGGTTGAAGAATCTCCAAAGTGAACTAACAAATCGCAATCAGAATCACCATGGTTGTTTCTTTAGTCTCCATTTCTCTTCGACAAGTACAAATCCTGACATCGATCTCTCAAATGAAGATAGCAAGAGGCAATTATTCAATAGGTTGCTGTACCGGAGCAAACAACGAGGGTTTTTGGAATTGGATTTGATACTTGGGAAATGGGTAGAGGATCACATCCATTCCTTAGATGCAGATGGTATTCGAGCTCTAATTAATGTTCTTGACCTGGAAAATCCAGATTTATGGAAGTGGTTAACTGGCCAAGAGCAACCCCCTGAAGCTTTGAAAACAAATCCTGTATTTACTGGAGTGAAAGAGAAGGTGATAGACAATCTCAACAAACATGCCTCACCTGAGACAAGAACACCACCTGGCCAACAATGGGTAAGGGGTTGGGATGATTTCAAGAAAGGTCGAGATGGCCCCATAACAGGAAATCAGTAG MATFIRALNKAHQVLYLKASPTILRSKSMPLLPSAFIGLKNLQSELTNRNQNHHGCFFSLHFSSTSTNPDIDLSNEDSKRQLFNRLLYRSKQRGFLELDLILGKWVEDHIHSLDADGIRALINVLDLENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWVRGWDDFKKGRDGPITGNQ* Homology
BLAST of Chy5G098550 vs. ExPASy Swiss-Prot
Match: Q9FI44 (Succinate dehydrogenase assembly factor 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SDHAF2 PE=1 SV=1) HSP 1 Score: 215.3 bits (547), Expect = 6.2e-55 Identity = 102/176 (57.95%), Postives = 133/176 (75.57%), Query Frame = 0
BLAST of Chy5G098550 vs. ExPASy Swiss-Prot
Match: P0CR33 (Succinate dehydrogenase assembly factor 2, mitochondrial OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=CNBA4490 PE=3 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 4.8e-07 Identity = 31/100 (31.00%), Postives = 53/100 (53.00%), Query Frame = 0
BLAST of Chy5G098550 vs. ExPASy Swiss-Prot
Match: P0CR32 (Succinate dehydrogenase assembly factor 2, mitochondrial OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=CNA04680 PE=3 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 4.8e-07 Identity = 31/100 (31.00%), Postives = 53/100 (53.00%), Query Frame = 0
BLAST of Chy5G098550 vs. ExPASy Swiss-Prot
Match: Q54B20 (Succinate dehydrogenase assembly factor 2, mitochondrial OS=Dictyostelium discoideum OX=44689 GN=DDB_G0293946 PE=3 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 4.8e-07 Identity = 29/79 (36.71%), Postives = 48/79 (60.76%), Query Frame = 0
BLAST of Chy5G098550 vs. ExPASy Swiss-Prot
Match: Q9NA72 (Succinate dehydrogenase assembly factor 2, mitochondrial OS=Caenorhabditis elegans OX=6239 GN=Y57A10A.29 PE=3 SV=1) HSP 1 Score: 54.7 bits (130), Expect = 1.4e-06 Identity = 35/108 (32.41%), Postives = 64/108 (59.26%), Query Frame = 0
BLAST of Chy5G098550 vs. ExPASy TrEMBL
Match: A0A0A0LKF9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072460 PE=4 SV=1) HSP 1 Score: 403.7 bits (1036), Expect = 4.5e-109 Identity = 194/198 (97.98%), Postives = 196/198 (98.99%), Query Frame = 0
BLAST of Chy5G098550 vs. ExPASy TrEMBL
Match: A0A5D3C9Y9 (Succinate dehydrogenase assembly factor 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G001200 PE=4 SV=1) HSP 1 Score: 392.5 bits (1007), Expect = 1.0e-105 Identity = 188/198 (94.95%), Postives = 193/198 (97.47%), Query Frame = 0
BLAST of Chy5G098550 vs. ExPASy TrEMBL
Match: A0A1S3B413 (succinate dehydrogenase assembly factor 2, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103485912 PE=4 SV=1) HSP 1 Score: 392.5 bits (1007), Expect = 1.0e-105 Identity = 188/198 (94.95%), Postives = 193/198 (97.47%), Query Frame = 0
BLAST of Chy5G098550 vs. ExPASy TrEMBL
Match: A0A6J1JZA0 (succinate dehydrogenase assembly factor 2, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111490192 PE=4 SV=1) HSP 1 Score: 342.4 bits (877), Expect = 1.2e-90 Identity = 166/201 (82.59%), Postives = 180/201 (89.55%), Query Frame = 0
BLAST of Chy5G098550 vs. ExPASy TrEMBL
Match: A0A6J1EQG7 (succinate dehydrogenase assembly factor 2, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111436468 PE=4 SV=1) HSP 1 Score: 342.0 bits (876), Expect = 1.6e-90 Identity = 165/201 (82.09%), Postives = 181/201 (90.05%), Query Frame = 0
BLAST of Chy5G098550 vs. NCBI nr
Match: XP_004152841.1 (succinate dehydrogenase assembly factor 2, mitochondrial [Cucumis sativus] >XP_011648982.1 succinate dehydrogenase assembly factor 2, mitochondrial [Cucumis sativus] >KAE8651700.1 hypothetical protein Csa_006248 [Cucumis sativus]) HSP 1 Score: 405 bits (1042), Expect = 8.47e-143 Identity = 194/198 (97.98%), Postives = 196/198 (98.99%), Query Frame = 0
BLAST of Chy5G098550 vs. NCBI nr
Match: XP_008441917.1 (PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Cucumis melo] >KAA0047670.1 succinate dehydrogenase assembly factor 2 [Cucumis melo var. makuwa] >TYK08325.1 succinate dehydrogenase assembly factor 2 [Cucumis melo var. makuwa]) HSP 1 Score: 394 bits (1013), Expect = 2.41e-138 Identity = 188/198 (94.95%), Postives = 193/198 (97.47%), Query Frame = 0
BLAST of Chy5G098550 vs. NCBI nr
Match: XP_038892622.1 (succinate dehydrogenase assembly factor 2, mitochondrial [Benincasa hispida]) HSP 1 Score: 370 bits (949), Expect = 1.28e-128 Identity = 176/198 (88.89%), Postives = 188/198 (94.95%), Query Frame = 0
BLAST of Chy5G098550 vs. NCBI nr
Match: KAG7032455.1 (Succinate dehydrogenase assembly factor 2, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 346 bits (887), Expect = 4.03e-119 Identity = 166/201 (82.59%), Postives = 181/201 (90.05%), Query Frame = 0
BLAST of Chy5G098550 vs. NCBI nr
Match: XP_022994486.1 (succinate dehydrogenase assembly factor 2, mitochondrial [Cucurbita maxima]) HSP 1 Score: 344 bits (883), Expect = 1.64e-118 Identity = 166/201 (82.59%), Postives = 180/201 (89.55%), Query Frame = 0
BLAST of Chy5G098550 vs. TAIR 10
Match: AT5G51040.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF339 (InterPro:IPR005631); Has 532 Blast hits to 532 proteins in 207 species: Archae - 0; Bacteria - 285; Metazoa - 16; Fungi - 41; Plants - 40; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink). ) HSP 1 Score: 215.3 bits (547), Expect = 4.4e-56 Identity = 102/176 (57.95%), Postives = 133/176 (75.57%), Query Frame = 0
BLAST of Chy5G098550 vs. TAIR 10
Match: AT5G51040.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF339 (InterPro:IPR005631). ) HSP 1 Score: 207.6 bits (527), Expect = 9.2e-54 Identity = 102/185 (55.14%), Postives = 133/185 (71.89%), Query Frame = 0
BLAST of Chy5G098550 vs. TAIR 10
Match: AT5G51040.2 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF339 (InterPro:IPR005631); Has 368 Blast hits to 368 proteins in 141 species: Archae - 0; Bacteria - 216; Metazoa - 8; Fungi - 13; Plants - 40; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink). ) HSP 1 Score: 201.8 bits (512), Expect = 5.0e-52 Identity = 98/176 (55.68%), Postives = 129/176 (73.30%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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