Chy4G075510 (gene) Cucumber (hystrix) v1

Overview


Name	Chy4G075510
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	AvrRpt-cleavage domain-containing protein
Location	chrH04: 10836808 .. 10839152 (-)
RNA-Seq Expression	Chy4G075510
Synteny	Chy4G075510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGTAAGCTACCATTCCTCCTCTTTTCTCGATTTCACTATTTTACTCTGTATTTCTTTTTATACTCTGTTTGGCTGCTCTGAAAATCTCCTAGTTAGCGGGAAAATACAGAATGAGAGTTTTTCAAAGTTTTCTTTCCAAACGGAACTAGTCCAGCGAGATGTGTTTCTGCTTTTCGTTTACCCTAAACTGATTAGTTAAATTTCAGTATCTGATGAGTGATGATGAACCGAAACCGAATAGTTTTTGAAGATTAAATCAAGAACTGTTCAAAAGCTGAGATGTGAGATAGAACTAGAGTGCTTTCTAGATGTAATTTCAGAAATTAAAAATGGTTTTTCTGTCATAGTCCTCGTACGGTTCGAATTATTGCTTGTTTTTTAATGCTTTTTTCTTCTGTTCATATGCTGGGTTTTGACCTGACTTGTGGTGGGTTTCGCTTTGTGCTTATTTCTTGAAGAAGTGTTCAATCACGAGCATTTGAATTCAATTTTAGAATTAAATCATTGCTACTTTTGGGCCATTCTTCTAGTTCATCGTTATGAAAAAGGATTCATACATAATTGTATACATGTGGGGCTTTGGTCGTTTATTATTATTATTATTTTATATTTAAACTATTTTTGGGGTGTATGACAATCAACTATTGTCTAATCAACCATCTATTTATTTGTTCTTATCCATATCTGCTGTATAGTCGTTTTTGGTTTTTTCCATTTTGAATCTTTTGAAAGGACTGTCTTTAGGTATGCGTGATTTTTGTTGAATCCTTTATGAACTTCATTAAAATCAAGTTTAATACTCATCTTGTTAATGATATAGTTTTCATATTGTCCATGTGAAAAAAGCTGACTATTTGTGCAAGACAGCTTAGGAAGATCATTCTTCTTATTCCACATTTGAATCTTCTCTTGTTCAAATACATTAGTTTTATATTATGATTGAACTTATTGTATTTGCTGTTTTGACATTTGTGTTCAAATTTCTATGGTGTAAATTCTCGAAGGGAAAGGAACAACTATTAGGATTGATAATATGTTATTTCATCTCAAGATTATTCATAGGCGTCAATTGAGAGTGGATTGTTTTGGATACCATTCAAGCTATTTTTGTGGTTGAAGTTGTCGTCTTTTCTTTGGGGATCGGTTGGTAATATGCAATTGGATTATAATGATTCCTCTAAACACTGTCTTGAAGATTTTAGATTTGTGTGCGTCTGTCGAGTCAGTTGTAGTTAATGATAATTGTTAACTTAAACCAATTTTACCAAATATGTCATCTGTTTTCAGCCAAGCCCAACAACTTCAGAAGTGATCAACCTCTAAACAGATTAACCTCTCTTAACAAACTCTTTTCAACTACTCTCAACCATTAACAAATAAAACAGAGTAACAAACTTCTCTGGTATAGTTATAAAAGGGGTTTGAAATTCTACTGACCGAAGTGTTCTTACATTTTATTTTGATGTGAATAAAATCGCTCCAAGGCTATTCGAAGTGGATGGCTTCAAGAAAGCTGAACCACTATAAAACTTGCTGTATTCTTCTTTCATGCTTTGAACTTTACTTAGAAATTTTAGTACTTGAAGTCCTTTGATGTCTTCTTCCGAAACGATGAACTAAGAAACTTGGGAATAACAATAATAATAAATTATCTAGAGGCAGCTTGAGCAATCGCAAGTTCTTATTTTCAAGCAGGTCCTAAGTCCTAAGTAAGTATAGAGTTTGCTGTTGGAATCTTAGAAAGGGTTAGCAATTCTTAAGGGTCGTTTGCAAAAATAACAAAAAAAAAAATGTTAGAATAATAGGATTCATGTCTCTACATTTTTTAAATGGCAAAATTAACAAATTAAAGTTGTAATCCTCTTATAACCCTCTATTAGTCTCTAATAACTCTCTGATAGCAATTTGATATATTTAATTAGTTGTTATATTTGCAAATGTGAAAAAAAAAAGAGGTGTTATAGACAATTTTTTTTAAAAAAAATTGTCATCTAATACAATTTCTCATTCTTAAATCACTTATTGACACTAAAATTTAAGCGGAGGAAGGAAAATTTGATGCGATGTCATCTTACAACAATACATATATCTGATACCCAATGAATCTATAGCTTTGCTTATTGCTAATTGACATGGTAATGAAATGGTTGCAAATGAAAGGATAACGAAGCTGCAGTTCCAAAATTTGGAGAATGGGATGATGGGAATGCAAAAGCACCGGAGAACTACACGGCTATTTTCAACAAGGTGCGGGAAGAGCGGCAAGATCAAACAGTGCGAGGGACACCAACACGGCCGATTGACAGCACAAACAACCAAAATCATGAACAGAATCAAAAG

mRNA sequence

ATGGCTGATAACGAAGCTGCAGTTCCAAAATTTGGAGAATGGGATGATGGGAATGCAAAAGCACCGGAGAACTACACGGCTATTTTCAACAAGGTGCGGGAAGAGCGGCAAGATCAAACAGTGCGAGGGACACCAACACGGCCGATTGACAGCACAAACAACCAAAATCATGAACAGAATCAAAAG

Coding sequence (CDS)

ATGGCTGATAACGAAGCTGCAGTTCCAAAATTTGGAGAATGGGATGATGGGAATGCAAAAGCACCGGAGAACTACACGGCTATTTTCAACAAGGTGCGGGAAGAGCGGCAAGATCAAACAGTGCGAGGGACACCAACACGGCCGATTGACAGCACAAACAACCAAAATCATGAACAGAATCAAAAG

Protein sequence

MADNEAAVPKFGEWDDGNAKAPENYTAIFNKVREERQDQTVRGTPTRPIDSTNNQNHEQNQK

Homology

[Close]

BLAST of Chy4G075510 vs. ExPASy Swiss-Prot
Match: Q8GYN5 (RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 2.0e-04
Identity = 25/52 (48.08%), Postives = 32/52 (61.54%), Query Frame = 0


Query: 8   VPKFGEWDDGNAKAPENYTAIFNKVREERQD-QTVRGTPTRPI-DSTNNQNH 58
           VPKFG+WD+ N  + + YT IFNKVREER     V G+   P   S+ N N+
Sbjct: 148 VPKFGDWDENNPSSADGYTHIFNKVREERSSGANVSGSSRTPTHQSSRNPNN 199

[Close]

BLAST of Chy4G075510 vs. ExPASy Swiss-Prot
Match: O22633 (Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1)

HSP 1 Score: 43.9 bits (102), Expect = 7.7e-04
Identity = 19/45 (42.22%), Postives = 28/45 (62.22%), Query Frame = 0


Query: 1  MADNEAAVPKFGEWDDGNAKAPENYTAIFNKVREERQDQTVRGTP 46
          M+D    +PKFGEWD  +  + E +T IFNK R+E++     G+P
Sbjct: 1  MSDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSP 45

[Close]

BLAST of Chy4G075510 vs. ExPASy TrEMBL
Match: A0A0A0L950 (AvrRpt-cleavage domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G630240 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 7.0e-24
Identity = 58/62 (93.55%), Postives = 60/62 (96.77%), Query Frame = 0


Query: 1  MADNEAAVPKFGEWDDGNAKAPENYTAIFNKVREERQDQTVRGTPTRPIDSTNNQNHEQN 60
          MADNE AVPKFGEWDDG+AKAPENYTAIFNKVREERQDQTVRGTPTR IDSTN+QNHEQN
Sbjct: 1  MADNETAVPKFGEWDDGDAKAPENYTAIFNKVREERQDQTVRGTPTRLIDSTNSQNHEQN 60

Query: 61 QK 63
          QK
Sbjct: 61 QK 62

[Close]

BLAST of Chy4G075510 vs. ExPASy TrEMBL
Match: A0A6N2AQE8 (AvrRpt-cleavage domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_006924 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.8e-06
Identity = 30/61 (49.18%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 2   ADNEAAVPKFGEWDDGNAKAPENYTAIFNKVREERQDQTVRGTPTRPIDSTNNQNHEQNQ 61
           +D  AAVP+FGEWD+ + ++ +NYT IFNKVREE+Q     GTP+R  ++T   N E+ Q
Sbjct: 188 SDRGAAVPRFGEWDENDPQSADNYTHIFNKVREEKQGNP-SGTPSRTSNNTQKHNSEEKQ 247

Query: 62  K 63
           +
Sbjct: 248 R 247

[Close]

BLAST of Chy4G075510 vs. ExPASy TrEMBL
Match: M1CPC9 (RIN4c protein OS=Solanum tuberosum OX=4113 GN=102596147 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.0e-06
Identity = 30/60 (50.00%), Postives = 42/60 (70.00%), Query Frame = 0


Query: 2   ADNEAAVPKFGEWDDGNAKAPENYTAIFNKVREERQDQTVRGTPTRPIDSTNNQNHEQNQ 61
           +D  AAVP+FGEWD+ + ++ +NYT IFNKVREE+Q     GTP+R  ++T   N E+ Q
Sbjct: 190 SDRGAAVPRFGEWDENDPQSADNYTHIFNKVREEKQGNP-SGTPSRASNNTQKHNSEEKQ 248

[Close]

BLAST of Chy4G075510 vs. ExPASy TrEMBL
Match: M1CPD2 (RIN4c protein OS=Solanum tuberosum OX=4113 GN=102596147 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.0e-06
Identity = 30/60 (50.00%), Postives = 42/60 (70.00%), Query Frame = 0


Query: 2   ADNEAAVPKFGEWDDGNAKAPENYTAIFNKVREERQDQTVRGTPTRPIDSTNNQNHEQNQ 61
           +D  AAVP+FGEWD+ + ++ +NYT IFNKVREE+Q     GTP+R  ++T   N E+ Q
Sbjct: 153 SDRGAAVPRFGEWDENDPQSADNYTHIFNKVREEKQGNP-SGTPSRASNNTQKHNSEEKQ 211

[Close]

BLAST of Chy4G075510 vs. ExPASy TrEMBL
Match: M1CPD0 (RIN4c protein OS=Solanum tuberosum OX=4113 GN=102596147 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.0e-06
Identity = 30/60 (50.00%), Postives = 42/60 (70.00%), Query Frame = 0


Query: 2   ADNEAAVPKFGEWDDGNAKAPENYTAIFNKVREERQDQTVRGTPTRPIDSTNNQNHEQNQ 61
           +D  AAVP+FGEWD+ + ++ +NYT IFNKVREE+Q     GTP+R  ++T   N E+ Q
Sbjct: 189 SDRGAAVPRFGEWDENDPQSADNYTHIFNKVREEKQGNP-SGTPSRASNNTQKHNSEEKQ 247

[Close]

BLAST of Chy4G075510 vs. NCBI nr
Match: XP_038888923.1 (RPM1-interacting protein 4-like [Benincasa hispida])

HSP 1 Score: 90.5 bits (223), Expect = 4.14e-22
Identity = 48/64 (75.00%), Postives = 52/64 (81.25%), Query Frame = 0


Query: 1  MADNEAAVPKFGEWDDGNAKAPENYTAIFNKVREERQDQTVRG-TPTRPID-STNNQNHE 60
          MADNEA VPKFGEWDD +AKAPENYTAIF KVRE RQ+  +R  TP R I+ STNNQNHE
Sbjct: 1  MADNEATVPKFGEWDDRDAKAPENYTAIFKKVREGRQEPGIRALTPPRSINNSTNNQNHE 60

Query: 61 QNQK 62
           NQK
Sbjct: 61 HNQK 64

[Close]

BLAST of Chy4G075510 vs. NCBI nr
Match: KAG6606311.1 (RPM1-interacting protein 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 80.5 bits (197), Expect = 3.71e-18
Identity = 44/64 (68.75%), Postives = 49/64 (76.56%), Query Frame = 0


Query: 1  MADNEAAVPKFGEWDDGNAKAPENYTAIFNKVREERQDQTVRGTPTRPIDST--NNQNHE 60
          MAD E AVPKFGEW+D +A  P+NYTAIF KVREERQDQ  R TPT P +S   +NQN E
Sbjct: 1  MADKEVAVPKFGEWNDRDATPPDNYTAIFTKVREERQDQGAR-TPTLPQNSNIPDNQNDE 60

Query: 61 QNQK 62
          QNQK
Sbjct: 61 QNQK 63

[Close]

BLAST of Chy4G075510 vs. NCBI nr
Match: KAG7036250.1 (hypothetical protein SDJN02_03052 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 80.5 bits (197), Expect = 7.84e-18
Identity = 44/64 (68.75%), Postives = 49/64 (76.56%), Query Frame = 0


Query: 1  MADNEAAVPKFGEWDDGNAKAPENYTAIFNKVREERQDQTVRGTPTRPIDST--NNQNHE 60
          MAD E AVPKFGEW+D +A  P+NYTAIF KVREERQDQ  R TPT P +S   +NQN E
Sbjct: 1  MADKEVAVPKFGEWNDRDATPPDNYTAIFTKVREERQDQGAR-TPTLPQNSNIPDNQNDE 60

Query: 61 QNQK 62
          QNQK
Sbjct: 61 QNQK 63

[Close]

BLAST of Chy4G075510 vs. NCBI nr
Match: XP_015086553.1 (RPM1-interacting protein 4 isoform X1 [Solanum pennellii])

HSP 1 Score: 62.4 bits (150), Expect = 1.35e-09
Identity = 30/62 (48.39%), Postives = 43/62 (69.35%), Query Frame = 0


Query: 1   MADNEAAVPKFGEWDDGNAKAPENYTAIFNKVREERQDQTVRGTPTRPIDSTNNQNHEQN 60
            +D  AAVP+FGEWD+ + ++ +NYT IFNKVREE+Q     GTP+R  ++T   N E+ 
Sbjct: 188 QSDRGAAVPRFGEWDENDPQSADNYTHIFNKVREEKQGNPS-GTPSRTSNNTQKHNSEEK 247

Query: 61  QK 62
           Q+
Sbjct: 248 QR 248

[Close]

BLAST of Chy4G075510 vs. NCBI nr
Match: XP_015086554.1 (RPM1-interacting protein 4 isoform X2 [Solanum pennellii])

HSP 1 Score: 62.0 bits (149), Expect = 1.87e-09
Identity = 30/61 (49.18%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 2   ADNEAAVPKFGEWDDGNAKAPENYTAIFNKVREERQDQTVRGTPTRPIDSTNNQNHEQNQ 61
           +D  AAVP+FGEWD+ + ++ +NYT IFNKVREE+Q     GTP+R  ++T   N E+ Q
Sbjct: 188 SDRGAAVPRFGEWDENDPQSADNYTHIFNKVREEKQGNPS-GTPSRTSNNTQKHNSEEKQ 247

[Close]

BLAST of Chy4G075510 vs. TAIR 10
Match: AT3G25070.1 (RPM1 interacting protein 4 )

HSP 1 Score: 45.8 bits (107), Expect = 1.4e-05
Identity = 25/52 (48.08%), Postives = 32/52 (61.54%), Query Frame = 0


Query: 8   VPKFGEWDDGNAKAPENYTAIFNKVREERQD-QTVRGTPTRPI-DSTNNQNH 58
           VPKFG+WD+ N  + + YT IFNKVREER     V G+   P   S+ N N+
Sbjct: 148 VPKFGDWDENNPSSADGYTHIFNKVREERSSGANVSGSSRTPTHQSSRNPNN 199

[Close]

BLAST of Chy4G075510 vs. TAIR 10
Match: AT5G55850.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 43.9 bits (102), Expect = 5.5e-05
Identity = 19/45 (42.22%), Postives = 28/45 (62.22%), Query Frame = 0


Query: 1  MADNEAAVPKFGEWDDGNAKAPENYTAIFNKVREERQDQTVRGTP 46
          M+D    +PKFGEWD  +  + E +T IFNK R+E++     G+P
Sbjct: 1  MSDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSP 45

[Close]

BLAST of Chy4G075510 vs. TAIR 10
Match: AT5G55850.2 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 41.2 bits (95), Expect = 3.5e-04
Identity = 18/43 (41.86%), Postives = 26/43 (60.47%), Query Frame = 0


Query: 3  DNEAAVPKFGEWDDGNAKAPENYTAIFNKVREERQDQTVRGTP 46
          D    +PKFGEWD  +  + E +T IFNK R+E++     G+P
Sbjct: 19 DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSP 61

[Close]

BLAST of Chy4G075510 vs. TAIR 10
Match: AT5G55850.3 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 41.2 bits (95), Expect = 3.5e-04
Identity = 18/43 (41.86%), Postives = 26/43 (60.47%), Query Frame = 0


Query: 3  DNEAAVPKFGEWDDGNAKAPENYTAIFNKVREERQDQTVRGTP 46
          D    +PKFGEWD  +  + E +T IFNK R+E++     G+P
Sbjct: 19 DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSP 61

[Close]

BLAST of Chy4G075510 vs. TAIR 10
Match: AT3G48450.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 40.4 bits (93), Expect = 6.1e-04
Identity = 21/61 (34.43%), Postives = 31/61 (50.82%), Query Frame = 0


Query: 8  VPKFGEWDDGNAKAPENYTAIFNKVREERQ--------DQTVRGTPTRPIDSTNNQNHEQ 61
          +PKFGEWD  N  + E +T IFNK R++++         +++   P       NN NH  
Sbjct: 10 LPKFGEWDATNPGSAEGFTVIFNKARDDKKTMKTAVAGPESIVSPPRNEEPPKNNNNHHH 69

The following BLAST results are available for this feature:

BLAST of Chy4G075510 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GYN5	2.0e-04	48.08	RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1	[more]
O22633	7.7e-04	42.22	Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1	[more]

BLAST of Chy4G075510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L950	7.0e-24	93.55	AvrRpt-cleavage domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G63...	[more]
A0A6N2AQE8	3.8e-06	49.18	AvrRpt-cleavage domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_0...	[more]
M1CPC9	5.0e-06	50.00	RIN4c protein OS=Solanum tuberosum OX=4113 GN=102596147 PE=4 SV=1	[more]
M1CPD2	5.0e-06	50.00	RIN4c protein OS=Solanum tuberosum OX=4113 GN=102596147 PE=4 SV=1	[more]
M1CPD0	5.0e-06	50.00	RIN4c protein OS=Solanum tuberosum OX=4113 GN=102596147 PE=4 SV=1	[more]

BLAST of Chy4G075510 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888923.1	4.14e-22	75.00	RPM1-interacting protein 4-like [Benincasa hispida]	[more]
KAG6606311.1	3.71e-18	68.75	RPM1-interacting protein 4, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7036250.1	7.84e-18	68.75	hypothetical protein SDJN02_03052 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_015086553.1	1.35e-09	48.39	RPM1-interacting protein 4 isoform X1 [Solanum pennellii]	[more]
XP_015086554.1	1.87e-09	49.18	RPM1-interacting protein 4 isoform X2 [Solanum pennellii]	[more]

BLAST of Chy4G075510 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G25070.1	1.4e-05	48.08	RPM1 interacting protein 4	[more]
AT5G55850.1	5.5e-05	42.22	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G55850.2	3.5e-04	41.86	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G55850.3	3.5e-04	41.86	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT3G48450.1	6.1e-04	34.43	RPM1-interacting protein 4 (RIN4) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008700	RIN4, pathogenic type III effector avirulence factor Avr cleavage site	PFAM	PF05627	AvrRpt-cleavage	coord: 3..37 e-value: 2.4E-16 score: 58.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..62
None	No IPR available	PANTHER	PTHR33159:SF26	RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN	coord: 3..61
IPR040387	RPM1-interacting protein 4/NOI4	PANTHER	PTHR33159	RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN	coord: 3..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy4G075510.1	Chy4G075510.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005886	plasma membrane