Chy12G214180 (gene) Cucumber (hystrix) v1

Overview
NameChy12G214180
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionDUF4283 domain-containing protein
LocationchrH12: 13277201 .. 13278130 (+)
RNA-Seq ExpressionChy12G214180
SyntenyChy12G214180
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTTGTTTCCTAAAGCTCGGTATGGAGCATTACAACAAGGAGATATTCAAGAAAATTGTGGAAGCCATTGGCGTTTGTCTTGTGAAAATCAACCCGACAACTGAAAGAAGACAAAATATACTGCATTAGGATTACTTTAAGAAATCCCTTTATTTACTATAACCACGTTGAGCAAAATCTGCAGGACATTGTATAGGAGGGTTTAGATTGTTTGTGCTCTGTTGGTAGATGTGTTTATTAGGAGTGTAAGAATAACCTTACAACCTGAATAACCCCTGCTATCCAACACATATGCTTTTGTTGGGTTGGGTTAAAAAAATTGGATTTTTTTAGATTGATTAGATCTTGAATTGGAGGATAAAAAAATTCGGTTTAAATTAACCTAACCCAAATTAATATAATATATATTACTTATTTAATAAAAAAGAAAATTATGTAGATGTTGTGTCATCAAATTGGGTCACCAAATTTAATTTTCCCTTGTTCTTTATGTTTTTATGTAATTCCGTAGTTGTTCTTTTTGTTATTAACTCCCGATACAACAAACAGTACAATAACTAAGTGTATGTTTTCTCACCATTGATTCATTATATACTACCTTCATCAGAATCAGCATTGGGATCTAAATCCAAGAAAAAGACCAATTTCTTGAGTTGAAATTGAAGGACTGTCCAAAAGCTTAAGTTGAAAAGAAAATTTTGCCAAACTTTCCAAAAGAATCTTAAACTACAACCATGAAAACTTCTGAGTTTATGCCTTTAACTACTTTTTTTTTTTTTGTTGCAGGTCACTTCAAAGCTGCAAAAGATAGTAGCCCTACAAGGCTTGTAGTTCTTAACTATGTATCACATTCATCATCTGCTGTTGAGGTTGGCCTCAATTTCTTTTCAAATGTGATACAACAAACCACAACTAGAAAAAGATGA

mRNA sequence

ATGGATTTGTTTCCTAAAGCTCGGTATGGAGCATTACAACAAGGAGATATTCAAGAAAATTGTGGAAGCCATTGGCGTCACTTCAAAGCTGCAAAAGATAGTAGCCCTACAAGGCTTGTAGTTCTTAACTATGTATCACATTCATCATCTGCTGTTGAGGTTGGCCTCAATTTCTTTTCAAATGTGATACAACAAACCACAACTAGAAAAAGATGA

Coding sequence (CDS)

ATGGATTTGTTTCCTAAAGCTCGGTATGGAGCATTACAACAAGGAGATATTCAAGAAAATTGTGGAAGCCATTGGCGTCACTTCAAAGCTGCAAAAGATAGTAGCCCTACAAGGCTTGTAGTTCTTAACTATGTATCACATTCATCATCTGCTGTTGAGGTTGGCCTCAATTTCTTTTCAAATGTGATACAACAAACCACAACTAGAAAAAGATGA

Protein sequence

MDLFPKARYGALQQGDIQENCGSHWRHFKAAKDSSPTRLVVLNYVSHSSSAVEVGLNFFSNVIQQTTTRKR*
Homology
[Close]
BLAST of Chy12G214180 vs. ExPASy TrEMBL
Match: A0A5A7SY10 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G00450 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.6e-06
Identity = 31/44 (70.45%), Postives = 35/44 (79.55%), Query Frame = 0 

Query: 28  FKAAKDSSPTRLVVLNYVSHSSSAVEVGLNFFSNVIQQTTTRKR 72
           F+AAK SSPT+L VLN VSHSSSAVE G+N FS  IQQT T K+
Sbjct: 376 FRAAKGSSPTKLPVLNNVSHSSSAVEAGINSFSCAIQQTITEKK 419

[Close]
BLAST of Chy12G214180 vs. NCBI nr
Match: KAA0034059.1 (hypothetical protein E6C27_scaffold65G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 1.22e-08
Identity = 31/44 (70.45%), Postives = 35/44 (79.55%), Query Frame = 0 

Query: 28  FKAAKDSSPTRLVVLNYVSHSSSAVEVGLNFFSNVIQQTTTRKR 71
           F+AAK SSPT+L VLN VSHSSSAVE G+N FS  IQQT T K+
Sbjct: 376 FRAAKGSSPTKLPVLNNVSHSSSAVEAGINSFSCAIQQTITEKK 419

[Close]
BLAST of Chy12G214180 vs. NCBI nr
Match: KAA0034060.1 (hypothetical protein E6C27_scaffold65G00460 [Cucumis melo var. makuwa])

HSP 1 Score: 49.7 bits (117), Expect = 1.07e-04
Identity = 27/43 (62.79%), Postives = 30/43 (69.77%), Query Frame = 0 

Query: 28  FKAAKDSSPTRLVVLNYVSHSSSAVEVGLNFFSNVIQQTTTRK 70
           F+AAK S PT+L + N  S SSSAVE GLN FS V QQ TT K
Sbjct: 476 FRAAKASCPTKLALHNNGSRSSSAVEAGLNLFSTVSQQLTTVK 518

The following BLAST results are available for this feature:
BLAST of Chy12G214180 vs.
Match NameE-valueIdentityDescription
BLAST of Chy12G214180 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SY102.6e-0670.45DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
BLAST of Chy12G214180 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0034059.11.22e-0870.45hypothetical protein E6C27_scaffold65G00450 [Cucumis melo var. makuwa][more]
KAA0034060.11.07e-0462.79hypothetical protein E6C27_scaffold65G00460 [Cucumis melo var. makuwa][more]
BLAST of Chy12G214180 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy12G214180.1Chy12G214180.1mRNA